Wall clock time and date at job start Mon Mar 30 2020 01:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47475 * 2 1 4 4 H 1.08998 * 109.46824 * 54.02742 * 3 2 1 5 5 C 1.53004 * 109.46885 * 294.03209 * 3 2 1 6 6 C 1.52992 * 109.47259 * 174.03029 * 3 2 1 7 7 H 1.09004 * 109.47019 * 177.67959 * 6 3 2 8 8 C 1.50705 * 109.47045 * 57.68043 * 6 3 2 9 9 O 1.20819 * 119.99888 * 267.09925 * 8 6 3 10 10 O 1.34228 * 119.99722 * 87.10208 * 8 6 3 11 11 N 1.46902 * 109.47452 * 297.68287 * 6 3 2 12 12 C 1.47854 * 110.99389 * 302.51853 * 11 6 3 13 13 C 1.54908 * 104.79107 * 213.63514 * 12 11 6 14 14 C 1.55139 * 101.65678 * 37.07256 * 13 12 11 15 15 O 1.42901 * 110.85466 * 82.79350 * 14 13 12 16 16 C 1.50698 * 110.71031 * 205.96304 * 14 13 12 17 17 H 1.07993 * 120.00095 * 113.59546 * 16 14 13 18 18 C 1.37875 * 119.99807 * 293.60233 * 16 14 13 19 19 N 1.31519 * 120.00138 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00263 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47228 * 59.99229 * 20 18 16 22 22 H 1.48500 * 109.47432 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46741 * 299.99935 * 20 18 16 24 24 C 1.47441 * 111.00219 * 181.67682 * 11 6 3 25 25 H 1.09006 * 109.47531 * 300.00714 * 1 2 3 26 26 H 1.09002 * 109.46956 * 59.99983 * 1 2 3 27 27 H 1.09000 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47136 * 239.99540 * 2 1 3 29 29 H 1.09004 * 109.46859 * 119.99479 * 2 1 3 30 30 H 1.08996 * 109.47235 * 183.20654 * 5 3 2 31 31 H 1.08998 * 109.46787 * 303.20287 * 5 3 2 32 32 H 1.09000 * 109.47017 * 63.20303 * 5 3 2 33 33 H 0.96703 * 116.99965 * 179.97438 * 10 8 6 34 34 H 1.09001 * 110.37381 * 332.46517 * 12 11 6 35 35 H 1.08993 * 110.37105 * 94.80938 * 12 11 6 36 36 H 1.09001 * 110.99491 * 278.97738 * 13 12 11 37 37 H 1.09001 * 111.01878 * 155.17659 * 13 12 11 38 38 H 0.96700 * 113.99788 * 66.31907 * 15 14 13 39 39 H 0.97002 * 120.00084 * 180.02562 * 19 18 16 40 40 H 1.08988 * 109.88866 * 242.66053 * 24 11 6 41 41 H 1.09007 * 109.88588 * 3.85292 * 24 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5920 1.9862 0.8317 5 6 1.6562 2.1191 -1.3175 6 6 3.5626 1.4450 0.1500 7 1 3.9300 2.4705 0.1087 8 6 4.1789 0.6451 -0.9686 9 8 4.4179 -0.5288 -0.8113 10 8 4.4624 1.2367 -2.1397 11 7 3.9286 0.8453 1.4401 12 6 3.2914 1.5695 2.5607 13 6 4.3172 1.4877 3.7186 14 6 5.6618 1.6207 2.9563 15 8 5.9678 2.9928 2.7002 16 6 6.7779 0.9623 3.7256 17 1 7.2633 0.0837 3.3272 18 6 7.1793 1.4817 4.9381 19 7 6.5884 2.5519 5.4230 20 14 8.5623 0.6653 5.8921 21 1 9.8002 0.6711 5.0717 22 1 8.8014 1.4115 7.1535 23 1 8.1852 -0.7357 6.2090 24 6 5.3896 0.8670 1.6374 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.0683 3.1279 -1.3415 31 1 2.0566 1.5432 -2.1518 32 1 0.5703 2.1683 -1.3978 33 1 4.8573 0.6829 -2.8271 34 1 3.1104 2.6089 2.2868 35 1 2.3585 1.0831 2.8451 36 1 4.2520 0.5278 4.2309 37 1 4.1824 2.3118 4.4193 38 1 6.1471 3.5110 3.4967 39 1 6.8711 2.9175 6.2759 40 1 5.7694 -0.1522 1.7076 41 1 5.8681 1.3871 0.8075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594876371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:54 Heat of formation + Delta-G solvation = -147.518312 kcal Electronic energy + Delta-G solvation = -22728.924355 eV Core-core repulsion = 19415.367749 eV Total energy + Delta-G solvation = -3313.556605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50105 -38.35881 -36.46218 -35.77098 -34.15630 -32.08456 -30.86751 -29.12338 -28.20919 -26.28783 -24.55348 -23.91998 -21.62633 -20.83803 -19.41433 -19.02042 -17.78235 -17.14845 -16.41675 -15.86775 -15.07559 -14.90948 -14.79550 -14.22636 -14.08174 -13.60971 -13.41970 -13.23658 -12.74030 -12.19282 -12.02052 -11.92477 -11.89239 -11.64028 -11.57401 -11.28176 -11.18638 -11.14423 -10.88411 -10.57325 -10.53508 -10.46808 -10.43636 -10.25008 -9.96680 -9.91029 -9.30446 -8.62466 -8.12942 -7.73909 -6.22395 -4.28966 2.50561 3.17309 3.25250 3.29468 3.33367 4.29494 4.42524 4.80454 4.95126 5.04345 5.17442 5.44412 5.50769 5.52646 5.56699 5.63625 5.68488 5.75053 5.95314 5.98971 6.05596 6.07591 6.13361 6.21730 6.23455 6.32979 6.43289 6.45416 6.63649 6.71516 6.95107 7.01086 7.35979 7.45183 7.55127 7.58868 7.81264 8.12345 8.21214 8.72195 9.38479 9.49822 10.85049 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.005417 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.240928 B = 5167.997157 C = 5472.614344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.151 4.151 6 C 0.096 3.904 7 H 0.072 0.928 8 C 0.485 3.515 9 O -0.493 6.493 10 O -0.522 6.522 11 N -0.508 5.508 12 C 0.045 3.955 13 C -0.130 4.130 14 C 0.237 3.763 15 O -0.593 6.593 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.060 3.940 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 -0.304 -10.282 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.099 4.099 4 H 0.106 0.894 5 C -0.208 4.208 6 C -0.015 4.015 7 H 0.090 0.910 8 C 0.326 3.674 9 O -0.378 6.378 10 O -0.333 6.333 11 N -0.234 5.234 12 C -0.082 4.082 13 C -0.169 4.169 14 C 0.196 3.804 15 O -0.403 6.403 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.131 4.131 19 N -0.541 5.541 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.067 4.067 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.261 0.739 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.092 -0.980 -10.409 14.531 hybrid contribution 1.472 0.236 0.694 1.644 sum -8.620 -0.745 -9.714 13.009 Atomic orbital electron populations 1.21817 0.96283 1.01288 1.01399 1.21554 0.94967 0.95411 1.03511 1.21203 0.91528 0.97983 0.99204 0.89352 1.21938 1.01398 1.00791 0.96710 1.21477 0.95695 0.96096 0.88195 0.90991 1.23358 0.74837 0.86889 0.82355 1.90691 1.48565 1.17362 1.81153 1.84585 1.75823 1.47984 1.24938 1.63608 1.09632 1.51111 0.99027 1.23096 0.98213 0.95395 0.91503 1.23174 0.95572 1.02079 0.96077 1.19706 0.91491 0.80127 0.89044 1.86068 1.92550 1.23115 1.38593 1.21565 1.18352 1.12878 1.04161 0.91978 1.24994 0.96416 0.94802 0.96916 1.69575 1.41832 1.22213 1.20484 0.86500 0.82182 0.79522 0.78904 1.20122 1.21163 1.20042 1.22902 0.85236 1.00573 0.98019 0.92805 0.93064 0.93014 0.92642 0.89733 0.92300 0.92463 0.92064 0.73923 0.94093 0.91470 0.91549 0.90608 0.76369 0.92211 0.89690 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.69 37.15 0.36 -1.26 16 2 C -0.12 -1.57 4.77 -26.73 -0.13 -1.70 16 3 C -0.08 -1.08 1.95 -90.62 -0.18 -1.25 16 4 H 0.09 1.16 6.86 -51.93 -0.36 0.80 16 5 C -0.15 -1.69 8.48 37.16 0.31 -1.37 16 6 C 0.10 1.59 1.35 -68.86 -0.09 1.49 16 7 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 8 C 0.49 7.96 4.70 36.01 0.17 8.12 16 9 O -0.49 -9.39 16.38 -18.74 -0.31 -9.69 16 10 O -0.52 -6.74 12.39 -39.25 -0.49 -7.23 16 11 N -0.51 -9.82 3.97 -224.67 -0.89 -10.71 16 12 C 0.04 0.84 5.32 -2.29 -0.01 0.83 16 13 C -0.13 -2.95 5.67 -24.59 -0.14 -3.09 16 14 C 0.24 5.88 0.85 -89.95 -0.08 5.80 16 15 O -0.59 -15.33 13.09 -35.23 -0.46 -15.79 16 16 C -0.53 -14.35 8.21 -34.44 -0.28 -14.63 16 17 H 0.06 1.68 7.53 -52.49 -0.40 1.29 16 18 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 19 N -0.90 -23.87 10.69 55.43 0.59 -23.27 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.06 1.35 5.34 -2.83 -0.02 1.33 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.49 6.67 -51.93 -0.35 0.15 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.79 7.08 -51.93 -0.37 0.42 16 29 H 0.08 1.32 7.50 -51.93 -0.39 0.94 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 32 H 0.06 0.59 6.75 -51.93 -0.35 0.24 16 33 H 0.40 3.40 9.10 45.56 0.41 3.82 16 34 H 0.04 0.75 7.52 -51.93 -0.39 0.36 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 37 H 0.08 1.79 7.76 -51.93 -0.40 1.39 16 38 H 0.38 10.12 6.98 45.56 0.32 10.44 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.08 2.02 7.63 -51.94 -0.40 1.62 16 41 H 0.04 0.92 7.04 -51.93 -0.37 0.56 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -29.15 321.21 -6.95 -36.10 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.04 Total: 13.94 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.17 Total: -3.95 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.30 Total: -33.99 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.25 Total: -32.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.15 -6.95 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594876371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.416 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds