Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46979 * 2 1 4 4 H 1.08999 * 109.47250 * 55.00286 * 3 2 1 5 5 C 1.53003 * 109.47620 * 294.99811 * 3 2 1 6 6 C 1.53008 * 109.47158 * 174.99903 * 3 2 1 7 7 H 1.09002 * 109.46588 * 305.00331 * 6 3 2 8 8 C 1.50699 * 109.46745 * 64.99639 * 6 3 2 9 9 O 1.20833 * 119.99625 * 120.00470 * 8 6 3 10 10 O 1.34225 * 120.00597 * 300.00340 * 8 6 3 11 11 N 1.46893 * 109.47490 * 184.99977 * 6 3 2 12 12 C 1.48723 * 111.01321 * 64.49067 * 11 6 3 13 13 C 1.54385 * 104.51554 * 158.96949 * 12 11 6 14 14 C 1.54262 * 105.14994 * 336.26620 * 13 12 11 15 15 O 1.42897 * 110.32440 * 241.05931 * 14 13 12 16 16 C 1.50691 * 110.32348 * 118.84598 * 14 13 12 17 17 H 1.08000 * 120.00266 * 0.26846 * 16 14 13 18 18 C 1.37882 * 120.00166 * 180.27050 * 16 14 13 19 19 N 1.31521 * 119.99986 * 186.89256 * 18 16 14 20 20 Si 1.86797 * 119.99858 * 6.89184 * 18 16 14 21 21 H 1.48493 * 109.47165 * 94.09316 * 20 18 16 22 22 H 1.48502 * 109.47125 * 214.09572 * 20 18 16 23 23 H 1.48498 * 109.47077 * 334.09103 * 20 18 16 24 24 C 1.48557 * 111.00262 * 179.97438 * 11 6 3 25 25 H 1.09003 * 109.47565 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47435 * 300.00021 * 1 2 3 27 27 H 1.09000 * 109.47039 * 60.00044 * 1 2 3 28 28 H 1.09002 * 109.46714 * 240.00040 * 2 1 3 29 29 H 1.09000 * 109.46516 * 120.00011 * 2 1 3 30 30 H 1.09003 * 109.46658 * 59.99833 * 5 3 2 31 31 H 1.08996 * 109.47546 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.46824 * 300.00703 * 5 3 2 33 33 H 0.96700 * 117.00013 * 179.97438 * 10 8 6 34 34 H 1.08994 * 110.39061 * 40.24742 * 12 11 6 35 35 H 1.09003 * 110.50837 * 277.74885 * 12 11 6 36 36 H 1.09001 * 110.32059 * 217.32399 * 13 12 11 37 37 H 1.08996 * 110.32464 * 95.21907 * 13 12 11 38 38 H 0.96699 * 113.99860 * 298.53944 * 15 14 13 39 39 H 0.96998 * 119.99507 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.40922 * 82.18196 * 24 11 6 41 41 H 1.09005 * 110.41319 * 319.74324 * 24 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.8570 0.8799 1.0114 8 6 4.1705 0.8072 -1.0983 9 8 4.9246 1.4405 -1.7985 10 8 3.8725 -0.4637 -1.4107 11 7 4.0446 2.8275 0.2461 12 6 3.5531 3.4550 1.5017 13 6 4.5273 4.6253 1.7565 14 6 5.8227 4.2408 1.0125 15 8 6.9102 4.1320 1.9331 16 6 6.1368 5.2597 -0.0524 17 1 5.4864 6.1100 -0.1949 18 6 7.2547 5.1064 -0.8450 19 7 7.6044 6.0603 -1.6802 20 14 8.2723 3.5441 -0.7323 21 1 7.8181 2.5817 -1.7680 22 1 9.7045 3.8692 -0.9527 23 1 8.1035 2.9393 0.6134 24 6 5.5243 2.8688 0.3711 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.5489 2.1252 -1.3969 31 1 1.9990 3.1541 -1.3075 32 1 2.0699 1.5875 -2.1492 33 1 4.2850 -0.8287 -2.2054 34 1 3.5934 2.7410 2.3242 35 1 2.5373 3.8278 1.3701 36 1 4.7209 4.7311 2.8239 37 1 4.1196 5.5520 1.3527 38 1 7.1138 4.9538 2.4002 39 1 8.3910 5.9526 -2.2374 40 1 5.9909 2.7994 -0.6116 41 1 5.8740 2.0630 1.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594876368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = -156.534756 kcal Electronic energy + Delta-G solvation = -23042.697340 eV Core-core repulsion = 19728.749753 eV Total energy + Delta-G solvation = -3313.947588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87122 -40.00319 -37.92617 -37.21097 -35.90212 -34.44498 -32.39533 -30.28581 -29.85657 -28.08930 -26.23011 -25.05637 -23.18843 -22.21612 -21.43724 -20.32190 -19.12863 -18.95139 -17.89765 -17.27136 -16.98695 -16.93666 -16.09773 -15.81800 -15.33188 -15.10120 -14.85693 -14.67638 -14.28970 -13.97865 -13.91261 -13.78465 -13.45195 -13.13268 -12.89849 -12.77756 -12.71570 -12.56241 -12.36279 -12.16040 -11.96516 -11.79325 -11.65118 -11.48824 -11.31390 -11.13599 -10.98525 -10.76252 -10.22138 -9.42181 -8.36141 -6.43008 1.21047 1.30655 1.36821 1.56049 1.93560 2.36174 2.83375 3.03159 3.64682 3.72313 3.89373 3.97741 4.12048 4.20404 4.29952 4.30769 4.35435 4.40793 4.61130 4.67357 4.74222 4.77691 4.90426 4.96449 5.05968 5.07603 5.16765 5.24745 5.30180 5.33735 5.40336 5.54889 5.59185 5.62748 5.64568 5.86833 6.00825 6.12265 6.66076 7.02307 7.19678 7.37418 8.78842 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.007092 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.956430 B = 3947.222899 C = 4444.723387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.068 4.068 4 H 0.102 0.898 5 C -0.142 4.142 6 C 0.081 3.919 7 H 0.092 0.908 8 C 0.480 3.520 9 O -0.538 6.538 10 O -0.499 6.499 11 N -0.497 5.497 12 C 0.045 3.955 13 C -0.134 4.134 14 C 0.210 3.790 15 O -0.584 6.584 16 C -0.526 4.526 17 H 0.040 0.960 18 C 0.036 3.964 19 N -0.938 5.938 20 Si 0.926 3.074 21 H -0.298 1.298 22 H -0.301 1.301 23 H -0.213 1.213 24 C 0.046 3.954 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.421 0.579 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.376 0.624 39 H 0.263 0.737 40 H 0.069 0.931 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 -14.721 7.185 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.086 4.086 4 H 0.120 0.880 5 C -0.199 4.199 6 C -0.029 4.029 7 H 0.109 0.891 8 C 0.323 3.677 9 O -0.427 6.427 10 O -0.312 6.312 11 N -0.223 5.223 12 C -0.082 4.082 13 C -0.172 4.172 14 C 0.170 3.830 15 O -0.392 6.392 16 C -0.564 4.564 17 H 0.059 0.941 18 C -0.163 4.163 19 N -0.578 5.578 20 Si 0.754 3.246 21 H -0.226 1.226 22 H -0.229 1.229 23 H -0.135 1.135 24 C -0.081 4.081 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.282 0.718 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.225 0.775 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.349 -14.681 6.548 21.548 hybrid contribution 1.704 -0.180 -0.544 1.798 sum -12.645 -14.861 6.004 20.416 Atomic orbital electron populations 1.21776 0.94395 1.02171 1.02161 1.21718 0.96860 0.93901 1.03526 1.21179 0.88474 0.98785 1.00200 0.87973 1.21805 1.01918 1.00399 0.95787 1.21802 0.98171 0.89807 0.93084 0.89085 1.23587 0.77592 0.79896 0.86645 1.90822 1.35508 1.64100 1.52252 1.84525 1.68949 1.27665 1.50091 1.65204 1.06007 1.14335 1.36778 1.23183 0.99748 0.95779 0.89457 1.22877 0.95494 0.98575 1.00301 1.19688 0.84839 0.91505 0.86971 1.86454 1.54677 1.39419 1.58631 1.21612 1.08897 1.08583 1.17273 0.94130 1.25641 0.98279 0.98395 0.94021 1.70065 1.26939 1.34563 1.26274 0.86209 0.76365 0.81409 0.80628 1.22631 1.22896 1.13486 1.23246 0.89023 0.96406 0.99455 0.91896 0.92115 0.92667 0.90619 0.91129 0.90127 0.93521 0.94895 0.71799 0.91656 0.88000 0.89412 0.92126 0.77500 0.92819 0.91331 0.95435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.12 -2.09 4.88 30.59 0.15 -1.94 16 3 C -0.07 -1.48 2.10 -10.79 -0.02 -1.51 16 4 H 0.10 1.93 6.84 -2.39 -0.02 1.91 16 5 C -0.14 -3.58 8.52 71.98 0.61 -2.97 16 6 C 0.08 2.37 1.56 44.17 0.07 2.44 16 7 H 0.09 2.34 7.98 -2.39 -0.02 2.32 16 8 C 0.48 15.66 5.84 71.24 0.42 16.08 16 9 O -0.54 -23.79 14.83 21.94 0.33 -23.47 16 10 O -0.50 -11.17 10.65 -51.37 -0.55 -11.71 16 11 N -0.50 -18.54 4.45 -860.31 -3.82 -22.36 16 12 C 0.04 1.36 5.54 86.42 0.48 1.83 16 13 C -0.13 -4.94 6.43 31.49 0.20 -4.73 16 14 C 0.21 9.81 0.90 -10.65 -0.01 9.80 16 15 O -0.58 -25.89 10.15 -148.98 -1.51 -27.40 16 16 C -0.53 -30.67 8.82 25.60 0.23 -30.44 16 17 H 0.04 2.60 7.60 -2.91 -0.02 2.57 16 18 C 0.04 2.20 5.43 84.65 0.46 2.66 16 19 N -0.94 -61.45 13.96 21.45 0.30 -61.15 16 20 Si 0.93 49.95 24.06 68.60 1.65 51.60 16 21 H -0.30 -16.82 7.09 99.48 0.71 -16.12 16 22 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 23 H -0.21 -10.75 5.21 99.48 0.52 -10.24 16 24 C 0.05 2.12 3.17 86.44 0.27 2.39 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.77 6.56 -2.39 -0.02 0.76 16 28 H 0.08 1.40 5.77 -2.39 -0.01 1.39 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.59 6.56 -2.39 -0.02 1.58 16 31 H 0.05 1.46 7.75 -2.39 -0.02 1.44 16 32 H 0.03 0.90 7.07 -2.38 -0.02 0.88 16 33 H 0.42 6.33 9.10 -74.06 -0.67 5.66 16 34 H 0.07 1.63 7.91 -2.39 -0.02 1.61 16 35 H 0.10 2.59 7.59 -2.39 -0.02 2.57 16 36 H 0.09 2.71 7.98 -2.39 -0.02 2.69 16 37 H 0.06 2.39 7.42 -2.39 -0.02 2.37 16 38 H 0.38 14.28 9.08 -74.06 -0.67 13.61 16 39 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 40 H 0.07 3.68 3.04 -2.39 -0.01 3.68 16 41 H 0.03 1.20 7.91 -2.38 -0.02 1.18 16 Total: -1.00 -78.98 309.26 -0.54 -79.52 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.48 Total: 22.66 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.55 Total: -7.69 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -3.53 Total: -83.51 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -1.73 Total: -62.58 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.65 Total: 51.60 kcal Total: -78.98 -0.54 -79.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594876368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.013 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds