Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48505 * 109.47138 * 275.28186 * 3 2 1 5 5 H 1.48499 * 109.46927 * 35.27977 * 3 2 1 6 6 H 1.48498 * 109.47419 * 155.28043 * 3 2 1 7 7 C 1.38819 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99608 * 338.00817 * 7 2 1 9 9 N 1.36937 * 119.99667 * 158.00967 * 7 2 1 10 10 C 1.46500 * 120.00020 * 321.83540 * 9 7 2 11 11 C 1.53001 * 109.47101 * 270.00313 * 10 9 7 12 12 C 1.50704 * 109.46691 * 180.02562 * 11 10 9 13 13 O 1.20815 * 120.00184 * 359.97438 * 12 11 10 14 14 O 1.34231 * 119.99376 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99866 * 141.84040 * 9 7 2 16 16 C 1.53003 * 109.47524 * 84.56261 * 15 9 7 17 17 C 1.52992 * 109.47472 * 183.38927 * 16 15 9 18 18 C 1.53186 * 109.54425 * 63.84124 * 17 16 15 19 19 C 1.53089 * 109.16425 * 176.84565 * 18 17 16 20 20 O 1.42907 * 109.41557 * 302.39193 * 19 18 17 21 21 C 1.42900 * 114.09899 * 61.15805 * 20 19 18 22 22 C 1.53091 * 109.41443 * 298.84536 * 21 20 19 23 23 H 0.97001 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46867 * 30.00646 * 10 9 7 25 25 H 1.09003 * 109.46569 * 150.00307 * 10 9 7 26 26 H 1.09004 * 109.47069 * 299.99777 * 11 10 9 27 27 H 1.08995 * 109.47166 * 60.00265 * 11 10 9 28 28 H 0.96700 * 116.99595 * 179.97438 * 14 12 11 29 29 H 1.09001 * 109.47646 * 324.56542 * 15 9 7 30 30 H 1.08998 * 109.47540 * 204.56480 * 15 9 7 31 31 H 1.09008 * 109.47000 * 63.38651 * 16 15 9 32 32 H 1.09002 * 109.46981 * 303.39166 * 16 15 9 33 33 H 1.08994 * 109.61895 * 303.61646 * 17 16 15 34 34 H 1.08995 * 109.51667 * 296.75085 * 18 17 16 35 35 H 1.08997 * 109.51781 * 56.93820 * 18 17 16 36 36 H 1.08998 * 109.48360 * 182.40628 * 19 18 17 37 37 H 1.09008 * 109.48026 * 62.37133 * 19 18 17 38 38 H 1.08994 * 109.48057 * 178.86129 * 21 20 19 39 39 H 1.09006 * 109.49098 * 58.82571 * 21 20 19 40 40 H 1.09005 * 109.51751 * 297.70141 * 22 21 20 41 41 H 1.09001 * 109.52349 * 177.51573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3862 2.1108 -1.3942 5 1 1.5080 2.6178 0.8086 6 1 3.5991 1.4105 0.5855 7 6 2.0103 -1.2022 0.0005 8 1 1.5292 -2.1033 0.3512 9 7 3.3049 -1.2455 -0.4435 10 6 3.7118 -0.4365 -1.5951 11 6 3.5137 -1.2427 -2.8803 12 6 3.9328 -0.4106 -4.0648 13 8 4.3469 0.7121 -3.8982 14 8 3.8450 -0.9165 -5.3050 15 6 4.2831 -2.1009 0.2329 16 6 4.1890 -3.5228 -0.3243 17 6 5.1506 -4.4348 0.4400 18 6 4.7193 -4.5196 1.9074 19 6 5.6392 -5.4951 2.6461 20 8 5.5874 -6.7727 2.0079 21 6 6.0246 -6.7636 0.6475 22 6 5.1202 -5.8389 -0.1715 23 1 -0.4850 0.8401 -0.0004 24 1 3.1049 0.4680 -1.6363 25 1 4.7626 -0.1647 -1.4950 26 1 4.1207 -2.1471 -2.8391 27 1 2.4629 -1.5145 -2.9803 28 1 4.1251 -0.3450 -6.0331 29 1 4.0747 -2.1156 1.3027 30 1 5.2864 -1.7100 0.0635 31 1 4.4560 -3.5173 -1.3811 32 1 3.1697 -3.8914 -0.2091 33 1 6.1619 -4.0328 0.3798 34 1 4.7911 -3.5332 2.3656 35 1 3.6904 -4.8748 1.9646 36 1 5.3106 -5.5920 3.6808 37 1 6.6619 -5.1185 2.6231 38 1 5.9735 -7.7742 0.2425 39 1 7.0523 -6.4036 0.5982 40 1 4.0993 -6.2209 -0.1561 41 1 5.4786 -5.7962 -1.2000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -136.324483 kcal Electronic energy + Delta-G solvation = -21676.124430 eV Core-core repulsion = 18363.053226 eV Total energy + Delta-G solvation = -3313.071204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88739 -39.36497 -36.77080 -35.79934 -34.58264 -31.88474 -31.16929 -30.75591 -28.72061 -25.10126 -24.68199 -23.46951 -22.27734 -20.70482 -20.26528 -19.74524 -17.83306 -16.75125 -16.12884 -16.02159 -15.95440 -15.83658 -15.06977 -14.86293 -14.47629 -14.09138 -13.80465 -13.33329 -13.05925 -12.73307 -12.37289 -12.29532 -12.21807 -11.84879 -11.71828 -11.41750 -11.23764 -11.22516 -10.84297 -10.76397 -10.56770 -10.35334 -10.23134 -10.15093 -9.90015 -9.86821 -9.47373 -9.43220 -8.52657 -6.90514 -6.05673 -3.50414 2.57422 3.35113 3.42702 3.48528 3.53681 3.89929 4.49960 4.74971 4.85870 4.96233 5.08744 5.11894 5.24498 5.29055 5.44286 5.51284 5.54653 5.63133 5.66915 5.75109 5.86558 5.90089 5.96121 6.08329 6.12181 6.17600 6.21536 6.34826 6.41195 6.48204 6.53064 6.68034 6.79778 6.84131 6.96919 7.20883 7.98589 8.21546 8.33545 8.91989 9.64951 10.04365 11.08963 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.005589 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.313987 B = 5008.551634 C = 6240.282804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.041 3.959 3 Si 0.873 3.127 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.275 4.275 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.132 4.132 12 C 0.478 3.522 13 O -0.523 6.523 14 O -0.524 6.524 15 C 0.146 3.854 16 C -0.131 4.131 17 C -0.087 4.087 18 C -0.152 4.152 19 C 0.060 3.940 20 O -0.388 6.388 21 C 0.061 3.939 22 C -0.150 4.150 23 H 0.264 0.736 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.400 0.600 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 -9.201 -2.599 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.404 4.404 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.021 3.979 11 C -0.172 4.172 12 C 0.321 3.679 13 O -0.412 6.412 14 O -0.335 6.335 15 C 0.020 3.980 16 C -0.171 4.171 17 C -0.106 4.106 18 C -0.189 4.189 19 C -0.016 4.016 20 O -0.307 6.307 21 C -0.015 4.015 22 C -0.188 4.188 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.257 0.743 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.571 -9.204 -2.069 14.929 hybrid contribution 0.584 1.627 -0.846 1.924 sum 12.155 -7.578 -2.915 14.617 Atomic orbital electron populations 1.69872 1.06023 1.26897 1.50759 1.25482 0.95050 0.97860 0.97684 0.86985 0.80638 0.84653 0.77431 1.20859 1.22875 1.19316 1.18719 0.86184 0.94357 1.41113 0.90168 1.44126 1.08273 1.50833 1.28943 1.21079 0.98555 0.93711 0.84519 1.22370 1.04910 0.99706 0.90229 1.24222 0.73423 0.86399 0.83903 1.90678 1.43464 1.20841 1.86208 1.84626 1.80406 1.50790 1.17691 1.21004 0.91477 0.89180 0.96333 1.22236 0.99172 0.96982 0.98673 1.21178 0.99793 0.94757 0.94881 1.22290 1.00612 1.00168 0.95865 1.22620 0.98567 0.83833 0.96614 1.87898 1.87311 1.30343 1.25108 1.22560 0.96533 1.00149 0.82295 1.22251 1.01227 0.95935 0.99415 0.92596 0.91923 0.93387 0.88552 0.87054 0.74292 0.92527 0.94530 0.92866 0.91440 0.91722 0.90257 0.90813 0.89183 0.93581 0.89383 0.93601 0.90999 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.97 55.49 0.78 -25.89 16 2 C 0.04 1.14 5.31 -17.43 -0.09 1.05 16 3 Si 0.87 22.36 25.05 -169.99 -4.26 18.10 16 4 H -0.28 -7.28 6.67 56.52 0.38 -6.91 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.28 -7.29 9.91 -15.06 -0.15 -7.44 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 9 N -0.60 -13.38 2.08 -173.24 -0.36 -13.74 16 10 C 0.15 3.16 3.83 -4.04 -0.02 3.15 16 11 C -0.13 -2.38 6.14 -27.88 -0.17 -2.55 16 12 C 0.48 8.29 8.33 36.01 0.30 8.59 16 13 O -0.52 -10.65 16.74 -18.74 -0.31 -10.96 16 14 O -0.52 -7.15 13.42 -39.26 -0.53 -7.67 16 15 C 0.15 2.65 5.53 -4.04 -0.02 2.63 16 16 C -0.13 -2.03 5.00 -26.73 -0.13 -2.17 16 17 C -0.09 -1.11 2.29 -90.44 -0.21 -1.32 16 18 C -0.15 -1.94 5.07 -26.59 -0.13 -2.07 16 19 C 0.06 0.69 6.84 37.20 0.25 0.94 16 20 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 21 C 0.06 0.66 6.84 37.20 0.25 0.91 16 22 C -0.15 -1.73 5.42 -26.59 -0.14 -1.88 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.06 1.53 3.28 -51.93 -0.17 1.36 16 25 H 0.05 0.97 7.81 -51.93 -0.41 0.56 16 26 H 0.10 1.52 6.74 -51.93 -0.35 1.17 16 27 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 28 H 0.40 3.57 9.10 45.56 0.41 3.98 16 29 H 0.06 1.05 6.39 -51.93 -0.33 0.72 16 30 H 0.04 0.61 7.83 -51.93 -0.41 0.21 16 31 H 0.05 0.80 6.74 -51.92 -0.35 0.45 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.02 6.63 -51.93 -0.34 0.67 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -31.89 325.75 -6.17 -38.06 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.75 Total: 2.75 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.26 Total: -0.15 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.42 Total: -39.63 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.22 Total: -24.03 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.26 Total: 18.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.89 -6.17 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.266 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds