Wall clock time and date at job start Mon Mar 30 2020 00:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99941 * 2 1 4 4 H 1.48504 * 109.47465 * 270.00258 * 3 2 1 5 5 H 1.48502 * 109.47549 * 30.00239 * 3 2 1 6 6 H 1.48502 * 109.47283 * 150.00349 * 3 2 1 7 7 C 1.37873 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46882 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46780 * 180.02562 * 11 10 9 13 13 C 1.46898 * 110.99996 * 180.02562 * 12 11 10 14 14 H 1.09007 * 109.46743 * 325.00289 * 13 12 11 15 15 C 1.50705 * 109.46991 * 84.99732 * 13 12 11 16 16 O 1.20820 * 120.00102 * 0.02562 * 15 13 12 17 17 O 1.34228 * 119.99316 * 180.02562 * 15 13 12 18 18 C 1.52997 * 109.47273 * 205.00268 * 13 12 11 19 19 C 1.53175 * 109.54337 * 179.97438 * 18 13 12 20 20 C 1.53092 * 109.16344 * 176.84735 * 19 18 13 21 21 O 1.42905 * 109.41215 * 302.38824 * 20 19 18 22 22 C 1.42905 * 114.09831 * 61.16158 * 21 20 19 23 23 C 1.53098 * 109.41155 * 298.83847 * 22 21 20 24 24 H 0.97003 * 119.99519 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46992 * 60.00135 * 9 7 2 26 26 H 1.08991 * 109.47149 * 300.00237 * 9 7 2 27 27 H 1.09001 * 109.46794 * 60.00356 * 10 9 7 28 28 H 1.08995 * 109.47190 * 300.00001 * 10 9 7 29 29 H 1.09001 * 109.47048 * 60.00594 * 11 10 9 30 30 H 1.08991 * 109.47339 * 300.00545 * 11 10 9 31 31 H 1.00895 * 110.99946 * 303.95569 * 12 11 10 32 32 H 0.96706 * 116.99861 * 180.02562 * 17 15 13 33 33 H 1.08996 * 109.54194 * 59.82171 * 18 13 12 34 34 H 1.09004 * 109.52714 * 56.93754 * 19 18 13 35 35 H 1.09001 * 109.57654 * 296.78485 * 19 18 13 36 36 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 37 37 H 1.09000 * 109.48212 * 62.37239 * 20 19 18 38 38 H 1.09000 * 109.47932 * 58.81878 * 22 21 20 39 39 H 1.08993 * 109.48024 * 178.86013 * 22 21 20 40 40 H 1.08996 * 109.52270 * 297.70307 * 23 22 21 41 41 H 1.08995 * 109.57012 * 177.54155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7345 -7.3950 -0.0018 14 1 0.8215 -7.3131 0.5880 15 6 1.3856 -7.7772 -1.4172 16 8 1.6895 -7.0489 -2.3321 17 8 0.7371 -8.9268 -1.6614 18 6 2.6408 -8.4667 0.6073 19 6 1.9119 -9.8139 0.6086 20 6 2.8537 -10.8943 1.1465 21 8 4.0355 -10.9365 0.3442 22 6 4.7836 -9.7189 0.3429 23 6 3.9193 -8.5912 -0.2273 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 0.8526 -5.0447 -0.8905 30 1 0.8545 -5.0450 0.8894 31 1 3.0691 -6.0367 -0.7836 32 1 0.5353 -9.1293 -2.5852 33 1 2.8964 -8.1898 1.6300 34 1 1.6108 -10.0663 -0.4082 35 1 1.0289 -9.7508 1.2447 36 1 2.3547 -11.8627 1.1097 37 1 3.1221 -10.6624 2.1771 38 1 5.0772 -9.4716 1.3631 39 1 5.6748 -9.8405 -0.2727 40 1 3.6589 -8.8189 -1.2609 41 1 4.4720 -7.6526 -0.1891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:30 Heat of formation + Delta-G solvation = -159.798524 kcal Electronic energy + Delta-G solvation = -21389.316923 eV Core-core repulsion = 18075.227808 eV Total energy + Delta-G solvation = -3314.089115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.99397 -39.21025 -36.98122 -36.03848 -34.53173 -32.96739 -31.32345 -30.98144 -28.05093 -25.61705 -24.21530 -23.75520 -22.51355 -21.50611 -20.26264 -19.81141 -18.21570 -17.19302 -16.62669 -16.18282 -16.15690 -15.90685 -14.95667 -14.92369 -14.64323 -14.35129 -14.14933 -13.81393 -13.48509 -13.27553 -12.52670 -12.30329 -12.21805 -11.79806 -11.74789 -11.56733 -11.51242 -11.11730 -10.88889 -10.80052 -10.62571 -10.60712 -10.52923 -10.38165 -9.75895 -9.71099 -9.34182 -9.05027 -8.54140 -8.32753 -5.98072 -4.00068 2.06690 2.89823 3.33723 3.39603 3.43365 3.67059 4.00804 4.44926 4.48152 4.51054 4.71003 4.83215 4.96255 5.03657 5.15648 5.18151 5.34774 5.37849 5.46009 5.47339 5.57431 5.70344 5.71991 5.84050 5.86331 5.94407 6.23915 6.27276 6.35574 6.61618 6.70209 6.98030 7.09221 7.13819 7.38613 7.69554 7.74810 7.84246 8.02150 8.45196 9.06946 9.63805 11.13468 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.003338 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.186793 B = 8387.026042 C = 8759.640618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.052 3.948 12 N -0.658 5.658 13 C 0.100 3.900 14 H 0.116 0.884 15 C 0.450 3.550 16 O -0.512 6.512 17 O -0.512 6.512 18 C -0.071 4.071 19 C -0.167 4.167 20 C 0.063 3.937 21 O -0.386 6.386 22 C 0.063 3.937 23 C -0.155 4.155 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.351 0.649 32 H 0.400 0.600 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -23.309 1.318 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.076 4.076 12 N -0.290 5.290 13 C -0.013 4.013 14 H 0.134 0.866 15 C 0.291 3.709 16 O -0.399 6.399 17 O -0.323 6.323 18 C -0.090 4.090 19 C -0.205 4.205 20 C -0.014 4.014 21 O -0.305 6.305 22 C -0.013 4.013 23 C -0.193 4.193 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.259 0.741 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.355 -23.025 2.050 23.523 hybrid contribution -0.275 1.185 -1.506 1.936 sum 4.080 -21.840 0.544 22.225 Atomic orbital electron populations 1.69973 1.06070 1.26546 1.51050 1.25033 0.94860 0.99286 0.95383 0.86583 0.79852 0.83425 0.78079 1.20704 1.21247 1.19836 1.21248 0.93070 0.91018 1.50324 0.92635 1.19060 0.93996 0.91326 0.97139 1.21605 0.99249 0.92611 1.00870 1.22301 0.94294 0.90759 1.00235 1.61030 1.18983 0.99508 1.49452 1.21676 0.99200 0.92155 0.88281 0.86639 1.25150 0.73538 0.77894 0.94367 1.90753 1.50830 1.51441 1.46869 1.84675 1.70928 1.40532 1.36144 1.21151 0.94267 0.92845 1.00744 1.22584 0.98714 0.94393 1.04821 1.22557 0.85726 0.99421 0.93670 1.87920 1.37459 1.34871 1.70254 1.22553 0.94014 0.84159 1.00602 1.22286 0.97097 1.00270 0.99606 0.93050 0.96781 0.96544 0.92423 0.93421 0.95009 0.91143 0.82771 0.74113 0.88600 0.88399 0.90590 0.88975 0.93269 0.92860 0.88936 0.91863 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 11 C 0.05 0.91 5.38 -3.82 -0.02 0.89 16 12 N -0.66 -9.35 5.65 -107.95 -0.61 -9.96 16 13 C 0.10 1.16 2.38 -68.86 -0.16 1.00 16 14 H 0.12 1.26 7.80 -51.92 -0.40 0.85 16 15 C 0.45 5.58 6.07 36.01 0.22 5.80 16 16 O -0.51 -8.21 16.06 -18.75 -0.30 -8.51 16 17 O -0.51 -4.69 10.30 -39.25 -0.40 -5.10 16 18 C -0.07 -0.68 2.30 -90.44 -0.21 -0.88 16 19 C -0.17 -1.39 5.01 -26.59 -0.13 -1.52 16 20 C 0.06 0.51 6.84 37.20 0.25 0.76 16 21 O -0.39 -3.96 10.77 -35.23 -0.38 -4.34 16 22 C 0.06 0.56 6.84 37.21 0.25 0.82 16 23 C -0.15 -1.51 4.89 -26.59 -0.13 -1.64 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.59 7.62 -51.93 -0.40 0.20 16 30 H 0.07 1.18 8.05 -51.93 -0.42 0.77 16 31 H 0.35 5.22 7.09 -39.29 -0.28 4.94 16 32 H 0.40 2.29 9.10 45.56 0.41 2.71 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.89 5.14 -51.93 -0.27 0.62 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.69 7.11 -51.93 -0.37 0.32 16 41 H 0.09 0.87 7.40 -51.93 -0.38 0.48 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -33.17 328.37 -7.52 -40.70 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.87 Total: 2.40 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.62 Total: -10.46 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.13 Total: -36.61 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.08 Total: -17.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.17 -7.52 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.103 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds