Wall clock time and date at job start Mon Mar 30 2020 01:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 C 1.52994 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47004 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47092 * 304.99936 * 5 4 3 7 7 C 1.50701 * 109.47001 * 185.00142 * 5 4 3 8 8 O 1.20827 * 120.00098 * 263.38853 * 7 5 4 9 9 O 1.34227 * 120.00439 * 83.39101 * 7 5 4 10 10 N 1.46892 * 109.47279 * 65.00042 * 5 4 3 11 11 C 1.48540 * 111.00240 * 50.74484 * 10 5 4 12 12 C 1.54931 * 103.22984 * 159.71913 * 11 10 5 13 13 C 1.54597 * 102.92430 * 322.59023 * 12 11 10 14 14 O 1.42900 * 110.38986 * 262.99607 * 13 12 11 15 15 C 1.50699 * 110.31091 * 140.87203 * 13 12 11 16 16 H 1.08002 * 119.99694 * 244.84353 * 15 13 12 17 17 C 1.37869 * 120.00089 * 64.84728 * 15 13 12 18 18 N 1.31516 * 120.00081 * 352.48343 * 17 15 13 19 19 Si 1.86803 * 120.00022 * 172.47594 * 17 15 13 20 20 H 1.48499 * 109.46865 * 94.88757 * 19 17 15 21 21 H 1.48503 * 109.47339 * 214.88524 * 19 17 15 22 22 H 1.48496 * 109.47255 * 334.89161 * 19 17 15 23 23 C 1.47901 * 111.00154 * 168.13949 * 10 5 4 24 24 H 1.09001 * 109.47057 * 300.00125 * 1 2 3 25 25 H 1.08995 * 109.47514 * 59.99942 * 1 2 3 26 26 H 1.09000 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47411 * 240.00357 * 2 1 3 28 28 H 1.09000 * 109.47418 * 119.99598 * 2 1 3 29 29 H 1.09001 * 109.47372 * 60.00068 * 3 2 1 30 30 H 1.08995 * 109.47089 * 300.00318 * 3 2 1 31 31 H 1.09001 * 109.47222 * 60.00337 * 4 3 2 32 32 H 1.09000 * 109.47316 * 299.99604 * 4 3 2 33 33 H 0.96697 * 117.00662 * 179.97438 * 9 7 5 34 34 H 1.08991 * 110.66811 * 278.15990 * 11 10 5 35 35 H 1.09003 * 110.66187 * 41.28433 * 11 10 5 36 36 H 1.08992 * 110.72720 * 204.22880 * 12 11 10 37 37 H 1.09008 * 110.72317 * 80.94451 * 12 11 10 38 38 H 0.96698 * 114.00393 * 295.75868 * 14 13 12 39 39 H 0.97006 * 120.00008 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.91877 * 333.51241 * 23 10 5 41 41 H 1.09007 * 109.91706 * 94.80461 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4247 -0.8413 7 6 5.5817 2.8870 -0.1245 8 8 6.2698 2.9774 0.8646 9 8 6.1551 2.7884 -1.3341 10 7 3.6918 3.5411 1.2557 11 6 4.0767 2.7153 2.4289 12 6 4.0912 3.7378 3.5928 13 6 4.6613 5.0113 2.9272 14 8 6.0644 5.1178 3.1764 15 6 3.9456 6.2345 3.4397 16 1 3.3470 6.8313 2.7674 17 6 4.0550 6.5918 4.7668 18 7 4.6589 5.7896 5.6162 19 14 3.3457 8.2155 5.3585 20 1 1.9794 7.9923 5.8956 21 1 4.2124 8.7744 6.4270 22 1 3.2813 9.1706 4.2232 23 6 4.3982 4.8300 1.4208 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9287 0.8891 33 1 7.1216 2.7943 -1.3637 34 1 3.3365 1.9362 2.6103 35 1 5.0663 2.2814 2.2857 36 1 4.7436 3.3977 4.3969 37 1 3.0813 3.9151 3.9630 38 1 6.2905 5.2337 4.1094 39 1 4.7355 6.0409 6.5500 40 1 5.3437 4.8074 0.8788 41 1 3.7752 5.6449 1.0519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609962825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:48 Heat of formation + Delta-G solvation = -143.901173 kcal Electronic energy + Delta-G solvation = -22507.487543 eV Core-core repulsion = 19194.087788 eV Total energy + Delta-G solvation = -3313.399754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64662 -38.06666 -36.14017 -35.77028 -34.29687 -32.00759 -31.73432 -29.01651 -27.84737 -26.37683 -24.34181 -23.07886 -21.48281 -20.95010 -19.51350 -19.34072 -17.83797 -17.04363 -16.40193 -15.85546 -15.46797 -14.81642 -14.75549 -14.12580 -13.93104 -13.79828 -13.55341 -12.94655 -12.75804 -12.62703 -12.16056 -11.83613 -11.79819 -11.32196 -11.22078 -11.12929 -11.06679 -11.01979 -10.80744 -10.63746 -10.49370 -10.43625 -10.38919 -10.20393 -10.13334 -9.87646 -9.00266 -8.56247 -7.96925 -7.83334 -6.12741 -4.18837 2.47937 3.26789 3.28516 3.34377 3.39219 4.35616 4.42906 4.77130 4.98637 5.04752 5.13922 5.22157 5.30882 5.48187 5.56336 5.70645 5.78169 5.82627 5.89429 5.92693 6.01017 6.14739 6.17233 6.21594 6.34955 6.42573 6.46183 6.46985 6.60916 6.82528 6.99007 7.13750 7.31413 7.54761 7.65724 7.69253 7.89796 8.17674 8.24288 8.82111 9.48787 9.60632 10.93726 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.005868 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.454768 B = 4770.810437 C = 5688.000568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.108 4.108 5 C 0.085 3.915 6 H 0.110 0.890 7 C 0.438 3.562 8 O -0.482 6.482 9 O -0.528 6.528 10 N -0.479 5.479 11 C 0.016 3.984 12 C -0.112 4.112 13 C 0.252 3.748 14 O -0.584 6.584 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.043 3.957 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.377 0.623 39 H 0.265 0.735 40 H 0.046 0.954 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -9.967 -11.089 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.146 4.146 5 C -0.026 4.026 6 H 0.128 0.872 7 C 0.277 3.723 8 O -0.367 6.367 9 O -0.339 6.339 10 N -0.203 5.203 11 C -0.110 4.110 12 C -0.151 4.151 13 C 0.212 3.788 14 O -0.392 6.392 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.084 4.084 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.258 0.742 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.902 -9.945 -11.281 15.537 hybrid contribution 1.172 0.890 1.008 1.784 sum -2.730 -9.055 -10.273 13.964 Atomic orbital electron populations 1.21759 0.95963 1.01166 1.02010 1.21537 0.95835 0.97224 1.01624 1.21525 0.93508 0.96328 1.03543 1.21632 0.97347 0.92859 1.02753 1.22014 0.84630 0.98418 0.97581 0.87211 1.25374 0.94001 0.72342 0.80583 1.90843 1.64933 1.43165 1.37739 1.84604 1.28358 1.85583 1.35356 1.65356 1.51235 1.04005 0.99726 1.23592 0.99229 0.96815 0.91401 1.22922 1.01640 0.95281 0.95283 1.19181 0.79632 0.92201 0.87835 1.86176 1.25195 1.96032 1.31800 1.21729 1.30072 1.10551 0.94613 0.92110 1.25001 0.94792 0.96989 0.96496 1.69778 1.44164 1.35800 1.03792 0.86508 0.78752 0.83859 0.78435 1.20699 1.21117 1.19805 1.23062 0.95913 0.89880 0.99498 0.92488 0.92850 0.93186 0.92477 0.92162 0.90023 0.91916 0.91225 0.90936 0.74234 0.91945 0.91883 0.91716 0.91688 0.77397 0.92528 0.93581 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.11 -1.29 5.10 -26.73 -0.14 -1.42 16 4 C -0.11 -1.36 4.30 -26.73 -0.11 -1.48 16 5 C 0.09 1.32 2.56 -68.87 -0.18 1.14 16 6 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 7 C 0.44 7.28 6.08 36.01 0.22 7.50 16 8 O -0.48 -9.94 13.07 -18.75 -0.25 -10.18 16 9 O -0.53 -6.91 13.42 -39.25 -0.53 -7.44 16 10 N -0.48 -9.14 4.85 -223.88 -1.09 -10.22 16 11 C 0.02 0.33 4.70 -1.90 -0.01 0.32 16 12 C -0.11 -2.71 5.36 -24.87 -0.13 -2.85 16 13 C 0.25 6.48 1.00 -90.41 -0.09 6.39 16 14 O -0.58 -16.08 12.93 -35.23 -0.46 -16.54 16 15 C -0.53 -14.63 8.09 -34.44 -0.28 -14.91 16 16 H 0.06 1.67 7.36 -52.49 -0.39 1.28 16 17 C 0.07 1.87 5.23 -17.82 -0.09 1.78 16 18 N -0.90 -24.55 10.93 55.43 0.61 -23.94 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.04 0.98 5.53 -2.75 -0.02 0.97 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 33 H 0.40 3.73 9.10 45.56 0.41 4.14 16 34 H 0.06 1.12 7.54 -51.93 -0.39 0.72 16 35 H 0.06 1.34 5.53 -51.93 -0.29 1.06 16 36 H 0.06 1.65 7.99 -51.93 -0.41 1.23 16 37 H 0.06 1.64 7.86 -51.92 -0.41 1.23 16 38 H 0.38 10.49 7.29 45.56 0.33 10.82 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 40 H 0.05 1.07 5.06 -51.93 -0.26 0.81 16 41 H 0.08 1.74 7.39 -51.92 -0.38 1.35 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -30.53 322.57 -7.53 -38.05 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -5.04 Total: 14.30 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.62 Total: -4.97 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.48 Total: -34.17 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.23 Total: -34.16 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.53 -7.53 -38.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609962825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.848 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds