Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.52996 * 109.47116 * 240.00110 * 2 1 3 5 5 C 1.52997 * 109.47309 * 185.00083 * 4 2 1 6 6 H 1.08998 * 109.46877 * 304.99782 * 5 4 2 7 7 C 1.50702 * 109.47372 * 185.00261 * 5 4 2 8 8 O 1.20828 * 119.99543 * 265.95376 * 7 5 4 9 9 O 1.34232 * 120.00181 * 85.95139 * 7 5 4 10 10 N 1.46894 * 109.47530 * 64.99693 * 5 4 2 11 11 C 1.48540 * 110.99593 * 50.35973 * 10 5 4 12 12 C 1.54941 * 103.22666 * 159.72195 * 11 10 5 13 13 C 1.54591 * 102.92051 * 322.58436 * 12 11 10 14 14 O 1.42902 * 110.39510 * 262.99945 * 13 12 11 15 15 C 1.50704 * 110.30809 * 140.87207 * 13 12 11 16 16 H 1.07997 * 120.00018 * 242.52620 * 15 13 12 17 17 C 1.37873 * 119.99875 * 62.53285 * 15 13 12 18 18 N 1.31515 * 119.99911 * 353.25971 * 17 15 13 19 19 Si 1.86804 * 120.00266 * 173.26452 * 17 15 13 20 20 H 1.48508 * 109.46911 * 94.94057 * 19 17 15 21 21 H 1.48495 * 109.47479 * 214.94389 * 19 17 15 22 22 H 1.48499 * 109.46727 * 334.94453 * 19 17 15 23 23 C 1.47897 * 111.00421 * 167.75159 * 10 5 4 24 24 H 1.08995 * 109.47261 * 59.99673 * 1 2 3 25 25 H 1.09001 * 109.46912 * 299.99368 * 1 2 3 26 26 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47079 * 120.00294 * 2 1 3 28 28 H 1.08994 * 109.47390 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47015 * 300.00733 * 3 2 1 30 30 H 1.08999 * 109.46758 * 59.99725 * 3 2 1 31 31 H 1.09004 * 109.47105 * 305.00075 * 4 2 1 32 32 H 1.09003 * 109.46911 * 64.99651 * 4 2 1 33 33 H 0.96696 * 116.99933 * 180.02562 * 9 7 5 34 34 H 1.09005 * 110.66384 * 278.15668 * 11 10 5 35 35 H 1.08996 * 110.66921 * 41.28643 * 11 10 5 36 36 H 1.08992 * 110.72009 * 204.22343 * 12 11 10 37 37 H 1.09002 * 110.72464 * 80.94293 * 12 11 10 38 38 H 0.96701 * 113.99735 * 295.76664 * 14 13 12 39 39 H 0.97006 * 120.00113 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.91890 * 333.51712 * 23 10 5 41 41 H 1.09005 * 109.91569 * 94.80654 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 1 3.9954 0.1611 -1.0528 7 6 4.0773 -1.4302 -2.4723 8 8 4.2666 -2.6210 -2.5501 9 8 4.3235 -0.6409 -3.5298 10 7 3.9491 -1.6895 -0.0596 11 6 3.1989 -2.9712 -0.0864 12 6 4.0676 -3.9088 0.7895 13 6 5.5089 -3.4862 0.4237 14 8 6.0477 -4.3615 -0.5691 15 6 6.3824 -3.4890 1.6518 16 1 6.8350 -2.5703 1.9946 17 6 6.6036 -4.6643 2.3378 18 7 5.9499 -5.7549 2.0017 19 14 7.8318 -4.7078 3.7446 20 1 7.1183 -4.5042 5.0310 21 1 8.5180 -6.0246 3.7622 22 1 8.8353 -3.6291 3.5590 23 6 5.3794 -2.0578 -0.1367 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1582 -2.1369 33 1 4.6508 -1.0709 -4.3317 34 1 2.2078 -2.8461 0.3498 35 1 3.1268 -3.3536 -1.1046 36 1 3.8933 -4.9523 0.5275 37 1 3.8724 -3.7379 1.8482 38 1 6.1520 -5.2760 -0.2723 39 1 6.1052 -6.5818 2.4845 40 1 5.7135 -2.0341 -1.1740 41 1 5.9732 -1.3682 0.4633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609691295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = -163.856164 kcal Electronic energy + Delta-G solvation = -22822.539798 eV Core-core repulsion = 19508.274731 eV Total energy + Delta-G solvation = -3314.265068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.07396 -39.66176 -37.88601 -37.10007 -35.79215 -34.15466 -32.46255 -30.07530 -29.13968 -27.89235 -26.26801 -25.84393 -22.98583 -21.63090 -21.22308 -20.44722 -19.21296 -19.01441 -17.84724 -17.12919 -16.85792 -16.63215 -16.08120 -15.80969 -15.44312 -14.98552 -14.78544 -14.39053 -14.13240 -13.90463 -13.46972 -13.27072 -13.21924 -12.95274 -12.86659 -12.69590 -12.56510 -12.35407 -12.29320 -12.24705 -12.04544 -11.99918 -11.87502 -11.41635 -11.39523 -11.37211 -10.95769 -10.65166 -10.03310 -9.41758 -8.19119 -6.33979 1.17529 1.39783 1.42071 1.52594 2.11263 2.39586 2.88384 3.08152 3.68937 3.89396 4.00804 4.06875 4.24830 4.28098 4.34397 4.40270 4.57556 4.59392 4.64188 4.78671 4.85761 4.88620 4.97278 5.01289 5.11520 5.16355 5.20660 5.26700 5.40239 5.43856 5.58592 5.63560 5.64331 5.67391 5.77151 5.87566 6.01600 6.17807 6.70611 6.98829 7.36520 7.42192 8.85701 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.006017 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.996477 B = 4652.600502 C = 5229.899143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.097 4.097 5 C 0.081 3.919 6 H 0.131 0.869 7 C 0.444 3.556 8 O -0.529 6.529 9 O -0.513 6.513 10 N -0.473 5.473 11 C 0.031 3.969 12 C -0.102 4.102 13 C 0.234 3.766 14 O -0.595 6.595 15 C -0.557 4.557 16 H 0.054 0.946 17 C 0.027 3.973 18 N -0.912 5.912 19 Si 0.960 3.040 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.054 3.946 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.419 0.581 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.369 0.631 39 H 0.267 0.733 40 H 0.036 0.964 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 12.303 -6.459 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.135 4.135 5 C -0.030 4.030 6 H 0.149 0.851 7 C 0.285 3.715 8 O -0.418 6.418 9 O -0.325 6.325 10 N -0.197 5.197 11 C -0.096 4.096 12 C -0.141 4.141 13 C 0.194 3.806 14 O -0.402 6.402 15 C -0.595 4.595 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.552 5.552 19 Si 0.785 3.215 20 H -0.200 1.200 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.074 4.074 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.280 0.720 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.217 0.783 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.738 12.854 -5.984 17.200 hybrid contribution 1.374 -1.893 -0.192 2.347 sum -8.364 10.961 -6.176 15.108 Atomic orbital electron populations 1.21806 0.94053 1.01709 1.02441 1.20997 0.96132 0.96646 0.96987 1.21855 1.00963 0.95057 1.02313 1.21713 0.88968 1.01989 1.00804 1.22257 0.99493 0.99421 0.81853 0.85145 1.25425 0.73666 0.85539 0.86841 1.90829 1.49094 1.18476 1.83364 1.84538 1.78200 1.45091 1.24677 1.65285 1.03846 1.15075 1.35487 1.23437 0.97432 0.89100 0.99628 1.22653 0.96687 0.97008 0.97751 1.19483 0.90182 0.85744 0.85164 1.86185 1.87102 1.23670 1.43222 1.21964 1.31063 0.94987 1.11457 0.92749 1.25720 0.96941 0.95296 0.99373 1.69904 1.41315 1.01094 1.42871 0.85530 0.79226 0.77469 0.79272 1.20018 1.20637 1.19698 1.22840 0.89160 0.96543 0.98840 0.91692 0.91987 0.93207 0.91515 0.93032 0.91600 0.92211 0.91861 0.88848 0.72005 0.89471 0.92665 0.93971 0.93524 0.78301 0.92354 0.94604 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 2 C -0.09 -1.87 2.86 -10.79 -0.03 -1.90 16 3 C -0.14 -2.61 8.96 71.98 0.64 -1.96 16 4 C -0.10 -2.24 3.76 30.59 0.11 -2.13 16 5 C 0.08 2.36 2.43 44.17 0.11 2.47 16 6 H 0.13 3.37 6.34 -2.39 -0.02 3.35 16 7 C 0.44 14.18 6.00 71.24 0.43 14.61 16 8 O -0.53 -21.69 13.19 21.96 0.29 -21.40 16 9 O -0.51 -12.22 13.42 -51.44 -0.69 -12.92 16 10 N -0.47 -17.75 4.77 -862.23 -4.11 -21.86 16 11 C 0.03 1.25 4.69 86.65 0.41 1.66 16 12 C -0.10 -5.06 5.24 31.80 0.17 -4.89 16 13 C 0.23 12.32 1.00 -10.66 -0.01 12.31 16 14 O -0.59 -33.69 12.94 -148.98 -1.93 -35.62 16 15 C -0.56 -31.16 8.10 25.60 0.21 -30.95 16 16 H 0.05 3.03 7.35 -2.91 -0.02 3.00 16 17 C 0.03 1.47 5.22 84.65 0.44 1.91 16 18 N -0.91 -50.84 10.91 21.45 0.23 -50.60 16 19 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.05 2.44 5.55 86.45 0.48 2.92 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.74 7.62 -2.38 -0.02 1.72 16 28 H 0.05 1.02 6.46 -2.39 -0.02 1.00 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.61 6.45 -2.38 -0.02 1.60 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.42 6.86 9.10 -74.06 -0.67 6.19 16 34 H 0.09 3.06 7.58 -2.38 -0.02 3.04 16 35 H 0.06 2.37 5.48 -2.39 -0.01 2.36 16 36 H 0.04 2.23 7.93 -2.39 -0.02 2.21 16 37 H 0.05 2.43 7.86 -2.39 -0.02 2.41 16 38 H 0.37 21.27 7.44 -74.06 -0.55 20.72 16 39 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 40 H 0.04 1.68 5.10 -2.39 -0.01 1.67 16 41 H 0.07 3.39 7.39 -2.38 -0.02 3.37 16 Total: -1.00 -66.11 318.37 -0.74 -66.85 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.18 Total: 37.79 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 3.62 Total: -7.75 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -3.88 Total: -72.46 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -2.33 Total: -69.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.11 -0.74 -66.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609691295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.010 kcal (2) G-P(sol) polarization free energy of solvation -66.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds