Wall clock time and date at job start Mon Mar 30 2020 01:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46977 * 2 1 4 4 C 1.53002 * 109.46982 * 119.99625 * 2 1 3 5 5 C 1.53004 * 109.47068 * 176.20381 * 4 2 1 6 6 H 1.08998 * 109.46915 * 55.81358 * 5 4 2 7 7 C 1.50698 * 109.46948 * 175.81386 * 5 4 2 8 8 O 1.20826 * 119.99301 * 120.00185 * 7 5 4 9 9 O 1.34227 * 120.00279 * 299.72454 * 7 5 4 10 10 N 1.46893 * 109.46769 * 295.81707 * 5 4 2 11 11 C 1.47904 * 111.00589 * 85.88375 * 10 5 4 12 12 C 1.53993 * 107.05912 * 214.15511 * 11 10 5 13 13 C 1.54594 * 105.13996 * 1.21704 * 12 11 10 14 14 O 1.42893 * 110.72507 * 263.42271 * 13 12 11 15 15 C 1.50705 * 110.72169 * 140.31762 * 13 12 11 16 16 H 1.07998 * 120.00008 * 241.45818 * 15 13 12 17 17 C 1.37878 * 119.99927 * 61.45472 * 15 13 12 18 18 N 1.31515 * 120.00104 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99932 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47416 * 89.99634 * 19 17 15 21 21 H 1.48497 * 109.47031 * 210.00043 * 19 17 15 22 22 H 1.48502 * 109.46798 * 329.99915 * 19 17 15 23 23 C 1.48535 * 111.00385 * 328.48094 * 10 5 4 24 24 H 1.09007 * 109.46948 * 300.00318 * 1 2 3 25 25 H 1.08997 * 109.47218 * 59.99796 * 1 2 3 26 26 H 1.08996 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47471 * 239.99705 * 2 1 3 28 28 H 1.08998 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46942 * 299.99502 * 3 2 1 30 30 H 1.09000 * 109.47198 * 60.00242 * 3 2 1 31 31 H 1.08995 * 109.46934 * 56.20489 * 4 2 1 32 32 H 1.09004 * 109.47272 * 296.20091 * 4 2 1 33 33 H 0.96697 * 117.00121 * 180.27587 * 9 7 5 34 34 H 1.09002 * 109.90976 * 333.50343 * 11 10 5 35 35 H 1.08999 * 109.92163 * 94.59554 * 11 10 5 36 36 H 1.09001 * 110.31075 * 120.13994 * 12 11 10 37 37 H 1.08998 * 110.30669 * 242.20450 * 12 11 10 38 38 H 0.96701 * 114.00053 * 298.54975 * 14 13 12 39 39 H 0.96998 * 119.99953 * 179.97438 * 18 17 15 40 40 H 1.09001 * 110.66438 * 278.15994 * 23 10 5 41 41 H 1.08993 * 110.66458 * 41.29255 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5670 -0.8044 1.2025 6 1 3.9823 0.1974 1.0929 7 6 4.0758 -1.4222 2.4794 8 8 4.7148 -2.4470 2.4419 9 8 3.8238 -0.8310 3.6579 10 7 3.9774 -1.6323 0.0605 11 6 4.0670 -0.8242 -1.1750 12 6 3.6377 -1.7333 -2.3415 13 6 3.2730 -3.0853 -1.6865 14 8 4.3744 -3.9932 -1.7537 15 6 2.0523 -3.6817 -2.3388 16 1 1.1593 -3.8552 -1.7567 17 6 2.0755 -4.0057 -3.6788 18 7 3.1627 -3.7939 -4.3878 19 14 0.5622 -4.7442 -4.4874 20 1 -0.2956 -3.6554 -5.0202 21 1 0.9802 -5.6345 -5.6000 22 1 -0.2011 -5.5300 -3.4848 23 6 2.9723 -2.6895 -0.2191 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6222 -1.7273 1.2840 32 1 1.7333 -0.1695 2.1380 33 1 4.1741 -1.2624 4.4492 34 1 3.3977 0.0335 -1.1070 35 1 5.0920 -0.4843 -1.3229 36 1 2.7700 -1.3126 -2.8495 37 1 4.4612 -1.8615 -3.0440 38 1 4.6498 -4.2116 -2.6546 39 1 3.1791 -4.0223 -5.3304 40 1 3.1148 -3.5413 0.4461 41 1 1.9612 -2.2931 -0.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609691290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:32 Heat of formation + Delta-G solvation = -148.785815 kcal Electronic energy + Delta-G solvation = -23094.554843 eV Core-core repulsion = 19780.943275 eV Total energy + Delta-G solvation = -3313.611568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86763 -40.30361 -37.76146 -36.99637 -35.42087 -34.14661 -32.72034 -30.14381 -29.00711 -27.93677 -26.86278 -25.68383 -22.78004 -21.59772 -21.11686 -20.76630 -18.99879 -18.90101 -17.61691 -17.20876 -16.89686 -16.75688 -16.24664 -15.83522 -15.23946 -14.93920 -14.86125 -14.37249 -14.13666 -13.87352 -13.59531 -13.31812 -13.19522 -12.96219 -12.83144 -12.69276 -12.49561 -12.42645 -12.40466 -12.27849 -12.10925 -11.95425 -11.71912 -11.54392 -11.34776 -11.10960 -11.01551 -10.57728 -10.06794 -9.13965 -8.19130 -6.34748 1.29435 1.39764 1.42887 1.51838 2.00704 2.39228 3.05408 3.15092 3.72727 3.86707 3.93232 4.03064 4.11997 4.13002 4.32830 4.39728 4.51346 4.52213 4.72450 4.75940 4.79069 4.89768 4.90763 4.97175 5.05803 5.10164 5.13081 5.26402 5.36475 5.46546 5.51401 5.53670 5.62031 5.67995 5.77841 5.90460 6.10435 6.28354 6.71095 7.12393 7.36935 7.51778 8.86413 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.006895 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.019625 B = 4059.709982 C = 4660.549935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.148 4.148 4 C -0.134 4.134 5 C 0.080 3.920 6 H 0.137 0.863 7 C 0.484 3.516 8 O -0.536 6.536 9 O -0.507 6.507 10 N -0.510 5.510 11 C 0.027 3.973 12 C -0.115 4.115 13 C 0.238 3.762 14 O -0.595 6.595 15 C -0.557 4.557 16 H 0.053 0.947 17 C 0.032 3.968 18 N -0.911 5.911 19 Si 0.956 3.044 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.275 1.275 23 C 0.055 3.945 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.425 0.575 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.041 0.959 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 12.298 10.206 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C -0.205 4.205 4 C -0.172 4.172 5 C -0.031 4.031 6 H 0.154 0.846 7 C 0.326 3.674 8 O -0.425 6.425 9 O -0.320 6.320 10 N -0.235 5.235 11 C -0.099 4.099 12 C -0.154 4.154 13 C 0.199 3.801 14 O -0.402 6.402 15 C -0.596 4.596 16 H 0.072 0.928 17 C -0.169 4.169 18 N -0.550 5.550 19 Si 0.781 3.219 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.072 4.072 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.286 0.714 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.163 12.021 10.487 16.263 hybrid contribution -0.844 -0.975 -1.016 1.642 sum -4.007 11.046 9.471 15.092 Atomic orbital electron populations 1.21754 0.94051 1.01444 1.02532 1.21469 0.97096 0.97481 0.97476 1.21950 1.00984 0.94426 1.03096 1.22204 0.92352 1.01857 1.00829 1.21532 0.96486 0.98025 0.87020 0.84584 1.23599 0.75931 0.81888 0.85956 1.90734 1.38386 1.25579 1.87785 1.84459 1.73997 1.56309 1.17230 1.64439 1.44916 1.10801 1.03320 1.23294 1.01569 0.96428 0.88614 1.22656 0.99442 0.96998 0.96267 1.19634 0.84104 0.86046 0.90348 1.86190 1.53417 1.67723 1.32878 1.21823 0.99286 1.43369 0.95101 0.92833 1.25655 0.98875 0.94862 0.97498 1.69828 1.28626 1.48011 1.08547 0.85597 0.79801 0.78538 0.77916 1.19565 1.20869 1.19951 1.23326 0.94397 0.93275 0.96235 0.90936 0.92280 0.93958 0.91514 0.92319 0.92001 0.90575 0.92005 0.87874 0.71380 0.89486 0.91177 0.92931 0.93731 0.78217 0.92269 0.94047 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.12 -2.90 1.79 -10.79 -0.02 -2.92 16 3 C -0.15 -2.81 8.09 71.98 0.58 -2.23 16 4 C -0.13 -3.41 3.59 30.60 0.11 -3.30 16 5 C 0.08 2.33 2.34 44.17 0.10 2.43 16 6 H 0.14 3.27 6.04 -2.39 -0.01 3.26 16 7 C 0.48 14.77 7.64 71.24 0.54 15.31 16 8 O -0.54 -21.66 17.16 21.96 0.38 -21.28 16 9 O -0.51 -10.40 13.26 -51.39 -0.68 -11.08 16 10 N -0.51 -19.81 4.64 -862.25 -4.00 -23.81 16 11 C 0.03 1.00 5.66 86.45 0.49 1.49 16 12 C -0.11 -5.25 4.79 31.47 0.15 -5.10 16 13 C 0.24 12.19 0.95 -10.33 -0.01 12.18 16 14 O -0.59 -33.72 13.10 -148.98 -1.95 -35.67 16 15 C -0.56 -30.15 8.14 25.60 0.21 -29.94 16 16 H 0.05 2.88 7.78 -2.91 -0.02 2.85 16 17 C 0.03 1.69 5.28 84.65 0.45 2.13 16 18 N -0.91 -49.26 11.00 21.45 0.24 -49.02 16 19 Si 0.96 42.23 29.54 68.60 2.03 44.26 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.05 2.44 4.49 86.65 0.39 2.83 16 24 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 2.13 3.82 -2.39 -0.01 2.12 16 28 H 0.06 1.10 5.32 -2.39 -0.01 1.09 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.84 5.91 -2.39 -0.01 1.83 16 32 H 0.10 2.07 8.02 -2.38 -0.02 2.05 16 33 H 0.42 5.17 9.10 -74.06 -0.67 4.49 16 34 H 0.09 2.63 3.05 -2.39 -0.01 2.62 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 2.45 7.69 -2.39 -0.02 2.44 16 37 H 0.04 2.20 7.99 -2.39 -0.02 2.18 16 38 H 0.37 21.05 7.46 -74.06 -0.55 20.50 16 39 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 3.38 4.02 -2.39 -0.01 3.37 16 Total: -1.00 -67.35 313.45 -0.50 -67.85 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.16 Total: 38.38 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 3.66 Total: -9.63 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -3.77 Total: -72.83 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -2.26 Total: -68.03 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.35 -0.50 -67.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609691290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.935 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds