Wall clock time and date at job start Mon Mar 30 2020 01:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47097 * 2 1 4 4 H 1.08998 * 109.47415 * 60.15518 * 3 2 1 5 5 C 1.52997 * 109.47407 * 300.14335 * 3 2 1 6 6 C 1.53009 * 109.46890 * 180.14701 * 3 2 1 7 7 H 1.08997 * 109.46809 * 180.51028 * 6 3 2 8 8 C 1.50700 * 109.46732 * 60.51287 * 6 3 2 9 9 O 1.20828 * 119.99814 * 238.08795 * 8 6 3 10 10 O 1.34225 * 120.00344 * 58.09439 * 8 6 3 11 11 N 1.46894 * 109.47130 * 300.51680 * 6 3 2 12 12 C 1.47893 * 111.00429 * 80.21360 * 11 6 3 13 13 C 1.54001 * 107.06036 * 214.15549 * 12 11 6 14 14 C 1.54593 * 105.13694 * 1.22313 * 13 12 11 15 15 O 1.42896 * 110.72462 * 263.59589 * 14 13 12 16 16 C 1.50704 * 110.72155 * 140.31606 * 14 13 12 17 17 H 1.08003 * 120.00181 * 241.45462 * 16 14 13 18 18 C 1.37870 * 119.99977 * 61.45224 * 16 14 13 19 19 N 1.31513 * 120.00173 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 120.00222 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46816 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47368 * 119.99728 * 20 18 16 23 23 H 1.48500 * 109.47052 * 240.00261 * 20 18 16 24 24 C 1.48536 * 110.99868 * 322.81620 * 11 6 3 25 25 H 1.08995 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47173 * 59.99852 * 1 2 3 27 27 H 1.09002 * 109.46640 * 300.00134 * 1 2 3 28 28 H 1.09006 * 109.47204 * 120.00147 * 2 1 3 29 29 H 1.09002 * 109.46640 * 239.99866 * 2 1 3 30 30 H 1.09008 * 109.46432 * 68.20320 * 5 3 2 31 31 H 1.09002 * 109.47551 * 188.20050 * 5 3 2 32 32 H 1.09000 * 109.47289 * 308.20505 * 5 3 2 33 33 H 0.96702 * 117.00385 * 179.97438 * 10 8 6 34 34 H 1.08996 * 109.92074 * 333.51155 * 12 11 6 35 35 H 1.09006 * 109.91983 * 94.80287 * 12 11 6 36 36 H 1.09001 * 110.30542 * 120.14097 * 13 12 11 37 37 H 1.09002 * 110.30731 * 242.21059 * 13 12 11 38 38 H 0.96694 * 114.00268 * 298.54858 * 15 14 13 39 39 H 0.97002 * 119.99711 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.67013 * 278.15866 * 24 11 6 41 41 H 1.09000 * 110.66693 * 41.28897 * 24 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6790 1.9555 0.8913 5 6 1.5271 2.1648 -1.2474 6 6 3.5701 1.4424 -0.0037 7 1 3.9334 2.4700 0.0055 8 6 4.0693 0.7441 -1.2423 9 8 4.7924 -0.2188 -1.1430 10 8 3.7109 1.1918 -2.4559 11 7 4.0626 0.7381 1.1876 12 6 4.0175 -0.7273 0.9935 13 6 3.6883 -1.3543 2.3611 14 6 3.5206 -0.1568 3.3243 15 8 4.7326 0.0901 4.0399 16 6 2.3765 -0.3942 4.2760 17 1 1.5271 0.2729 4.2764 18 6 2.4141 -1.4629 5.1462 19 7 3.4486 -2.2750 5.1460 20 14 0.9956 -1.7576 6.3254 21 1 -0.0379 -0.7096 6.1283 22 1 0.4029 -3.0936 6.0628 23 1 1.4945 -1.7034 7.7231 24 6 3.2013 1.0173 2.3651 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 0.4471 2.2935 -1.1743 31 1 2.0050 3.1415 -1.3240 32 1 1.7636 1.5741 -2.1324 33 1 4.0563 0.7115 -3.2208 34 1 3.2418 -0.9826 0.2716 35 1 4.9859 -1.0856 0.6442 36 1 2.7617 -1.9252 2.3022 37 1 4.5065 -1.9949 2.6903 38 1 5.0181 -0.6474 4.5963 39 1 3.4751 -3.0267 5.7586 40 1 3.4698 1.9704 2.8209 41 1 2.1486 1.0079 2.0825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594876366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:48 Heat of formation + Delta-G solvation = -112.160760 kcal Electronic energy + Delta-G solvation = -23349.715672 eV Core-core repulsion = 20037.692286 eV Total energy + Delta-G solvation = -3312.023387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06011 -38.63047 -36.22200 -35.97525 -33.64093 -32.08614 -31.15379 -28.78733 -28.09918 -26.37879 -24.54523 -24.06927 -22.07263 -20.15725 -19.88799 -18.92547 -17.87797 -17.06150 -16.18247 -15.96467 -15.28698 -15.22277 -14.76629 -14.08860 -13.90728 -13.52494 -13.15682 -13.00746 -12.81228 -12.68051 -12.00947 -11.94080 -11.65366 -11.49938 -11.40144 -11.31945 -11.07803 -11.04107 -10.92348 -10.66522 -10.46321 -10.40052 -10.31229 -10.00550 -9.69294 -9.60815 -9.13073 -8.56339 -8.00826 -7.57430 -6.18018 -4.26579 2.39826 3.09498 3.21745 3.30767 3.33994 4.30366 4.54275 4.81153 4.92673 5.09482 5.16097 5.37171 5.48056 5.57301 5.68275 5.68783 5.81160 5.81686 5.99994 6.03691 6.12521 6.14060 6.19624 6.28728 6.36740 6.44459 6.51753 6.55185 6.65669 6.77478 7.01945 7.15919 7.41887 7.54583 7.58670 7.62437 7.84936 8.09515 8.22621 8.76132 9.42456 9.59897 10.88880 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.006666 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.081482 B = 4199.585413 C = 4758.383764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C -0.122 4.122 4 H 0.097 0.903 5 C -0.148 4.148 6 C 0.087 3.913 7 H 0.114 0.886 8 C 0.480 3.520 9 O -0.497 6.497 10 O -0.515 6.515 11 N -0.494 5.494 12 C 0.023 3.977 13 C -0.133 4.133 14 C 0.258 3.742 15 O -0.580 6.580 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.892 5.892 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.039 3.961 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.400 0.600 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.377 0.623 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 5.514 -12.581 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.142 4.142 4 H 0.115 0.885 5 C -0.205 4.205 6 C -0.024 4.024 7 H 0.131 0.869 8 C 0.322 3.678 9 O -0.383 6.383 10 O -0.326 6.326 11 N -0.219 5.219 12 C -0.104 4.104 13 C -0.172 4.172 14 C 0.218 3.782 15 O -0.388 6.388 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.087 4.087 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.258 0.742 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.017 6.047 -12.363 14.090 hybrid contribution -1.248 -1.431 0.249 1.915 sum -4.265 4.616 -12.114 13.647 Atomic orbital electron populations 1.21768 0.95594 1.01581 1.01576 1.22204 0.96577 0.95950 1.03255 1.21861 0.93910 0.97755 1.00649 0.88548 1.21987 1.00462 1.00430 0.97651 1.21763 0.93963 0.99558 0.87077 0.86857 1.23538 0.77374 0.82201 0.84689 1.90760 1.34423 1.26454 1.86639 1.84675 1.70858 1.60293 1.16809 1.65205 1.48088 1.07889 1.00692 1.23530 1.01599 0.86999 0.98228 1.23026 1.01001 0.99798 0.93418 1.19330 0.83590 0.87597 0.87715 1.86139 1.43211 1.45690 1.63788 1.21615 1.04469 1.11518 1.19878 0.92111 1.24991 0.96055 0.95267 0.96789 1.69757 1.29510 1.16138 1.37731 0.86474 0.82270 0.78023 0.80830 1.19700 1.20974 1.20831 1.23585 0.94762 1.00773 0.89578 0.92880 0.93003 0.92381 0.88442 0.92853 0.92707 0.92706 0.91073 0.74226 0.93356 0.90216 0.92354 0.91631 0.77404 0.92453 0.90861 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.56 37.16 0.36 -1.58 16 2 C -0.14 -2.15 3.27 -26.73 -0.09 -2.23 16 3 C -0.12 -1.68 1.69 -90.62 -0.15 -1.84 16 4 H 0.10 1.38 6.10 -51.93 -0.32 1.07 16 5 C -0.15 -1.65 7.73 37.16 0.29 -1.36 16 6 C 0.09 1.35 2.87 -68.86 -0.20 1.15 16 7 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 8 C 0.48 7.20 5.92 36.01 0.21 7.42 16 9 O -0.50 -9.04 13.61 -18.75 -0.26 -9.29 16 10 O -0.51 -5.58 10.36 -39.24 -0.41 -5.99 16 11 N -0.49 -9.74 5.41 -223.88 -1.21 -10.95 16 12 C 0.02 0.48 3.91 -2.75 -0.01 0.47 16 13 C -0.13 -3.16 4.70 -25.37 -0.12 -3.28 16 14 C 0.26 6.38 0.95 -89.91 -0.09 6.30 16 15 O -0.58 -15.48 13.10 -35.23 -0.46 -15.94 16 16 C -0.54 -14.12 8.14 -34.44 -0.28 -14.40 16 17 H 0.06 1.58 7.78 -52.48 -0.41 1.17 16 18 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 19 N -0.89 -23.95 11.02 55.43 0.61 -23.34 16 20 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.04 0.83 4.74 -1.89 -0.01 0.82 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.58 6.62 -51.93 -0.34 0.24 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.78 3.57 -51.93 -0.19 1.59 16 29 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 30 H 0.05 0.56 6.89 -51.92 -0.36 0.21 16 31 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.79 5.82 -51.93 -0.30 0.49 16 33 H 0.40 2.71 9.10 45.56 0.41 3.12 16 34 H 0.05 0.94 3.40 -51.93 -0.18 0.76 16 35 H 0.08 1.78 6.68 -51.93 -0.35 1.43 16 36 H 0.06 1.42 7.51 -51.93 -0.39 1.03 16 37 H 0.06 1.67 7.99 -51.93 -0.41 1.25 16 38 H 0.38 10.16 7.48 45.56 0.34 10.50 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.07 1.29 4.17 -51.93 -0.22 1.07 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -29.51 301.92 -6.67 -36.18 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -4.30 Total: 16.03 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.18 Total: -6.75 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.60 Total: -34.29 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.12 Total: -31.22 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.51 -6.67 -36.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594876366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.980 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds