Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48503 * 109.47066 * 239.99830 * 3 2 1 5 5 H 1.48496 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47167 * 120.00345 * 3 2 1 7 7 C 1.37875 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47567 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47188 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99915 * 45.79054 * 12 11 10 14 14 C 1.53032 * 109.52098 * 185.84118 * 13 12 11 15 15 C 1.53119 * 109.28205 * 300.81949 * 14 13 12 16 16 C 1.52999 * 109.57836 * 177.59260 * 15 14 13 17 17 H 1.09000 * 109.46748 * 300.28621 * 16 15 14 18 18 O 1.42904 * 109.47078 * 180.28646 * 16 15 14 19 19 C 1.50699 * 109.46956 * 60.28377 * 16 15 14 20 20 O 1.20834 * 119.99441 * 115.00246 * 19 16 15 21 21 O 1.34222 * 120.00292 * 295.00199 * 19 16 15 22 22 C 1.53124 * 109.15796 * 57.65213 * 15 14 13 23 23 C 1.46844 * 110.99887 * 170.00138 * 12 11 10 24 24 H 0.96999 * 120.00082 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47153 * 59.99528 * 9 7 2 26 26 H 1.09012 * 109.46933 * 300.00494 * 9 7 2 27 27 H 1.09002 * 109.46844 * 60.00193 * 10 9 7 28 28 H 1.08996 * 109.46961 * 300.00044 * 10 9 7 29 29 H 1.08993 * 109.47007 * 60.00172 * 11 10 9 30 30 H 1.08996 * 109.47340 * 299.99977 * 11 10 9 31 31 H 1.09005 * 109.46314 * 305.85713 * 13 12 11 32 32 H 1.08998 * 109.46244 * 65.82281 * 13 12 11 33 33 H 1.09004 * 109.50441 * 180.87586 * 14 13 12 34 34 H 1.09002 * 109.53781 * 60.78566 * 14 13 12 35 35 H 1.09001 * 109.51997 * 297.75401 * 15 14 13 36 36 H 0.96694 * 113.99665 * 300.00258 * 18 16 15 37 37 H 0.96697 * 117.00168 * 180.02562 * 21 19 16 38 38 H 1.08997 * 109.50392 * 182.40446 * 22 15 14 39 39 H 1.09000 * 109.49712 * 62.29080 * 22 15 14 40 40 H 1.08995 * 109.46267 * 294.17336 * 23 12 11 41 41 H 1.09000 * 109.46172 * 54.15831 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1037 0.0007 13 6 3.5034 -5.8819 0.9834 14 6 4.5535 -6.9878 0.8553 15 6 3.8888 -8.3463 1.0941 16 6 4.9200 -9.4613 0.9086 17 1 5.3194 -9.4217 -0.1048 18 8 4.2957 -10.7284 1.1254 19 6 6.0416 -9.2779 1.8982 20 8 6.2245 -10.1013 2.7634 21 8 6.8374 -8.2000 1.8185 22 6 2.7485 -8.5315 0.0891 23 6 1.7507 -7.3808 0.2394 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8534 -5.0451 -0.8896 30 1 0.8539 -5.0446 0.8903 31 1 3.9707 -4.9144 0.7998 32 1 3.0814 -5.8964 1.9882 33 1 5.3386 -6.8316 1.5952 34 1 4.9865 -6.9652 -0.1448 35 1 3.4904 -8.3836 2.1080 36 1 3.9169 -10.8341 2.0088 37 1 7.5435 -8.1261 2.4750 38 1 2.2439 -9.4782 0.2816 39 1 3.1524 -8.5330 -0.9233 40 1 1.3370 -7.3883 1.2477 41 1 0.9450 -7.5021 -0.4847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -184.190600 kcal Electronic energy + Delta-G solvation = -21197.456769 eV Core-core repulsion = 17882.309934 eV Total energy + Delta-G solvation = -3315.146835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72515 -40.09010 -38.14927 -37.14915 -36.09323 -34.71929 -32.83487 -31.67554 -29.56827 -27.75922 -25.25421 -24.29713 -23.56183 -22.25850 -21.41505 -20.77269 -19.24689 -18.64912 -18.48757 -17.36645 -16.97181 -16.60505 -16.29224 -16.13703 -15.72237 -15.44506 -14.88634 -14.73701 -14.46411 -14.15301 -13.95104 -13.69805 -13.38280 -13.19104 -12.89859 -12.70795 -12.62399 -12.54023 -12.41951 -12.26357 -12.08090 -11.71143 -11.66168 -11.46436 -11.39167 -11.18704 -11.00377 -10.84068 -10.53693 -9.21065 -8.19609 -6.30866 1.06199 1.40574 1.43787 1.51678 2.00407 2.41463 3.00747 3.13525 3.14790 3.51827 3.77008 3.94246 4.10779 4.21067 4.24301 4.32635 4.39796 4.47688 4.54391 4.66169 4.70577 4.73199 4.86436 4.96545 5.03381 5.04148 5.11316 5.20022 5.28711 5.33490 5.45788 5.52036 5.55234 5.74653 5.85661 6.12948 6.25775 6.30167 6.46144 6.86114 6.93069 7.38486 8.92211 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031651 B = 0.003271 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.426645 B = 8559.039071 C = 9282.889477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.066 3.934 12 N -0.541 5.541 13 C 0.047 3.953 14 C -0.108 4.108 15 C -0.106 4.106 16 C 0.132 3.868 17 H 0.152 0.848 18 O -0.540 6.540 19 C 0.458 3.542 20 O -0.549 6.549 21 O -0.501 6.501 22 C -0.094 4.094 23 C 0.051 3.949 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.012 1.012 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.394 0.606 37 H 0.425 0.575 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.872 -19.886 2.761 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.061 4.061 12 N -0.266 5.266 13 C -0.081 4.081 14 C -0.145 4.145 15 C -0.125 4.125 16 C 0.071 3.929 17 H 0.169 0.831 18 O -0.347 6.347 19 C 0.302 3.698 20 O -0.440 6.440 21 O -0.314 6.314 22 C -0.132 4.132 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.006 0.994 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.244 0.756 37 H 0.287 0.713 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.869 -20.161 1.641 22.963 hybrid contribution -0.160 1.335 1.936 2.358 sum 10.709 -18.826 3.577 21.952 Atomic orbital electron populations 1.70093 1.07854 1.27842 1.51707 1.26000 0.95772 1.03427 0.94716 0.85497 0.78273 0.78011 0.79255 1.19085 1.20890 1.19097 1.21674 0.93568 0.92365 1.50533 0.92127 1.18970 0.94420 0.93175 0.94632 1.21539 0.98094 0.92858 1.00805 1.22018 0.94048 0.90290 0.99793 1.62062 1.12477 1.02056 1.50031 1.22230 0.93106 1.00154 0.92604 1.21716 0.96982 0.91700 1.04116 1.21770 0.95646 0.94125 1.00951 1.21640 0.88090 0.84915 0.98248 0.83109 1.86637 1.75431 1.33336 1.39272 1.24817 0.82929 0.77837 0.84240 1.90732 1.71538 1.44589 1.37114 1.84608 1.44547 1.43398 1.58890 1.21489 0.94839 0.97345 0.99515 1.22175 0.96886 0.89058 0.99572 0.92774 0.99043 0.99363 0.92669 0.92695 0.91407 0.96096 0.90693 0.95915 0.89057 0.90264 0.90615 0.75556 0.71287 0.89375 0.90459 0.95391 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.10 -3.93 4.40 30.59 0.13 -3.79 16 11 C 0.07 2.28 5.27 86.30 0.46 2.74 16 12 N -0.54 -15.00 4.81 -896.38 -4.31 -19.31 16 13 C 0.05 1.19 4.85 86.32 0.42 1.61 16 14 C -0.11 -1.95 4.77 30.64 0.15 -1.81 16 15 C -0.11 -1.60 2.01 -10.71 -0.02 -1.62 16 16 C 0.13 1.82 3.10 29.85 0.09 1.92 16 17 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 18 O -0.54 -8.15 12.37 -129.95 -1.61 -9.76 16 19 C 0.46 7.35 7.51 71.24 0.53 7.88 16 20 O -0.55 -12.42 17.08 28.36 0.48 -11.94 16 21 O -0.50 -5.76 10.71 -51.34 -0.55 -6.31 16 22 C -0.09 -1.53 5.20 30.65 0.16 -1.38 16 23 C 0.05 1.12 5.42 86.33 0.47 1.59 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 27 H 0.05 2.20 6.21 -2.39 -0.01 2.19 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.07 2.14 5.81 -2.38 -0.01 2.13 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.50 5.73 -2.38 -0.01 1.49 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.39 4.27 8.79 -74.06 -0.65 3.61 16 37 H 0.42 1.78 9.10 -74.06 -0.67 1.10 16 38 H 0.09 1.21 7.76 -2.39 -0.02 1.19 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 1.68 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -71.31 328.27 -0.73 -72.04 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -0.29 Total: 7.96 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.23 Total: -21.92 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -4.02 Total: -76.37 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.67 Total: -28.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.31 -0.73 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.154 kcal (2) G-P(sol) polarization free energy of solvation -71.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds