Wall clock time and date at job start Mon Mar 30 2020 01:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.52996 * 109.47116 * 240.00110 * 2 1 3 5 5 C 1.52997 * 109.47309 * 185.00083 * 4 2 1 6 6 H 1.08998 * 109.46877 * 304.99782 * 5 4 2 7 7 C 1.50702 * 109.47372 * 185.00261 * 5 4 2 8 8 O 1.20828 * 119.99543 * 265.95376 * 7 5 4 9 9 O 1.34232 * 120.00181 * 85.95139 * 7 5 4 10 10 N 1.46894 * 109.47530 * 64.99693 * 5 4 2 11 11 C 1.48540 * 110.99593 * 50.35973 * 10 5 4 12 12 C 1.54941 * 103.22666 * 159.72195 * 11 10 5 13 13 C 1.54591 * 102.92051 * 322.58436 * 12 11 10 14 14 O 1.42902 * 110.39510 * 262.99945 * 13 12 11 15 15 C 1.50704 * 110.30809 * 140.87207 * 13 12 11 16 16 H 1.07997 * 120.00018 * 242.52620 * 15 13 12 17 17 C 1.37873 * 119.99875 * 62.53285 * 15 13 12 18 18 N 1.31515 * 119.99911 * 353.25971 * 17 15 13 19 19 Si 1.86804 * 120.00266 * 173.26452 * 17 15 13 20 20 H 1.48508 * 109.46911 * 94.94057 * 19 17 15 21 21 H 1.48495 * 109.47479 * 214.94389 * 19 17 15 22 22 H 1.48499 * 109.46727 * 334.94453 * 19 17 15 23 23 C 1.47897 * 111.00421 * 167.75159 * 10 5 4 24 24 H 1.08995 * 109.47261 * 59.99673 * 1 2 3 25 25 H 1.09001 * 109.46912 * 299.99368 * 1 2 3 26 26 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47079 * 120.00294 * 2 1 3 28 28 H 1.08994 * 109.47390 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47015 * 300.00733 * 3 2 1 30 30 H 1.08999 * 109.46758 * 59.99725 * 3 2 1 31 31 H 1.09004 * 109.47105 * 305.00075 * 4 2 1 32 32 H 1.09003 * 109.46911 * 64.99651 * 4 2 1 33 33 H 0.96696 * 116.99933 * 180.02562 * 9 7 5 34 34 H 1.09005 * 110.66384 * 278.15668 * 11 10 5 35 35 H 1.08996 * 110.66921 * 41.28643 * 11 10 5 36 36 H 1.08992 * 110.72009 * 204.22343 * 12 11 10 37 37 H 1.09002 * 110.72464 * 80.94293 * 12 11 10 38 38 H 0.96701 * 113.99735 * 295.76664 * 14 13 12 39 39 H 0.97006 * 120.00113 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.91890 * 333.51712 * 23 10 5 41 41 H 1.09005 * 109.91569 * 94.80654 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 1 3.9954 0.1611 -1.0528 7 6 4.0773 -1.4302 -2.4723 8 8 4.2666 -2.6210 -2.5501 9 8 4.3235 -0.6409 -3.5298 10 7 3.9491 -1.6895 -0.0596 11 6 3.1989 -2.9712 -0.0864 12 6 4.0676 -3.9088 0.7895 13 6 5.5089 -3.4862 0.4237 14 8 6.0477 -4.3615 -0.5691 15 6 6.3824 -3.4890 1.6518 16 1 6.8350 -2.5703 1.9946 17 6 6.6036 -4.6643 2.3378 18 7 5.9499 -5.7549 2.0017 19 14 7.8318 -4.7078 3.7446 20 1 7.1183 -4.5042 5.0310 21 1 8.5180 -6.0246 3.7622 22 1 8.8353 -3.6291 3.5590 23 6 5.3794 -2.0578 -0.1367 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1582 -2.1369 33 1 4.6508 -1.0709 -4.3317 34 1 2.2078 -2.8461 0.3498 35 1 3.1268 -3.3536 -1.1046 36 1 3.8933 -4.9523 0.5275 37 1 3.8724 -3.7379 1.8482 38 1 6.1520 -5.2760 -0.2723 39 1 6.1052 -6.5818 2.4845 40 1 5.7135 -2.0341 -1.1740 41 1 5.9732 -1.3682 0.4633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609691295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:39 Heat of formation + Delta-G solvation = -140.529760 kcal Electronic energy + Delta-G solvation = -22821.528290 eV Core-core repulsion = 19508.274731 eV Total energy + Delta-G solvation = -3313.253559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68038 -38.12034 -36.54351 -35.78768 -34.19495 -32.03372 -30.96215 -28.36844 -27.44966 -27.07261 -24.65302 -24.32747 -21.42834 -20.38305 -19.36035 -19.25606 -17.86505 -17.04403 -16.44649 -15.69110 -15.38727 -14.77159 -14.68225 -13.96837 -13.94317 -13.88136 -13.45258 -13.13490 -12.58559 -12.28146 -12.10544 -11.94494 -11.81689 -11.64265 -11.24246 -11.20678 -11.05399 -10.93853 -10.81830 -10.53033 -10.49860 -10.40016 -10.35305 -10.18893 -10.12320 -9.87382 -8.99725 -8.56870 -7.97832 -7.82677 -6.12455 -4.19204 2.48266 3.26685 3.29071 3.34233 3.38973 4.35536 4.42877 4.82939 4.97075 5.01873 5.14919 5.30858 5.42882 5.51619 5.66441 5.73858 5.77462 5.80949 5.89011 5.97630 6.04100 6.13515 6.21258 6.23700 6.37924 6.44015 6.45510 6.51134 6.62494 6.83169 6.99426 7.14094 7.31947 7.55300 7.66559 7.70276 7.89220 8.18003 8.24076 8.82071 9.48385 9.58018 10.93700 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.006017 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.996477 B = 4652.600502 C = 5229.899143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.084 3.916 6 H 0.112 0.888 7 C 0.439 3.561 8 O -0.483 6.483 9 O -0.527 6.527 10 N -0.478 5.478 11 C 0.015 3.985 12 C -0.110 4.110 13 C 0.250 3.750 14 O -0.585 6.585 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.045 3.955 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.265 0.735 40 H 0.044 0.956 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 10.479 -6.252 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.028 4.028 6 H 0.130 0.870 7 C 0.278 3.722 8 O -0.369 6.369 9 O -0.339 6.339 10 N -0.202 5.202 11 C -0.112 4.112 12 C -0.149 4.149 13 C 0.210 3.790 14 O -0.392 6.392 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.082 4.082 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.918 10.995 -5.749 15.280 hybrid contribution 1.124 -1.368 -0.176 1.779 sum -7.794 9.627 -5.925 13.731 Atomic orbital electron populations 1.21838 0.95566 1.01594 1.01349 1.21034 0.94893 0.96254 0.98753 1.21872 1.01562 0.95823 1.01138 1.21688 0.91421 1.01901 0.99110 1.22070 0.97376 0.99934 0.83383 0.87047 1.25389 0.74682 0.86178 0.85973 1.90829 1.46979 1.16563 1.82491 1.84610 1.78849 1.45967 1.24453 1.65353 1.06133 1.15735 1.33013 1.23627 0.97063 0.89518 1.01013 1.22889 0.96335 0.97378 0.98258 1.19205 0.89827 0.84417 0.85520 1.86183 1.86744 1.23874 1.42427 1.21715 1.30051 0.94811 1.10342 0.92140 1.25009 0.95544 0.95673 0.97114 1.69809 1.40734 1.00777 1.42118 0.86506 0.81467 0.77492 0.82078 1.20692 1.21127 1.19816 1.23042 0.86876 0.98534 0.99777 0.93132 0.92705 0.92785 0.89099 0.92144 0.93220 0.92866 0.90863 0.91246 0.74249 0.91955 0.91752 0.91686 0.91676 0.77526 0.92554 0.93783 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.09 -1.06 2.86 -90.62 -0.26 -1.32 16 3 C -0.15 -1.54 8.96 37.16 0.33 -1.21 16 4 C -0.10 -1.32 3.76 -26.73 -0.10 -1.42 16 5 C 0.08 1.30 2.43 -68.87 -0.17 1.13 16 6 H 0.11 1.58 6.34 -51.93 -0.33 1.25 16 7 C 0.44 7.33 6.00 36.01 0.22 7.55 16 8 O -0.48 -9.98 13.19 -18.75 -0.25 -10.23 16 9 O -0.53 -6.98 13.42 -39.26 -0.53 -7.50 16 10 N -0.48 -9.10 4.77 -223.88 -1.07 -10.17 16 11 C 0.01 0.29 4.69 -1.89 -0.01 0.29 16 12 C -0.11 -2.65 5.24 -24.87 -0.13 -2.78 16 13 C 0.25 6.44 1.00 -90.42 -0.09 6.35 16 14 O -0.58 -16.05 12.94 -35.23 -0.46 -16.51 16 15 C -0.53 -14.59 8.10 -34.44 -0.28 -14.86 16 16 H 0.06 1.66 7.35 -52.49 -0.39 1.27 16 17 C 0.07 1.85 5.22 -17.82 -0.09 1.76 16 18 N -0.89 -24.49 10.91 55.43 0.60 -23.89 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.04 1.01 5.55 -2.76 -0.02 0.99 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.26 7.62 -51.93 -0.40 0.86 16 28 H 0.06 0.67 6.46 -51.93 -0.34 0.34 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.01 6.45 -51.93 -0.33 0.67 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 3.77 9.10 45.56 0.41 4.18 16 34 H 0.06 1.12 7.58 -51.93 -0.39 0.72 16 35 H 0.06 1.37 5.48 -51.93 -0.28 1.09 16 36 H 0.06 1.66 7.93 -51.93 -0.41 1.25 16 37 H 0.06 1.65 7.86 -51.93 -0.41 1.24 16 38 H 0.38 10.40 7.44 45.56 0.34 10.74 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.04 1.02 5.10 -51.93 -0.26 0.76 16 41 H 0.08 1.74 7.39 -51.93 -0.38 1.36 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -30.43 318.37 -7.02 -37.44 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -4.85 Total: 14.62 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.25 Total: -4.64 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: -0.46 Total: -34.06 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.23 Total: -34.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.43 -7.02 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609691295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.086 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds