Wall clock time and date at job start Mon Mar 30 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48505 * 109.47138 * 275.28186 * 3 2 1 5 5 H 1.48499 * 109.46927 * 35.27977 * 3 2 1 6 6 H 1.48498 * 109.47419 * 155.28043 * 3 2 1 7 7 C 1.38819 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99608 * 338.00817 * 7 2 1 9 9 N 1.36937 * 119.99667 * 158.00967 * 7 2 1 10 10 C 1.46500 * 120.00020 * 321.83540 * 9 7 2 11 11 C 1.53001 * 109.47101 * 270.00313 * 10 9 7 12 12 C 1.50704 * 109.46691 * 180.02562 * 11 10 9 13 13 O 1.20815 * 120.00184 * 359.97438 * 12 11 10 14 14 O 1.34231 * 119.99376 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99866 * 141.84040 * 9 7 2 16 16 C 1.53003 * 109.47524 * 84.56261 * 15 9 7 17 17 C 1.52992 * 109.47472 * 183.38927 * 16 15 9 18 18 C 1.53186 * 109.54425 * 63.84124 * 17 16 15 19 19 C 1.53089 * 109.16425 * 176.84565 * 18 17 16 20 20 O 1.42907 * 109.41557 * 302.39193 * 19 18 17 21 21 C 1.42900 * 114.09899 * 61.15805 * 20 19 18 22 22 C 1.53091 * 109.41443 * 298.84536 * 21 20 19 23 23 H 0.97001 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46867 * 30.00646 * 10 9 7 25 25 H 1.09003 * 109.46569 * 150.00307 * 10 9 7 26 26 H 1.09004 * 109.47069 * 299.99777 * 11 10 9 27 27 H 1.08995 * 109.47166 * 60.00265 * 11 10 9 28 28 H 0.96700 * 116.99595 * 179.97438 * 14 12 11 29 29 H 1.09001 * 109.47646 * 324.56542 * 15 9 7 30 30 H 1.08998 * 109.47540 * 204.56480 * 15 9 7 31 31 H 1.09008 * 109.47000 * 63.38651 * 16 15 9 32 32 H 1.09002 * 109.46981 * 303.39166 * 16 15 9 33 33 H 1.08994 * 109.61895 * 303.61646 * 17 16 15 34 34 H 1.08995 * 109.51667 * 296.75085 * 18 17 16 35 35 H 1.08997 * 109.51781 * 56.93820 * 18 17 16 36 36 H 1.08998 * 109.48360 * 182.40628 * 19 18 17 37 37 H 1.09008 * 109.48026 * 62.37133 * 19 18 17 38 38 H 1.08994 * 109.48057 * 178.86129 * 21 20 19 39 39 H 1.09006 * 109.49098 * 58.82571 * 21 20 19 40 40 H 1.09005 * 109.51751 * 297.70141 * 22 21 20 41 41 H 1.09001 * 109.52349 * 177.51573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3862 2.1108 -1.3942 5 1 1.5080 2.6178 0.8086 6 1 3.5991 1.4105 0.5855 7 6 2.0103 -1.2022 0.0005 8 1 1.5292 -2.1033 0.3512 9 7 3.3049 -1.2455 -0.4435 10 6 3.7118 -0.4365 -1.5951 11 6 3.5137 -1.2427 -2.8803 12 6 3.9328 -0.4106 -4.0648 13 8 4.3469 0.7121 -3.8982 14 8 3.8450 -0.9165 -5.3050 15 6 4.2831 -2.1009 0.2329 16 6 4.1890 -3.5228 -0.3243 17 6 5.1506 -4.4348 0.4400 18 6 4.7193 -4.5196 1.9074 19 6 5.6392 -5.4951 2.6461 20 8 5.5874 -6.7727 2.0079 21 6 6.0246 -6.7636 0.6475 22 6 5.1202 -5.8389 -0.1715 23 1 -0.4850 0.8401 -0.0004 24 1 3.1049 0.4680 -1.6363 25 1 4.7626 -0.1647 -1.4950 26 1 4.1207 -2.1471 -2.8391 27 1 2.4629 -1.5145 -2.9803 28 1 4.1251 -0.3450 -6.0331 29 1 4.0747 -2.1156 1.3027 30 1 5.2864 -1.7100 0.0635 31 1 4.4560 -3.5173 -1.3811 32 1 3.1697 -3.8914 -0.2091 33 1 6.1619 -4.0328 0.3798 34 1 4.7911 -3.5332 2.3656 35 1 3.6904 -4.8748 1.9646 36 1 5.3106 -5.5920 3.6808 37 1 6.6619 -5.1185 2.6231 38 1 5.9735 -7.7742 0.2425 39 1 7.0523 -6.4036 0.5982 40 1 4.0993 -6.2209 -0.1561 41 1 5.4786 -5.7962 -1.2000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:09 Heat of formation + Delta-G solvation = -158.041434 kcal Electronic energy + Delta-G solvation = -21677.066148 eV Core-core repulsion = 18363.053226 eV Total energy + Delta-G solvation = -3314.012922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25151 -40.33528 -38.33835 -37.08843 -35.83568 -33.90592 -32.40256 -31.89620 -30.17278 -26.76103 -26.12473 -24.42815 -23.63090 -22.00909 -21.89431 -20.78504 -19.24589 -18.52563 -17.70676 -17.37953 -17.02226 -16.85888 -16.68978 -15.95572 -15.71082 -15.45311 -15.21066 -14.74043 -14.56418 -14.33463 -13.81310 -13.76414 -13.52951 -13.29706 -13.00712 -12.72017 -12.62808 -12.54737 -12.49819 -12.16612 -11.92958 -11.84918 -11.65068 -11.55916 -11.46700 -11.12910 -11.00948 -10.65662 -10.34712 -8.76886 -8.22581 -5.61613 1.20690 1.31829 1.38980 1.48172 2.13628 2.39507 3.04663 3.06603 3.38058 3.85810 3.90350 4.04353 4.06999 4.11004 4.17401 4.36291 4.47004 4.48437 4.58087 4.63522 4.66651 4.79984 4.83603 4.87926 4.88450 4.94910 5.04272 5.07718 5.12384 5.20442 5.28451 5.38362 5.52749 5.60276 5.65987 5.93795 6.20288 6.34726 6.95492 7.03105 7.61529 8.03809 8.96474 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.005589 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.313987 B = 5008.551634 C = 6240.282804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.010 4.010 3 Si 0.929 3.071 4 H -0.288 1.288 5 H -0.308 1.308 6 H -0.259 1.259 7 C -0.249 4.249 8 H 0.050 0.950 9 N -0.611 5.611 10 C 0.145 3.855 11 C -0.125 4.125 12 C 0.489 3.511 13 O -0.556 6.556 14 O -0.510 6.510 15 C 0.142 3.858 16 C -0.117 4.117 17 C -0.082 4.082 18 C -0.152 4.152 19 C 0.062 3.938 20 O -0.408 6.408 21 C 0.059 3.941 22 C -0.147 4.147 23 H 0.262 0.738 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.425 0.575 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.655 -10.038 -3.579 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.208 4.208 3 Si 0.760 3.240 4 H -0.216 1.216 5 H -0.237 1.237 6 H -0.183 1.183 7 C -0.379 4.379 8 H 0.068 0.932 9 N -0.333 5.333 10 C 0.019 3.981 11 C -0.165 4.165 12 C 0.333 3.667 13 O -0.447 6.447 14 O -0.323 6.323 15 C 0.017 3.983 16 C -0.157 4.157 17 C -0.101 4.101 18 C -0.190 4.190 19 C -0.014 4.014 20 O -0.328 6.328 21 C -0.017 4.017 22 C -0.185 4.185 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.114 0.886 28 H 0.286 0.714 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.452 -10.068 -3.081 17.881 hybrid contribution -0.261 1.782 -0.621 1.905 sum 14.191 -8.286 -3.702 16.845 Atomic orbital electron populations 1.69972 1.07387 1.27248 1.53965 1.25966 0.95457 1.00425 0.98910 0.86074 0.79730 0.81519 0.76716 1.21585 1.23675 1.18293 1.18590 0.87776 0.92856 1.38681 0.93209 1.44218 1.07473 1.51543 1.30083 1.21008 0.98646 0.92819 0.85652 1.22080 1.04608 1.00260 0.89517 1.23811 0.72643 0.85446 0.84775 1.90681 1.45150 1.22040 1.86871 1.84539 1.79734 1.50897 1.17150 1.21186 0.91463 0.89901 0.95702 1.22029 0.98384 0.95682 0.99603 1.21140 0.99669 0.95041 0.94247 1.22266 0.99800 1.00416 0.96480 1.22662 0.99048 0.83041 0.96681 1.87880 1.87625 1.30984 1.26267 1.22714 0.96972 1.00916 0.81136 1.22220 1.00702 0.95087 1.00499 0.92877 0.95086 0.91707 0.85667 0.88578 0.71409 0.93434 0.92022 0.91777 0.94446 0.89857 0.90554 0.93152 0.88450 0.91808 0.87905 0.91896 0.92725 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.97 21.65 0.30 -57.63 16 2 C -0.01 -0.60 5.31 84.86 0.45 -0.15 16 3 Si 0.93 47.14 25.05 68.60 1.72 48.86 16 4 H -0.29 -14.78 6.67 99.48 0.66 -14.12 16 5 H -0.31 -15.78 7.11 99.48 0.71 -15.08 16 6 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.25 -13.43 9.91 84.04 0.83 -12.60 16 8 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 9 N -0.61 -26.76 2.08 -702.00 -1.46 -28.21 16 10 C 0.14 5.97 3.83 86.38 0.33 6.30 16 11 C -0.12 -4.26 6.14 29.85 0.18 -4.08 16 12 C 0.49 15.78 8.33 71.24 0.59 16.38 16 13 O -0.56 -21.56 16.74 22.00 0.37 -21.19 16 14 O -0.51 -12.22 13.42 -51.43 -0.69 -12.91 16 15 C 0.14 4.92 5.53 86.38 0.48 5.40 16 16 C -0.12 -3.46 5.00 30.59 0.15 -3.31 16 17 C -0.08 -1.90 2.29 -10.67 -0.02 -1.93 16 18 C -0.15 -3.72 5.07 30.69 0.16 -3.57 16 19 C 0.06 1.30 6.84 72.01 0.49 1.79 16 20 O -0.41 -9.73 10.77 -148.98 -1.60 -11.33 16 21 C 0.06 1.09 6.84 72.01 0.49 1.59 16 22 C -0.15 -3.04 5.42 30.68 0.17 -2.87 16 23 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 24 H 0.03 1.50 3.28 -2.39 -0.01 1.49 16 25 H 0.06 2.45 7.81 -2.39 -0.02 2.43 16 26 H 0.13 3.52 6.74 -2.39 -0.02 3.51 16 27 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.42 6.03 9.10 -74.06 -0.67 5.36 16 29 H 0.05 1.73 6.39 -2.39 -0.02 1.72 16 30 H 0.06 1.86 7.83 -2.39 -0.02 1.84 16 31 H 0.06 1.74 6.74 -2.38 -0.02 1.73 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.89 6.63 -2.39 -0.02 1.87 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.90 325.75 3.25 -66.66 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.31 Total: 12.81 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.30 Total: 2.95 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.16 Total: -85.85 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.93 Total: -45.43 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.72 Total: 48.86 kcal Total: -69.90 3.25 -66.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.386 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds