Wall clock time and date at job start Mon Mar 30 2020 00:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.48119 * 2 1 4 4 N 1.46496 * 109.47032 * 58.31966 * 3 2 1 5 5 C 1.36937 * 119.99579 * 264.24884 * 4 3 2 6 6 H 1.07997 * 119.99892 * 138.32766 * 5 4 3 7 7 C 1.38811 * 120.00126 * 318.32381 * 5 4 3 8 8 N 1.31615 * 120.00161 * 343.12619 * 7 5 4 9 9 Si 1.86799 * 119.99916 * 163.12213 * 7 5 4 10 10 H 1.48506 * 109.47169 * 90.00172 * 9 7 5 11 11 H 1.48504 * 109.47439 * 210.00254 * 9 7 5 12 12 H 1.48508 * 109.47160 * 330.00326 * 9 7 5 13 13 C 1.46495 * 120.00284 * 84.25280 * 4 3 2 14 14 C 1.53002 * 109.47179 * 90.63217 * 13 4 3 15 15 C 1.50701 * 109.47178 * 184.72975 * 14 13 4 16 16 O 1.20827 * 119.99838 * 0.02562 * 15 14 13 17 17 O 1.34226 * 120.00224 * 180.02562 * 15 14 13 18 18 C 1.53092 * 109.48329 * 239.96135 * 2 1 3 19 19 C 1.53176 * 109.16393 * 297.63171 * 18 2 1 20 20 C 1.53181 * 109.03466 * 303.01432 * 19 18 2 21 21 C 1.53091 * 109.16375 * 56.98013 * 20 19 18 22 22 O 1.42902 * 109.48050 * 120.02290 * 2 1 3 23 23 H 1.09001 * 109.46648 * 303.36497 * 1 2 3 24 24 H 1.08998 * 109.46757 * 63.36335 * 1 2 3 25 25 H 1.09003 * 109.46952 * 183.36203 * 1 2 3 26 26 H 1.09006 * 109.46816 * 178.32119 * 3 2 1 27 27 H 1.09004 * 109.46926 * 298.31607 * 3 2 1 28 28 H 0.97001 * 119.99824 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47322 * 210.63197 * 13 4 3 30 30 H 1.08998 * 109.47038 * 330.63392 * 13 4 3 31 31 H 1.09005 * 109.47118 * 304.72896 * 14 13 4 32 32 H 1.08998 * 109.47462 * 64.73114 * 14 13 4 33 33 H 0.96703 * 117.00419 * 179.97438 * 17 15 14 34 34 H 1.09003 * 109.51808 * 57.53267 * 18 2 1 35 35 H 1.08996 * 109.52417 * 177.65400 * 18 2 1 36 36 H 1.08995 * 109.54670 * 62.88121 * 19 18 2 37 37 H 1.09000 * 109.54513 * 183.06031 * 19 18 2 38 38 H 1.08993 * 109.52393 * 176.89119 * 20 19 18 39 39 H 1.08999 * 109.52307 * 297.01156 * 20 19 18 40 40 H 1.08996 * 109.47936 * 182.40694 * 21 20 19 41 41 H 1.09004 * 109.47959 * 62.37260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 7 1.5193 2.1447 1.1754 5 6 0.3861 2.9064 1.0712 6 1 -0.3605 2.8730 1.8508 7 6 0.1971 3.7216 -0.0363 8 7 1.2165 4.0256 -0.8114 9 14 -1.5040 4.3871 -0.4268 10 1 -1.6938 5.6922 0.2559 11 1 -1.6386 4.5719 -1.8941 12 1 -2.5323 3.4263 0.0475 13 6 2.2105 2.0321 2.4621 14 6 3.2443 3.1533 2.5855 15 6 4.0349 2.9701 3.8553 16 8 3.7963 2.0381 4.5864 17 8 5.0041 3.8422 4.1743 18 6 2.0406 -0.7225 -1.2494 19 6 1.5757 -2.1815 -1.2119 20 6 2.0765 -2.8323 0.0813 21 6 1.5646 -2.0283 1.2794 22 8 2.0066 -0.6741 1.1665 23 1 -0.3633 0.5652 0.8583 24 1 -0.3633 0.4607 -0.9186 25 1 -0.3633 -1.0259 0.0603 26 1 3.1299 1.4423 0.0301 27 1 1.7019 1.9475 -0.9047 28 1 1.0843 4.5949 -1.5855 29 1 1.4861 2.1151 3.2723 30 1 2.7129 1.0666 2.5213 31 1 3.9188 3.1214 1.7298 32 1 2.7346 4.1164 2.6106 33 1 5.4836 3.6835 4.9989 34 1 1.6422 -0.2360 -2.1398 35 1 3.1298 -0.6866 -1.2714 36 1 0.4868 -2.2181 -1.2405 37 1 1.9812 -2.7157 -2.0711 38 1 1.7037 -3.8546 0.1426 39 1 3.1664 -2.8411 0.0863 40 1 1.9531 -2.4620 2.2008 41 1 0.4750 -2.0548 1.2961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594010727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:16 Heat of formation + Delta-G solvation = -150.821907 kcal Electronic energy + Delta-G solvation = -22626.967000 eV Core-core repulsion = 19313.267140 eV Total energy + Delta-G solvation = -3313.699860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15339 -40.69383 -37.62145 -36.94868 -34.44225 -33.78747 -33.55119 -31.03542 -28.81699 -27.72192 -26.32833 -24.83310 -23.66276 -22.32512 -21.26982 -19.88799 -19.08206 -18.63188 -17.36846 -17.09303 -16.89754 -16.58472 -16.49915 -15.75367 -15.39329 -15.27657 -15.04529 -14.41176 -14.17335 -13.93014 -13.67910 -13.41653 -13.10367 -13.05507 -12.88287 -12.69289 -12.47517 -12.36826 -12.32928 -12.12351 -12.03291 -11.86397 -11.72630 -11.54084 -11.50442 -11.44698 -10.79745 -10.47424 -10.03030 -8.45353 -7.79330 -5.43752 1.29423 1.46875 1.51336 1.58648 2.25403 2.55120 3.12474 3.29938 3.75463 4.02098 4.03043 4.09144 4.26259 4.29675 4.34583 4.36429 4.55060 4.63262 4.71198 4.74118 4.85789 4.93921 4.96864 5.07410 5.10537 5.11550 5.17024 5.17696 5.23915 5.32518 5.42808 5.53112 5.66138 5.68538 5.74089 5.77374 6.54401 6.69041 7.10071 7.23345 7.86547 8.46990 9.18205 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.009372 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.940875 B = 2986.788366 C = 4990.346795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.100 3.900 3 C 0.175 3.825 4 N -0.581 5.581 5 C -0.258 4.258 6 H 0.048 0.952 7 C -0.019 4.019 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.274 1.274 13 C 0.171 3.829 14 C -0.121 4.121 15 C 0.493 3.507 16 O -0.549 6.549 17 O -0.515 6.515 18 C -0.139 4.139 19 C -0.116 4.116 20 C -0.146 4.146 21 C 0.047 3.953 22 O -0.386 6.386 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.253 0.747 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.423 0.577 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 -9.067 1.446 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.058 3.942 3 C 0.048 3.952 4 N -0.300 5.300 5 C -0.388 4.388 6 H 0.066 0.934 7 C -0.217 4.217 8 N -0.556 5.556 9 Si 0.773 3.227 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.199 1.199 13 C 0.044 3.956 14 C -0.162 4.162 15 C 0.337 3.663 16 O -0.440 6.440 17 O -0.328 6.328 18 C -0.177 4.177 19 C -0.154 4.154 20 C -0.183 4.183 21 C -0.030 4.030 22 O -0.306 6.306 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.284 0.716 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.277 -9.044 1.268 9.702 hybrid contribution -0.630 0.592 0.030 0.865 sum 2.647 -8.452 1.297 8.951 Atomic orbital electron populations 1.22098 0.96183 1.00343 1.01979 1.22272 0.93501 0.93660 0.84724 1.20785 0.94339 0.87558 0.92476 1.43728 1.27673 1.53257 1.05304 1.19034 0.95864 1.17682 1.06267 0.93441 1.25772 0.99231 0.96677 1.00046 1.70054 1.29970 1.37871 1.17666 0.85651 0.81836 0.78413 0.76770 1.21290 1.21703 1.19880 1.20661 0.92043 0.94558 0.88329 1.22085 0.98066 1.04450 0.91603 1.23809 0.77181 0.78108 0.87229 1.90654 1.67494 1.32974 1.52890 1.84573 1.47451 1.53495 1.47319 1.22083 1.00960 0.96892 0.97795 1.21580 1.01022 0.94463 0.98302 1.22113 1.01445 0.99913 0.94841 1.22684 0.98670 0.82719 0.98880 1.87998 1.73571 1.24803 1.44205 0.92775 0.93710 0.92287 0.96329 0.90355 0.93791 0.94772 0.92478 0.89001 0.89015 0.71602 0.91680 0.92020 0.91728 0.90296 0.89187 0.91662 0.88895 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 7.49 71.98 0.54 -5.17 16 2 C 0.10 3.80 0.87 -10.76 -0.01 3.79 16 3 C 0.17 7.95 4.50 86.38 0.39 8.34 16 4 N -0.58 -27.87 1.99 -702.01 -1.40 -29.27 16 5 C -0.26 -13.37 7.64 84.03 0.64 -12.73 16 6 H 0.05 2.54 7.88 -2.91 -0.02 2.51 16 7 C -0.02 -0.99 4.97 84.86 0.42 -0.57 16 8 N -0.91 -49.69 11.58 21.65 0.25 -49.44 16 9 Si 0.94 42.63 29.59 68.60 2.03 44.66 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 C 0.17 7.56 4.77 86.38 0.41 7.98 16 14 C -0.12 -4.83 6.14 29.85 0.18 -4.64 16 15 C 0.49 17.25 8.33 71.24 0.59 17.85 16 16 O -0.55 -21.72 16.68 21.96 0.37 -21.36 16 17 O -0.51 -14.01 13.42 -51.37 -0.69 -14.70 16 18 C -0.14 -4.40 4.92 30.68 0.15 -4.25 16 19 C -0.12 -2.89 5.72 30.71 0.18 -2.71 16 20 C -0.15 -3.43 6.14 30.69 0.19 -3.24 16 21 C 0.05 1.36 6.52 72.01 0.47 1.83 16 22 O -0.39 -14.61 8.42 -148.98 -1.25 -15.86 16 23 H 0.05 2.39 6.34 -2.39 -0.02 2.37 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.92 4.97 -2.39 -0.01 1.91 16 26 H 0.02 0.85 8.11 -2.38 -0.02 0.83 16 27 H 0.08 3.98 5.75 -2.39 -0.01 3.96 16 28 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 29 H 0.03 1.56 8.04 -2.39 -0.02 1.55 16 30 H 0.06 2.56 6.39 -2.39 -0.02 2.55 16 31 H 0.09 3.72 8.14 -2.38 -0.02 3.70 16 32 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 33 H 0.42 6.98 9.10 -74.06 -0.67 6.30 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.59 6.69 -2.39 -0.02 1.57 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.34 6.27 -2.38 -0.01 1.33 16 Total: -1.00 -61.32 322.17 3.81 -57.50 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.35 Total: 21.99 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.16 Total: 6.47 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.15 Total: -78.71 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.58 Total: -51.92 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -61.32 3.81 -57.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594010727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.320 kcal (2) G-P(sol) polarization free energy of solvation -61.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds