Wall clock time and date at job start Mon Mar 30 2020 01:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46977 * 2 1 4 4 C 1.53002 * 109.46982 * 119.99625 * 2 1 3 5 5 C 1.53004 * 109.47068 * 176.20381 * 4 2 1 6 6 H 1.08998 * 109.46915 * 55.81358 * 5 4 2 7 7 C 1.50698 * 109.46948 * 175.81386 * 5 4 2 8 8 O 1.20826 * 119.99301 * 120.00185 * 7 5 4 9 9 O 1.34227 * 120.00279 * 299.72454 * 7 5 4 10 10 N 1.46893 * 109.46769 * 295.81707 * 5 4 2 11 11 C 1.47904 * 111.00589 * 85.88375 * 10 5 4 12 12 C 1.53993 * 107.05912 * 214.15511 * 11 10 5 13 13 C 1.54594 * 105.13996 * 1.21704 * 12 11 10 14 14 O 1.42893 * 110.72507 * 263.42271 * 13 12 11 15 15 C 1.50705 * 110.72169 * 140.31762 * 13 12 11 16 16 H 1.07998 * 120.00008 * 241.45818 * 15 13 12 17 17 C 1.37878 * 119.99927 * 61.45472 * 15 13 12 18 18 N 1.31515 * 120.00104 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99932 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47416 * 89.99634 * 19 17 15 21 21 H 1.48497 * 109.47031 * 210.00043 * 19 17 15 22 22 H 1.48502 * 109.46798 * 329.99915 * 19 17 15 23 23 C 1.48535 * 111.00385 * 328.48094 * 10 5 4 24 24 H 1.09007 * 109.46948 * 300.00318 * 1 2 3 25 25 H 1.08997 * 109.47218 * 59.99796 * 1 2 3 26 26 H 1.08996 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47471 * 239.99705 * 2 1 3 28 28 H 1.08998 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46942 * 299.99502 * 3 2 1 30 30 H 1.09000 * 109.47198 * 60.00242 * 3 2 1 31 31 H 1.08995 * 109.46934 * 56.20489 * 4 2 1 32 32 H 1.09004 * 109.47272 * 296.20091 * 4 2 1 33 33 H 0.96697 * 117.00121 * 180.27587 * 9 7 5 34 34 H 1.09002 * 109.90976 * 333.50343 * 11 10 5 35 35 H 1.08999 * 109.92163 * 94.59554 * 11 10 5 36 36 H 1.09001 * 110.31075 * 120.13994 * 12 11 10 37 37 H 1.08998 * 110.30669 * 242.20450 * 12 11 10 38 38 H 0.96701 * 114.00053 * 298.54975 * 14 13 12 39 39 H 0.96998 * 119.99953 * 179.97438 * 18 17 15 40 40 H 1.09001 * 110.66438 * 278.15994 * 23 10 5 41 41 H 1.08993 * 110.66458 * 41.29255 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5670 -0.8044 1.2025 6 1 3.9823 0.1974 1.0929 7 6 4.0758 -1.4222 2.4794 8 8 4.7148 -2.4470 2.4419 9 8 3.8238 -0.8310 3.6579 10 7 3.9774 -1.6323 0.0605 11 6 4.0670 -0.8242 -1.1750 12 6 3.6377 -1.7333 -2.3415 13 6 3.2730 -3.0853 -1.6865 14 8 4.3744 -3.9932 -1.7537 15 6 2.0523 -3.6817 -2.3388 16 1 1.1593 -3.8552 -1.7567 17 6 2.0755 -4.0057 -3.6788 18 7 3.1627 -3.7939 -4.3878 19 14 0.5622 -4.7442 -4.4874 20 1 -0.2956 -3.6554 -5.0202 21 1 0.9802 -5.6345 -5.6000 22 1 -0.2011 -5.5300 -3.4848 23 6 2.9723 -2.6895 -0.2191 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6222 -1.7273 1.2840 32 1 1.7333 -0.1695 2.1380 33 1 4.1741 -1.2624 4.4492 34 1 3.3977 0.0335 -1.1070 35 1 5.0920 -0.4843 -1.3229 36 1 2.7700 -1.3126 -2.8495 37 1 4.4612 -1.8615 -3.0440 38 1 4.6498 -4.2116 -2.6546 39 1 3.1791 -4.0223 -5.3304 40 1 3.1148 -3.5413 0.4461 41 1 1.9612 -2.2931 -0.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609691290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:32 Heat of formation + Delta-G solvation = -125.045280 kcal Electronic energy + Delta-G solvation = -23093.525376 eV Core-core repulsion = 19780.943275 eV Total energy + Delta-G solvation = -3312.582101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52705 -38.92029 -36.14206 -35.79967 -33.92384 -32.08046 -31.22767 -28.46300 -27.48798 -26.85714 -25.32329 -24.15292 -21.36809 -19.93093 -19.85140 -19.33487 -17.67578 -17.10233 -16.29522 -15.84453 -15.19112 -15.04181 -14.76739 -14.20231 -13.98253 -13.55162 -13.32200 -13.03927 -12.91731 -12.29754 -12.08020 -11.95727 -11.88917 -11.39703 -11.29191 -11.22652 -11.10091 -10.99275 -10.75872 -10.67309 -10.52953 -10.48623 -10.43481 -10.15386 -9.87674 -9.72285 -9.12070 -8.56993 -8.05396 -7.64266 -6.18848 -4.27093 2.54347 3.15500 3.21860 3.30046 3.33676 4.29829 4.55711 4.87740 4.96957 5.07873 5.10159 5.24403 5.43012 5.51785 5.68430 5.73469 5.81657 5.83806 5.86603 5.91495 5.95758 6.08327 6.11808 6.17868 6.33224 6.43443 6.46356 6.57201 6.66994 6.72725 6.93673 7.05203 7.37464 7.51541 7.54441 7.59053 7.83889 8.21173 8.24068 8.75393 9.41993 9.62440 10.88061 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.006895 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.019625 B = 4059.709982 C = 4660.549935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.151 4.151 4 C -0.142 4.142 5 C 0.084 3.916 6 H 0.109 0.891 7 C 0.476 3.524 8 O -0.486 6.486 9 O -0.526 6.526 10 N -0.492 5.492 11 C 0.018 3.982 12 C -0.127 4.127 13 C 0.259 3.741 14 O -0.578 6.578 15 C -0.536 4.536 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.039 3.961 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.375 0.625 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 10.140 9.132 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.208 4.208 4 C -0.181 4.181 5 C -0.027 4.027 6 H 0.127 0.873 7 C 0.316 3.684 8 O -0.370 6.370 9 O -0.338 6.338 10 N -0.216 5.216 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.218 3.782 14 O -0.385 6.385 15 C -0.574 4.574 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.088 4.088 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.225 0.775 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.008 9.831 9.375 13.732 hybrid contribution -1.202 -0.324 -0.766 1.461 sum -3.209 9.507 8.609 13.221 Atomic orbital electron populations 1.21769 0.94896 1.02056 1.01235 1.21519 0.96310 0.96319 0.99295 1.21971 1.00980 0.96109 1.01697 1.22272 0.94033 1.02479 0.99333 1.21371 0.95065 0.97740 0.88540 0.87295 1.23579 0.77160 0.82828 0.84836 1.90736 1.35925 1.23358 1.86949 1.84532 1.74698 1.57098 1.17489 1.64603 1.45061 1.10090 1.01850 1.23362 1.00513 0.96546 0.90481 1.22923 1.00852 0.97342 0.95502 1.19302 0.85182 0.85549 0.88139 1.86192 1.52399 1.66709 1.33238 1.21592 0.98843 1.42487 0.94522 0.92201 1.24982 0.96336 0.94626 0.97106 1.69737 1.27329 1.47826 1.08396 0.86523 0.82850 0.79176 0.79041 1.20604 1.21076 1.19803 1.23584 0.92928 0.93273 0.98996 0.93209 0.92590 0.92353 0.88190 0.92431 0.92500 0.92742 0.89951 0.90724 0.73902 0.92633 0.91905 0.91923 0.91409 0.77545 0.92396 0.90970 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.12 -1.59 1.79 -90.62 -0.16 -1.75 16 3 C -0.15 -1.73 8.09 37.16 0.30 -1.43 16 4 C -0.14 -1.99 3.59 -26.73 -0.10 -2.08 16 5 C 0.08 1.31 2.34 -68.87 -0.16 1.15 16 6 H 0.11 1.51 6.04 -51.93 -0.31 1.20 16 7 C 0.48 7.68 7.64 36.00 0.28 7.96 16 8 O -0.49 -9.84 17.16 -18.75 -0.32 -10.16 16 9 O -0.53 -6.27 13.26 -39.25 -0.52 -6.79 16 10 N -0.49 -9.64 4.64 -223.89 -1.04 -10.68 16 11 C 0.02 0.33 5.66 -2.75 -0.02 0.31 16 12 C -0.13 -2.86 4.79 -25.38 -0.12 -2.98 16 13 C 0.26 6.41 0.95 -89.91 -0.09 6.33 16 14 O -0.58 -15.73 13.10 -35.23 -0.46 -16.19 16 15 C -0.54 -14.14 8.14 -34.44 -0.28 -14.42 16 16 H 0.06 1.57 7.78 -52.49 -0.41 1.16 16 17 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 18 N -0.89 -23.72 11.00 55.43 0.61 -23.11 16 19 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.04 0.85 4.49 -1.90 -0.01 0.84 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.66 3.82 -51.93 -0.20 1.46 16 28 H 0.06 0.66 5.32 -51.93 -0.28 0.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.27 5.91 -51.93 -0.31 0.96 16 32 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 33 H 0.40 3.09 9.10 45.56 0.41 3.50 16 34 H 0.06 0.89 3.05 -51.93 -0.16 0.74 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.44 7.69 -51.93 -0.40 1.04 16 37 H 0.07 1.62 7.99 -51.93 -0.41 1.21 16 38 H 0.38 10.20 7.46 45.56 0.34 10.54 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.35 4.02 -51.93 -0.21 1.14 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -30.41 313.45 -6.58 -36.99 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -4.44 Total: 15.47 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.11 Total: -5.71 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.43 Total: -33.79 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.30 Total: -33.13 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.41 -6.58 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609691290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.054 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds