Wall clock time and date at job start Mon Mar 30 2020 00:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.48119 * 2 1 4 4 N 1.46496 * 109.47032 * 58.31966 * 3 2 1 5 5 C 1.36937 * 119.99579 * 264.24884 * 4 3 2 6 6 H 1.07997 * 119.99892 * 138.32766 * 5 4 3 7 7 C 1.38811 * 120.00126 * 318.32381 * 5 4 3 8 8 N 1.31615 * 120.00161 * 343.12619 * 7 5 4 9 9 Si 1.86799 * 119.99916 * 163.12213 * 7 5 4 10 10 H 1.48506 * 109.47169 * 90.00172 * 9 7 5 11 11 H 1.48504 * 109.47439 * 210.00254 * 9 7 5 12 12 H 1.48508 * 109.47160 * 330.00326 * 9 7 5 13 13 C 1.46495 * 120.00284 * 84.25280 * 4 3 2 14 14 C 1.53002 * 109.47179 * 90.63217 * 13 4 3 15 15 C 1.50701 * 109.47178 * 184.72975 * 14 13 4 16 16 O 1.20827 * 119.99838 * 0.02562 * 15 14 13 17 17 O 1.34226 * 120.00224 * 180.02562 * 15 14 13 18 18 C 1.53092 * 109.48329 * 239.96135 * 2 1 3 19 19 C 1.53176 * 109.16393 * 297.63171 * 18 2 1 20 20 C 1.53181 * 109.03466 * 303.01432 * 19 18 2 21 21 C 1.53091 * 109.16375 * 56.98013 * 20 19 18 22 22 O 1.42902 * 109.48050 * 120.02290 * 2 1 3 23 23 H 1.09001 * 109.46648 * 303.36497 * 1 2 3 24 24 H 1.08998 * 109.46757 * 63.36335 * 1 2 3 25 25 H 1.09003 * 109.46952 * 183.36203 * 1 2 3 26 26 H 1.09006 * 109.46816 * 178.32119 * 3 2 1 27 27 H 1.09004 * 109.46926 * 298.31607 * 3 2 1 28 28 H 0.97001 * 119.99824 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47322 * 210.63197 * 13 4 3 30 30 H 1.08998 * 109.47038 * 330.63392 * 13 4 3 31 31 H 1.09005 * 109.47118 * 304.72896 * 14 13 4 32 32 H 1.08998 * 109.47462 * 64.73114 * 14 13 4 33 33 H 0.96703 * 117.00419 * 179.97438 * 17 15 14 34 34 H 1.09003 * 109.51808 * 57.53267 * 18 2 1 35 35 H 1.08996 * 109.52417 * 177.65400 * 18 2 1 36 36 H 1.08995 * 109.54670 * 62.88121 * 19 18 2 37 37 H 1.09000 * 109.54513 * 183.06031 * 19 18 2 38 38 H 1.08993 * 109.52393 * 176.89119 * 20 19 18 39 39 H 1.08999 * 109.52307 * 297.01156 * 20 19 18 40 40 H 1.08996 * 109.47936 * 182.40694 * 21 20 19 41 41 H 1.09004 * 109.47959 * 62.37260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 7 1.5193 2.1447 1.1754 5 6 0.3861 2.9064 1.0712 6 1 -0.3605 2.8730 1.8508 7 6 0.1971 3.7216 -0.0363 8 7 1.2165 4.0256 -0.8114 9 14 -1.5040 4.3871 -0.4268 10 1 -1.6938 5.6922 0.2559 11 1 -1.6386 4.5719 -1.8941 12 1 -2.5323 3.4263 0.0475 13 6 2.2105 2.0321 2.4621 14 6 3.2443 3.1533 2.5855 15 6 4.0349 2.9701 3.8553 16 8 3.7963 2.0381 4.5864 17 8 5.0041 3.8422 4.1743 18 6 2.0406 -0.7225 -1.2494 19 6 1.5757 -2.1815 -1.2119 20 6 2.0765 -2.8323 0.0813 21 6 1.5646 -2.0283 1.2794 22 8 2.0066 -0.6741 1.1665 23 1 -0.3633 0.5652 0.8583 24 1 -0.3633 0.4607 -0.9186 25 1 -0.3633 -1.0259 0.0603 26 1 3.1299 1.4423 0.0301 27 1 1.7019 1.9475 -0.9047 28 1 1.0843 4.5949 -1.5855 29 1 1.4861 2.1151 3.2723 30 1 2.7129 1.0666 2.5213 31 1 3.9188 3.1214 1.7298 32 1 2.7346 4.1164 2.6106 33 1 5.4836 3.6835 4.9989 34 1 1.6422 -0.2360 -2.1398 35 1 3.1298 -0.6866 -1.2714 36 1 0.4868 -2.2181 -1.2405 37 1 1.9812 -2.7157 -2.0711 38 1 1.7037 -3.8546 0.1426 39 1 3.1664 -2.8411 0.0863 40 1 1.9531 -2.4620 2.2008 41 1 0.4750 -2.0548 1.2961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594010727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:17 Heat of formation + Delta-G solvation = -133.821782 kcal Electronic energy + Delta-G solvation = -22626.229819 eV Core-core repulsion = 19313.267140 eV Total energy + Delta-G solvation = -3312.962679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.69084 -39.29027 -35.99111 -35.45798 -33.13238 -32.12005 -31.88078 -29.34352 -27.38795 -25.98512 -24.56774 -23.56892 -22.12163 -20.86819 -19.62238 -18.53575 -17.61639 -16.82687 -15.86427 -15.60690 -15.42485 -15.08656 -14.71044 -14.44720 -13.98841 -13.56883 -13.46058 -12.94882 -12.62313 -12.51890 -12.16373 -12.04956 -11.55869 -11.33739 -11.21078 -11.08507 -11.05514 -10.83328 -10.65980 -10.48993 -10.45008 -10.32274 -10.14155 -9.99454 -9.96520 -9.75475 -9.35641 -8.66632 -8.50034 -6.53829 -5.84384 -3.44921 2.76967 3.31667 3.40228 3.42764 3.63841 4.44772 4.50584 5.12580 5.14643 5.23973 5.30439 5.42028 5.69179 5.70269 5.82257 5.87918 5.96065 6.01747 6.07713 6.10272 6.21724 6.25768 6.29523 6.32002 6.44454 6.57870 6.62639 6.67069 6.87032 6.93186 6.94128 6.95738 7.26734 7.33097 7.50125 7.79529 8.09720 8.39783 8.52787 9.17254 9.76376 10.40105 11.16742 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.009372 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.940875 B = 2986.788366 C = 4990.346795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 C 0.171 3.829 4 N -0.570 5.570 5 C -0.258 4.258 6 H 0.059 0.941 7 C 0.018 3.982 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.164 3.836 14 C -0.130 4.130 15 C 0.477 3.523 16 O -0.527 6.527 17 O -0.526 6.526 18 C -0.142 4.142 19 C -0.120 4.120 20 C -0.152 4.152 21 C 0.056 3.944 22 O -0.362 6.362 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.104 0.896 28 H 0.256 0.744 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -7.730 1.361 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 C 0.044 3.956 4 N -0.289 5.289 5 C -0.388 4.388 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.036 3.964 14 C -0.170 4.170 15 C 0.321 3.679 16 O -0.415 6.415 17 O -0.337 6.337 18 C -0.180 4.180 19 C -0.158 4.158 20 C -0.190 4.190 21 C -0.022 4.022 22 O -0.281 6.281 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.035 -7.703 1.158 8.360 hybrid contribution -0.638 0.184 -0.041 0.665 sum 2.397 -7.520 1.117 7.971 Atomic orbital electron populations 1.22229 0.95955 0.99473 1.03930 1.22574 0.93885 0.95056 0.83160 1.20928 0.95062 0.85656 0.93985 1.43642 1.27662 1.52918 1.04638 1.19001 0.95457 1.17834 1.06489 0.92352 1.25286 0.96787 0.96189 0.99997 1.69946 1.28682 1.37100 1.17376 0.86474 0.84881 0.79150 0.77337 1.21200 1.21551 1.20206 1.20828 0.92047 0.94052 0.89428 1.22431 0.98281 1.05984 0.90327 1.24493 0.76932 0.78242 0.88258 1.90651 1.66593 1.31921 1.52379 1.84671 1.48436 1.54996 1.45633 1.22142 1.01105 0.95142 0.99611 1.21580 1.00818 0.96393 0.96974 1.22155 1.01434 0.98949 0.96465 1.22432 0.98466 0.84260 0.96998 1.88058 1.73218 1.22636 1.44202 0.89829 0.92770 0.94770 0.95386 0.87867 0.93445 0.93570 0.92053 0.88634 0.87999 0.74711 0.91386 0.91895 0.91953 0.92597 0.92070 0.91671 0.90197 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 7.49 37.16 0.28 -2.78 16 2 C 0.09 1.81 0.87 -90.57 -0.08 1.73 16 3 C 0.17 3.78 4.50 -4.04 -0.02 3.77 16 4 N -0.57 -13.34 1.99 -173.24 -0.34 -13.69 16 5 C -0.26 -6.53 7.64 -15.06 -0.12 -6.65 16 6 H 0.06 1.51 7.88 -52.49 -0.41 1.10 16 7 C 0.02 0.46 4.97 -17.43 -0.09 0.38 16 8 N -0.89 -23.74 11.58 55.49 0.64 -23.10 16 9 Si 0.89 20.51 29.59 -169.99 -5.03 15.49 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.16 3.55 4.77 -4.04 -0.02 3.53 16 14 C -0.13 -2.55 6.14 -27.88 -0.17 -2.73 16 15 C 0.48 8.59 8.33 36.01 0.30 8.89 16 16 O -0.53 -10.65 16.68 -18.75 -0.31 -10.96 16 17 O -0.53 -7.74 13.42 -39.25 -0.53 -8.27 16 18 C -0.14 -2.32 4.92 -26.59 -0.13 -2.45 16 19 C -0.12 -1.67 5.72 -26.55 -0.15 -1.82 16 20 C -0.15 -2.03 6.14 -26.59 -0.16 -2.20 16 21 C 0.06 0.86 6.52 37.20 0.24 1.10 16 22 O -0.36 -6.95 8.42 -35.23 -0.30 -7.25 16 23 H 0.08 1.82 6.34 -51.93 -0.33 1.49 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.03 0.58 4.97 -51.93 -0.26 0.32 16 26 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.10 2.54 5.75 -51.93 -0.30 2.24 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 30 H 0.06 1.36 6.39 -51.93 -0.33 1.02 16 31 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 32 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 33 H 0.40 3.85 9.10 45.56 0.41 4.27 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.86 6.69 -51.93 -0.35 0.52 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.72 6.27 -51.93 -0.33 0.39 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -28.53 322.17 -6.80 -35.33 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.67 Total: 6.82 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.11 Total: 0.78 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.30 Total: -36.79 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.14 Total: -26.48 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.53 -6.80 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594010727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.492 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds