Wall clock time and date at job start Mon Mar 30 2020 01:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46979 * 2 1 4 4 H 1.08999 * 109.47250 * 55.00286 * 3 2 1 5 5 C 1.53003 * 109.47620 * 294.99811 * 3 2 1 6 6 C 1.53008 * 109.47158 * 174.99903 * 3 2 1 7 7 H 1.09002 * 109.46588 * 305.00331 * 6 3 2 8 8 C 1.50699 * 109.46745 * 64.99639 * 6 3 2 9 9 O 1.20833 * 119.99625 * 120.00470 * 8 6 3 10 10 O 1.34225 * 120.00597 * 300.00340 * 8 6 3 11 11 N 1.46893 * 109.47490 * 184.99977 * 6 3 2 12 12 C 1.48723 * 111.01321 * 64.49067 * 11 6 3 13 13 C 1.54385 * 104.51554 * 158.96949 * 12 11 6 14 14 C 1.54262 * 105.14994 * 336.26620 * 13 12 11 15 15 O 1.42897 * 110.32440 * 241.05931 * 14 13 12 16 16 C 1.50691 * 110.32348 * 118.84598 * 14 13 12 17 17 H 1.08000 * 120.00266 * 0.26846 * 16 14 13 18 18 C 1.37882 * 120.00166 * 180.27050 * 16 14 13 19 19 N 1.31521 * 119.99986 * 186.89256 * 18 16 14 20 20 Si 1.86797 * 119.99858 * 6.89184 * 18 16 14 21 21 H 1.48493 * 109.47165 * 94.09316 * 20 18 16 22 22 H 1.48502 * 109.47125 * 214.09572 * 20 18 16 23 23 H 1.48498 * 109.47077 * 334.09103 * 20 18 16 24 24 C 1.48557 * 111.00262 * 179.97438 * 11 6 3 25 25 H 1.09003 * 109.47565 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47435 * 300.00021 * 1 2 3 27 27 H 1.09000 * 109.47039 * 60.00044 * 1 2 3 28 28 H 1.09002 * 109.46714 * 240.00040 * 2 1 3 29 29 H 1.09000 * 109.46516 * 120.00011 * 2 1 3 30 30 H 1.09003 * 109.46658 * 59.99833 * 5 3 2 31 31 H 1.08996 * 109.47546 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.46824 * 300.00703 * 5 3 2 33 33 H 0.96700 * 117.00013 * 179.97438 * 10 8 6 34 34 H 1.08994 * 110.39061 * 40.24742 * 12 11 6 35 35 H 1.09003 * 110.50837 * 277.74885 * 12 11 6 36 36 H 1.09001 * 110.32059 * 217.32399 * 13 12 11 37 37 H 1.08996 * 110.32464 * 95.21907 * 13 12 11 38 38 H 0.96699 * 113.99860 * 298.53944 * 15 14 13 39 39 H 0.96998 * 119.99507 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.40922 * 82.18196 * 24 11 6 41 41 H 1.09005 * 110.41319 * 319.74324 * 24 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.8570 0.8799 1.0114 8 6 4.1705 0.8072 -1.0983 9 8 4.9246 1.4405 -1.7985 10 8 3.8725 -0.4637 -1.4107 11 7 4.0446 2.8275 0.2461 12 6 3.5531 3.4550 1.5017 13 6 4.5273 4.6253 1.7565 14 6 5.8227 4.2408 1.0125 15 8 6.9102 4.1320 1.9331 16 6 6.1368 5.2597 -0.0524 17 1 5.4864 6.1100 -0.1949 18 6 7.2547 5.1064 -0.8450 19 7 7.6044 6.0603 -1.6802 20 14 8.2723 3.5441 -0.7323 21 1 7.8181 2.5817 -1.7680 22 1 9.7045 3.8692 -0.9527 23 1 8.1035 2.9393 0.6134 24 6 5.5243 2.8688 0.3711 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.5489 2.1252 -1.3969 31 1 1.9990 3.1541 -1.3075 32 1 2.0699 1.5875 -2.1492 33 1 4.2850 -0.8287 -2.2054 34 1 3.5934 2.7410 2.3242 35 1 2.5373 3.8278 1.3701 36 1 4.7209 4.7311 2.8239 37 1 4.1196 5.5520 1.3527 38 1 7.1138 4.9538 2.4002 39 1 8.3910 5.9526 -2.2374 40 1 5.9909 2.7994 -0.6116 41 1 5.8740 2.0630 1.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594876368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:50 Heat of formation + Delta-G solvation = -127.079250 kcal Electronic energy + Delta-G solvation = -23041.420054 eV Core-core repulsion = 19728.749753 eV Total energy + Delta-G solvation = -3312.670301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56824 -38.47924 -36.65777 -35.92847 -34.45474 -32.20135 -31.11230 -29.09054 -28.13628 -26.75511 -24.26766 -24.07251 -21.82442 -21.01655 -19.79251 -19.04826 -17.70769 -17.05924 -16.62475 -15.70448 -15.69111 -15.12860 -14.65787 -14.46352 -14.10774 -13.58575 -13.40803 -13.07067 -12.86390 -12.59411 -12.41216 -12.22577 -11.87132 -11.77478 -11.68681 -11.57560 -11.33255 -11.13164 -10.91613 -10.67550 -10.57714 -10.47185 -10.27859 -9.96614 -9.90164 -9.68171 -8.92926 -8.54803 -8.27347 -8.00025 -6.03600 -4.10359 2.49750 3.07415 3.47906 3.56910 3.73253 4.20777 4.60261 4.73691 4.91420 5.02631 5.18162 5.23716 5.35877 5.41337 5.46745 5.52126 5.61832 5.67931 5.70263 5.73599 5.88523 5.94357 6.03139 6.08219 6.11991 6.17911 6.20189 6.44698 6.46400 6.59301 6.64477 6.76822 6.89686 7.13956 7.33484 7.45443 7.73258 8.19199 8.37268 8.92380 9.06304 9.62539 11.07377 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.007092 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.956430 B = 3947.222899 C = 4444.723387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.076 4.076 4 H 0.085 0.915 5 C -0.145 4.145 6 C 0.087 3.913 7 H 0.071 0.929 8 C 0.476 3.524 9 O -0.479 6.479 10 O -0.519 6.519 11 N -0.476 5.476 12 C 0.039 3.961 13 C -0.139 4.139 14 C 0.218 3.782 15 O -0.581 6.581 16 C -0.534 4.534 17 H 0.076 0.924 18 C 0.088 3.912 19 N -0.891 5.891 20 Si 0.865 3.135 21 H -0.281 1.281 22 H -0.300 1.300 23 H -0.229 1.229 24 C 0.042 3.958 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.403 0.597 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.363 0.637 39 H 0.263 0.737 40 H 0.105 0.895 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 -12.368 4.931 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.095 4.095 4 H 0.103 0.897 5 C -0.202 4.202 6 C -0.023 4.023 7 H 0.089 0.911 8 C 0.316 3.684 9 O -0.363 6.363 10 O -0.332 6.332 11 N -0.202 5.202 12 C -0.088 4.088 13 C -0.177 4.177 14 C 0.178 3.822 15 O -0.387 6.387 16 C -0.571 4.571 17 H 0.094 0.906 18 C -0.116 4.116 19 N -0.528 5.528 20 Si 0.693 3.307 21 H -0.208 1.208 22 H -0.227 1.227 23 H -0.152 1.152 24 C -0.085 4.085 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.261 0.739 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.210 0.790 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.327 -12.298 4.263 17.927 hybrid contribution 1.182 -0.905 0.177 1.499 sum -11.145 -13.203 4.440 17.839 Atomic orbital electron populations 1.21793 0.95855 1.01272 1.01822 1.21761 0.95694 0.95752 1.03340 1.21136 0.90956 0.97043 1.00361 0.89711 1.21845 1.00484 1.02393 0.95500 1.21562 0.96272 0.91570 0.92933 0.91103 1.23269 0.78918 0.79284 0.86979 1.90822 1.32782 1.62472 1.50235 1.84570 1.69583 1.29850 1.49183 1.65323 1.08459 1.11500 1.34934 1.23106 0.99531 0.96517 0.89663 1.22979 0.97291 0.98043 0.99366 1.19710 0.82781 0.92150 0.87563 1.86522 1.54634 1.38498 1.59028 1.21265 1.10459 1.08790 1.16588 0.90565 1.24933 0.96663 0.96131 0.93859 1.69948 1.25827 1.32621 1.24446 0.87144 0.78167 0.84810 0.80588 1.20775 1.22747 1.15204 1.23563 0.86294 0.97023 1.01614 0.92993 0.92982 0.92469 0.89918 0.92188 0.92613 0.90515 0.93463 0.73908 0.94572 0.90495 0.92209 0.90562 0.79030 0.92726 0.87693 0.95937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.13 -1.34 4.88 -26.73 -0.13 -1.47 16 3 C -0.08 -0.96 2.10 -90.62 -0.19 -1.15 16 4 H 0.08 1.00 6.84 -51.93 -0.35 0.65 16 5 C -0.15 -1.96 8.52 37.16 0.32 -1.64 16 6 C 0.09 1.38 1.56 -68.87 -0.11 1.28 16 7 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 8 C 0.48 8.04 5.84 36.00 0.21 8.25 16 9 O -0.48 -10.44 14.83 -18.76 -0.28 -10.72 16 10 O -0.52 -6.38 10.65 -39.24 -0.42 -6.80 16 11 N -0.48 -9.29 4.45 -223.27 -0.99 -10.28 16 12 C 0.04 0.66 5.54 -2.09 -0.01 0.65 16 13 C -0.14 -2.70 6.43 -25.35 -0.16 -2.86 16 14 C 0.22 5.18 0.90 -90.40 -0.08 5.10 16 15 O -0.58 -13.41 10.15 -35.23 -0.36 -13.77 16 16 C -0.53 -15.20 8.82 -34.44 -0.30 -15.50 16 17 H 0.08 2.34 7.60 -52.49 -0.40 1.94 16 18 C 0.09 2.64 5.43 -17.82 -0.10 2.54 16 19 N -0.89 -28.09 13.96 55.43 0.77 -27.31 16 20 Si 0.86 23.32 24.06 -169.99 -4.09 19.23 16 21 H -0.28 -7.79 7.09 56.52 0.40 -7.39 16 22 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 23 H -0.23 -5.98 5.21 56.52 0.29 -5.69 16 24 C 0.04 0.98 3.17 -2.19 -0.01 0.97 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.08 0.91 5.77 -51.93 -0.30 0.61 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 31 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 32 H 0.05 0.67 7.07 -51.93 -0.37 0.30 16 33 H 0.40 3.40 9.10 45.56 0.41 3.82 16 34 H 0.04 0.55 7.91 -51.93 -0.41 0.14 16 35 H 0.08 1.13 7.59 -51.93 -0.39 0.74 16 36 H 0.06 1.03 7.98 -51.93 -0.41 0.62 16 37 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 38 H 0.36 7.21 9.08 45.56 0.41 7.63 16 39 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 40 H 0.11 2.79 3.04 -51.93 -0.16 2.64 16 41 H 0.02 0.51 7.91 -51.93 -0.41 0.10 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -34.91 309.26 -5.68 -40.59 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.77 Total: 9.19 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.79 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.22 Total: -37.59 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.05 Total: -31.28 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.09 Total: 19.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.91 -5.68 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594876368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.493 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds