Wall clock time and date at job start Mon Mar 30 2020 01:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.53004 * 109.46941 * 119.99688 * 2 1 3 5 5 C 1.52999 * 109.47231 * 300.00523 * 4 2 1 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 2 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47538 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.46864 * 119.99931 * 15 13 11 18 18 H 1.48499 * 109.47368 * 239.99818 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 C 1.50698 * 109.47300 * 240.00035 * 2 1 3 21 21 O 1.20823 * 120.00090 * 239.99826 * 20 2 1 22 22 O 1.34227 * 119.99960 * 60.00198 * 20 2 1 23 23 H 1.08997 * 109.47621 * 299.99680 * 1 2 3 24 24 H 1.09002 * 109.47250 * 60.00397 * 1 2 3 25 25 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47529 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47346 * 299.99776 * 3 2 1 28 28 H 1.09004 * 109.47323 * 59.99586 * 3 2 1 29 29 H 1.09001 * 109.46812 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46710 * 60.00364 * 4 2 1 31 31 H 1.08997 * 109.47422 * 59.99616 * 5 4 2 32 32 H 1.08999 * 109.46632 * 299.99620 * 5 4 2 33 33 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 34 34 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 35 35 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 36 36 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 37 37 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 38 38 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 39 39 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 40 40 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 41 41 H 0.96697 * 117.00294 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 0.0000 2.4985 6 7 2.0200 -0.6922 3.6979 7 6 3.4650 -0.4182 3.9188 8 6 3.6922 -0.7223 5.4152 9 6 2.3068 -0.5613 6.0742 10 8 2.3434 0.4722 7.0605 11 6 1.8688 -1.8621 6.6964 12 1 0.9710 -2.3515 6.3489 13 6 2.6142 -2.4272 7.7094 14 7 3.7071 -1.8308 8.1329 15 14 2.0708 -4.0392 8.4811 16 1 0.8180 -4.5017 7.8314 17 1 3.1320 -5.0608 8.2924 18 1 1.8307 -3.8371 9.9325 19 6 1.3570 -0.1717 4.9213 20 6 2.0324 -0.7104 -1.2304 21 8 2.7270 -1.6927 -1.1196 22 8 1.7082 -0.2518 -2.4496 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7488 1.2493 31 1 0.4399 0.0000 2.4985 32 1 1.8932 1.0277 2.4985 33 1 3.6905 0.6266 3.7047 34 1 4.0771 -1.0745 3.3003 35 1 4.3997 -0.0118 5.8428 36 1 4.0562 -1.7417 5.5433 37 1 2.9579 0.3007 7.7872 38 1 4.2316 -2.2286 8.8454 39 1 0.3831 -0.6425 5.0554 40 1 1.2518 0.9118 4.8650 41 1 2.0536 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603598735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:52 Heat of formation + Delta-G solvation = -149.106238 kcal Electronic energy + Delta-G solvation = -21839.414470 eV Core-core repulsion = 18525.789007 eV Total energy + Delta-G solvation = -3313.625463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72123 -38.51079 -36.81898 -36.12737 -34.53224 -32.05445 -30.54361 -28.15117 -27.59295 -27.21921 -25.04878 -24.27913 -22.46742 -20.34727 -19.52776 -18.93826 -17.99828 -16.97793 -16.67160 -15.88257 -15.33927 -14.89720 -14.70629 -14.35670 -14.05351 -13.76862 -13.62735 -13.31083 -12.79551 -12.55325 -12.21508 -12.09052 -11.92289 -11.77600 -11.70655 -11.42063 -11.22200 -11.07434 -10.92290 -10.83800 -10.59451 -10.42188 -10.39583 -10.28354 -10.18398 -9.86599 -8.99123 -8.52627 -8.08047 -7.77768 -6.12204 -4.17345 2.09273 2.85088 3.28235 3.36520 3.41968 4.33497 4.39760 4.64546 4.71060 4.77091 5.15319 5.19832 5.27256 5.42071 5.49025 5.61907 5.64625 5.66358 5.76366 5.86390 5.91044 5.99761 6.01690 6.13081 6.23555 6.31129 6.31604 6.35492 6.50546 6.56489 6.91121 7.10793 7.26784 7.60613 7.71136 7.75690 7.76649 7.90787 8.26731 8.85445 9.46828 9.55622 10.95404 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.004139 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.768646 B = 6763.648160 C = 7056.863676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.094 4.094 5 C 0.044 3.956 6 N -0.501 5.501 7 C 0.032 3.968 8 C -0.121 4.121 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.517 4.517 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.054 3.946 20 C 0.486 3.514 21 O -0.509 6.509 22 O -0.517 6.517 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.382 0.618 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 5.764 -16.695 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.052 4.052 3 C -0.201 4.201 4 C -0.132 4.132 5 C -0.085 4.085 6 N -0.225 5.225 7 C -0.096 4.096 8 C -0.159 4.159 9 C 0.208 3.792 10 O -0.404 6.404 11 C -0.555 4.555 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.542 5.542 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.073 4.073 20 C 0.328 3.672 21 O -0.396 6.396 22 O -0.328 6.328 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.232 0.768 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.793 5.385 -16.670 17.924 hybrid contribution 0.744 -0.708 0.311 1.074 sum -3.048 4.677 -16.359 17.285 Atomic orbital electron populations 1.21930 0.91552 1.03137 1.03441 1.20537 0.98038 0.96684 0.89971 1.21940 1.01594 0.93114 1.03488 1.21455 1.01567 0.99947 0.90238 1.22356 1.00116 0.95197 0.90794 1.65274 1.03888 1.52053 1.01268 1.23206 0.89537 0.97480 0.99345 1.22848 0.99844 1.02075 0.91178 1.19266 0.89239 0.85995 0.84688 1.86078 1.68379 1.47629 1.38346 1.21689 1.09918 1.05883 1.18007 0.91935 1.25006 0.94491 0.97644 0.96456 1.69708 1.15538 1.39880 1.29040 0.86427 0.78773 0.83259 0.78866 1.19680 1.21005 1.21043 1.22968 0.98652 0.96137 0.89584 1.23583 0.76765 0.82289 0.84589 1.90737 1.35624 1.26099 1.87177 1.84537 1.72402 1.59033 1.16869 0.90392 0.91498 0.91850 0.92089 0.91428 0.90444 0.91058 0.90106 0.90888 0.94749 0.95419 0.91580 0.93174 0.90657 0.76756 0.92580 0.90558 0.95209 0.73563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.05 37.16 0.30 -1.04 16 2 C -0.05 -0.55 0.74 -155.66 -0.11 -0.67 16 3 C -0.14 -1.36 8.05 37.16 0.30 -1.06 16 4 C -0.09 -1.31 3.67 -26.73 -0.10 -1.40 16 5 C 0.04 0.66 4.13 -3.82 -0.02 0.64 16 6 N -0.50 -9.78 5.34 -229.83 -1.23 -11.00 16 7 C 0.03 0.64 5.93 -2.09 -0.01 0.62 16 8 C -0.12 -2.85 5.55 -25.35 -0.14 -2.99 16 9 C 0.25 6.24 1.05 -90.39 -0.10 6.15 16 10 O -0.60 -15.62 12.94 -35.23 -0.46 -16.08 16 11 C -0.52 -14.12 8.10 -34.44 -0.28 -14.40 16 12 H 0.06 1.73 7.53 -52.49 -0.40 1.33 16 13 C 0.06 1.75 5.02 -17.82 -0.09 1.66 16 14 N -0.90 -24.46 10.81 55.43 0.60 -23.87 16 15 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.05 1.18 5.74 -2.18 -0.01 1.17 16 20 C 0.49 5.70 6.92 36.00 0.25 5.95 16 21 O -0.51 -7.77 16.74 -18.75 -0.31 -8.08 16 22 O -0.52 -4.41 13.23 -39.25 -0.52 -4.93 16 23 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 24 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.08 0.71 6.43 -51.93 -0.33 0.37 16 29 H 0.07 1.07 7.43 -51.93 -0.39 0.69 16 30 H 0.08 1.25 8.10 -51.93 -0.42 0.82 16 31 H 0.07 1.01 6.37 -51.93 -0.33 0.68 16 32 H 0.03 0.49 6.06 -51.93 -0.31 0.17 16 33 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 34 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 35 H 0.05 1.19 7.98 -51.93 -0.41 0.77 16 36 H 0.07 1.96 7.23 -51.93 -0.38 1.58 16 37 H 0.38 10.15 7.32 45.56 0.33 10.48 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.08 1.67 7.67 -51.93 -0.40 1.27 16 40 H 0.03 0.62 7.94 -51.93 -0.41 0.21 16 41 H 0.41 1.82 9.10 45.56 0.41 2.23 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -30.69 324.89 -7.05 -37.74 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.00 Total: 10.51 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.01 Total: -5.37 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.63 Total: -34.87 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.29 Total: -29.09 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.69 -7.05 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603598735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.368 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds