Wall clock time and date at job start Mon Mar 30 2020 01:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.53004 * 109.46941 * 119.99688 * 2 1 3 5 5 C 1.52999 * 109.47231 * 300.00523 * 4 2 1 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 2 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47538 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.46864 * 119.99931 * 15 13 11 18 18 H 1.48499 * 109.47368 * 239.99818 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 C 1.50698 * 109.47300 * 240.00035 * 2 1 3 21 21 O 1.20823 * 120.00090 * 239.99826 * 20 2 1 22 22 O 1.34227 * 119.99960 * 60.00198 * 20 2 1 23 23 H 1.08997 * 109.47621 * 299.99680 * 1 2 3 24 24 H 1.09002 * 109.47250 * 60.00397 * 1 2 3 25 25 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47529 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47346 * 299.99776 * 3 2 1 28 28 H 1.09004 * 109.47323 * 59.99586 * 3 2 1 29 29 H 1.09001 * 109.46812 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46710 * 60.00364 * 4 2 1 31 31 H 1.08997 * 109.47422 * 59.99616 * 5 4 2 32 32 H 1.08999 * 109.46632 * 299.99620 * 5 4 2 33 33 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 34 34 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 35 35 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 36 36 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 37 37 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 38 38 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 39 39 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 40 40 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 41 41 H 0.96697 * 117.00294 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 0.0000 2.4985 6 7 2.0200 -0.6922 3.6979 7 6 3.4650 -0.4182 3.9188 8 6 3.6922 -0.7223 5.4152 9 6 2.3068 -0.5613 6.0742 10 8 2.3434 0.4722 7.0605 11 6 1.8688 -1.8621 6.6964 12 1 0.9710 -2.3515 6.3489 13 6 2.6142 -2.4272 7.7094 14 7 3.7071 -1.8308 8.1329 15 14 2.0708 -4.0392 8.4811 16 1 0.8180 -4.5017 7.8314 17 1 3.1320 -5.0608 8.2924 18 1 1.8307 -3.8371 9.9325 19 6 1.3570 -0.1717 4.9213 20 6 2.0324 -0.7104 -1.2304 21 8 2.7270 -1.6927 -1.1196 22 8 1.7082 -0.2518 -2.4496 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7488 1.2493 31 1 0.4399 0.0000 2.4985 32 1 1.8932 1.0277 2.4985 33 1 3.6905 0.6266 3.7047 34 1 4.0771 -1.0745 3.3003 35 1 4.3997 -0.0118 5.8428 36 1 4.0562 -1.7417 5.5433 37 1 2.9579 0.3007 7.7872 38 1 4.2316 -2.2286 8.8454 39 1 0.3831 -0.6425 5.0554 40 1 1.2518 0.9118 4.8650 41 1 2.0536 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603598735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:51 Heat of formation + Delta-G solvation = -172.752375 kcal Electronic energy + Delta-G solvation = -21840.439844 eV Core-core repulsion = 18525.789007 eV Total energy + Delta-G solvation = -3314.650836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63257 -40.11551 -37.96264 -37.05824 -36.18278 -34.13923 -32.05862 -29.84582 -28.79039 -28.30950 -26.40682 -25.73026 -23.72327 -21.83827 -21.31996 -20.03089 -19.01631 -18.86425 -17.71945 -16.91061 -16.77184 -16.66773 -16.20989 -15.81153 -15.54793 -15.13435 -14.61760 -14.47604 -14.13359 -13.99396 -13.67054 -13.48923 -13.23273 -13.13947 -12.88839 -12.76544 -12.55274 -12.47436 -12.40885 -12.26320 -12.09918 -12.02402 -11.85768 -11.79946 -11.49986 -11.29708 -10.91569 -10.58738 -10.10563 -9.29054 -8.17975 -6.30215 1.19976 1.39884 1.43030 1.53990 2.06066 2.41838 2.97704 3.16095 3.69770 3.78442 3.88641 3.98551 4.09046 4.29024 4.33424 4.37977 4.42673 4.53798 4.63293 4.67590 4.78365 4.84140 4.87790 4.89378 4.97713 5.02210 5.08495 5.18453 5.27348 5.33267 5.37286 5.40631 5.60967 5.67518 5.79742 6.00512 6.20305 6.31877 6.74951 6.99863 7.37944 7.45910 8.88089 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.004139 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.768646 B = 6763.648160 C = 7056.863676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.086 4.086 5 C 0.046 3.954 6 N -0.514 5.514 7 C 0.042 3.958 8 C -0.114 4.114 9 C 0.230 3.770 10 O -0.601 6.601 11 C -0.540 4.540 12 H 0.051 0.949 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 0.957 3.043 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.278 1.278 19 C 0.064 3.936 20 C 0.492 3.508 21 O -0.553 6.553 22 O -0.504 6.504 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.376 0.624 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 6.576 -18.189 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 C -0.198 4.198 4 C -0.124 4.124 5 C -0.081 4.081 6 N -0.239 5.239 7 C -0.085 4.085 8 C -0.153 4.153 9 C 0.190 3.810 10 O -0.409 6.409 11 C -0.579 4.579 12 H 0.070 0.930 13 C -0.175 4.175 14 N -0.557 5.557 15 Si 0.783 3.217 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.204 1.204 19 C -0.064 4.064 20 C 0.335 3.665 21 O -0.443 6.443 22 O -0.318 6.318 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.226 0.774 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.702 6.217 -18.203 19.802 hybrid contribution 1.024 -0.947 0.717 1.568 sum -3.678 5.270 -17.487 18.630 Atomic orbital electron populations 1.21942 0.90021 1.03132 1.04716 1.20492 0.99136 0.97099 0.88310 1.21946 1.01300 0.91888 1.04698 1.21305 1.00547 0.99165 0.91423 1.22445 1.01052 0.95644 0.88985 1.65224 1.03414 1.53344 1.01913 1.23084 0.90139 0.98759 0.96548 1.22637 0.98795 0.99862 0.93958 1.19541 0.90855 0.85258 0.85325 1.86069 1.68286 1.48062 1.38512 1.21911 1.09871 1.07180 1.18902 0.93041 1.25662 0.94559 1.00408 0.96821 1.69783 1.15934 1.40809 1.29132 0.85531 0.78254 0.79797 0.78140 1.19694 1.20717 1.20388 1.22781 0.97684 0.96592 0.89348 1.23678 0.75753 0.81440 0.85596 1.90732 1.37707 1.28030 1.87863 1.84480 1.71837 1.58809 1.16625 0.89661 0.89691 0.92530 0.92622 0.89637 0.89829 0.92567 0.92178 0.89326 0.93074 0.93505 0.90799 0.94027 0.93787 0.77427 0.92388 0.91071 0.94256 0.71308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.05 71.98 0.58 -1.66 16 2 C -0.05 -0.96 0.74 -52.93 -0.04 -1.00 16 3 C -0.14 -2.23 8.05 71.98 0.58 -1.66 16 4 C -0.09 -2.29 3.67 30.60 0.11 -2.18 16 5 C 0.05 1.30 4.13 86.30 0.36 1.65 16 6 N -0.51 -19.57 5.34 -881.04 -4.70 -24.27 16 7 C 0.04 1.65 5.93 86.42 0.51 2.16 16 8 C -0.11 -5.44 5.55 31.49 0.17 -5.26 16 9 C 0.23 11.66 1.05 -10.65 -0.01 11.65 16 10 O -0.60 -31.82 12.94 -148.98 -1.93 -33.75 16 11 C -0.54 -29.95 8.10 25.60 0.21 -29.74 16 12 H 0.05 2.89 7.53 -2.91 -0.02 2.87 16 13 C 0.02 1.35 5.02 84.66 0.43 1.78 16 14 N -0.92 -50.32 10.81 21.45 0.23 -50.09 16 15 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.06 2.73 5.74 86.45 0.50 3.23 16 20 C 0.49 10.69 6.92 71.24 0.49 11.19 16 21 O -0.55 -16.57 16.74 21.97 0.37 -16.21 16 22 O -0.50 -7.22 13.23 -51.39 -0.68 -7.90 16 23 H 0.08 1.24 6.43 -2.39 -0.02 1.22 16 24 H 0.08 1.06 8.11 -2.39 -0.02 1.04 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.07 8.11 -2.39 -0.02 1.05 16 28 H 0.08 1.23 6.43 -2.38 -0.02 1.22 16 29 H 0.06 1.65 7.43 -2.39 -0.02 1.63 16 30 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 31 H 0.09 2.22 6.37 -2.39 -0.02 2.20 16 32 H 0.05 1.29 6.06 -2.39 -0.01 1.28 16 33 H 0.05 1.64 7.75 -2.38 -0.02 1.62 16 34 H 0.07 2.75 7.86 -2.39 -0.02 2.73 16 35 H 0.04 2.00 7.98 -2.39 -0.02 1.98 16 36 H 0.04 2.34 7.23 -2.39 -0.02 2.32 16 37 H 0.38 20.39 7.32 -74.06 -0.54 19.85 16 38 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.07 3.08 7.67 -2.39 -0.02 3.07 16 40 H 0.04 1.59 7.94 -2.39 -0.02 1.57 16 41 H 0.43 2.69 9.10 -74.06 -0.67 2.02 16 Total: -1.00 -66.06 324.89 -0.97 -67.03 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.17 Total: 29.26 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 3.89 Total: -9.85 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -4.47 Total: -74.36 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -2.24 Total: -57.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -66.06 -0.97 -67.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603598735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.718 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds