Wall clock time and date at job start Mon Mar 30 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 C 1.52994 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47004 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47092 * 304.99936 * 5 4 3 7 7 C 1.50701 * 109.47001 * 185.00142 * 5 4 3 8 8 O 1.20827 * 120.00098 * 263.38853 * 7 5 4 9 9 O 1.34227 * 120.00439 * 83.39101 * 7 5 4 10 10 N 1.46892 * 109.47279 * 65.00042 * 5 4 3 11 11 C 1.48540 * 111.00240 * 50.74484 * 10 5 4 12 12 C 1.54931 * 103.22984 * 159.71913 * 11 10 5 13 13 C 1.54597 * 102.92430 * 322.59023 * 12 11 10 14 14 O 1.42900 * 110.38986 * 262.99607 * 13 12 11 15 15 C 1.50699 * 110.31091 * 140.87203 * 13 12 11 16 16 H 1.08002 * 119.99694 * 244.84353 * 15 13 12 17 17 C 1.37869 * 120.00089 * 64.84728 * 15 13 12 18 18 N 1.31516 * 120.00081 * 352.48343 * 17 15 13 19 19 Si 1.86803 * 120.00022 * 172.47594 * 17 15 13 20 20 H 1.48499 * 109.46865 * 94.88757 * 19 17 15 21 21 H 1.48503 * 109.47339 * 214.88524 * 19 17 15 22 22 H 1.48496 * 109.47255 * 334.89161 * 19 17 15 23 23 C 1.47901 * 111.00154 * 168.13949 * 10 5 4 24 24 H 1.09001 * 109.47057 * 300.00125 * 1 2 3 25 25 H 1.08995 * 109.47514 * 59.99942 * 1 2 3 26 26 H 1.09000 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47411 * 240.00357 * 2 1 3 28 28 H 1.09000 * 109.47418 * 119.99598 * 2 1 3 29 29 H 1.09001 * 109.47372 * 60.00068 * 3 2 1 30 30 H 1.08995 * 109.47089 * 300.00318 * 3 2 1 31 31 H 1.09001 * 109.47222 * 60.00337 * 4 3 2 32 32 H 1.09000 * 109.47316 * 299.99604 * 4 3 2 33 33 H 0.96697 * 117.00662 * 179.97438 * 9 7 5 34 34 H 1.08991 * 110.66811 * 278.15990 * 11 10 5 35 35 H 1.09003 * 110.66187 * 41.28433 * 11 10 5 36 36 H 1.08992 * 110.72720 * 204.22880 * 12 11 10 37 37 H 1.09008 * 110.72317 * 80.94451 * 12 11 10 38 38 H 0.96698 * 114.00393 * 295.75868 * 14 13 12 39 39 H 0.97006 * 120.00008 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.91877 * 333.51241 * 23 10 5 41 41 H 1.09007 * 109.91706 * 94.80461 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4247 -0.8413 7 6 5.5817 2.8870 -0.1245 8 8 6.2698 2.9774 0.8646 9 8 6.1551 2.7884 -1.3341 10 7 3.6918 3.5411 1.2557 11 6 4.0767 2.7153 2.4289 12 6 4.0912 3.7378 3.5928 13 6 4.6613 5.0113 2.9272 14 8 6.0644 5.1178 3.1764 15 6 3.9456 6.2345 3.4397 16 1 3.3470 6.8313 2.7674 17 6 4.0550 6.5918 4.7668 18 7 4.6589 5.7896 5.6162 19 14 3.3457 8.2155 5.3585 20 1 1.9794 7.9923 5.8956 21 1 4.2124 8.7744 6.4270 22 1 3.2813 9.1706 4.2232 23 6 4.3982 4.8300 1.4208 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9287 0.8891 33 1 7.1216 2.7943 -1.3637 34 1 3.3365 1.9362 2.6103 35 1 5.0663 2.2814 2.2857 36 1 4.7436 3.3977 4.3969 37 1 3.0813 3.9151 3.9630 38 1 6.2905 5.2337 4.1094 39 1 4.7355 6.0409 6.5500 40 1 5.3437 4.8074 0.8788 41 1 3.7752 5.6449 1.0519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609962825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:47 Heat of formation + Delta-G solvation = -167.081668 kcal Electronic energy + Delta-G solvation = -22508.492724 eV Core-core repulsion = 19194.087788 eV Total energy + Delta-G solvation = -3314.404936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03657 -39.63466 -37.56318 -37.01126 -35.72512 -34.12867 -33.09335 -30.49197 -29.65872 -27.69794 -26.25501 -24.10340 -23.03074 -21.84514 -21.26339 -20.88893 -19.18140 -19.01026 -17.81978 -17.17041 -16.83258 -16.68651 -16.20062 -15.80283 -15.54669 -15.07864 -14.71157 -14.25447 -14.12395 -13.86606 -13.75374 -13.47611 -13.18088 -13.13279 -12.74424 -12.68610 -12.38431 -12.27325 -12.25674 -12.10216 -12.06313 -11.91922 -11.88187 -11.69750 -11.37754 -11.28573 -10.96212 -10.64550 -10.02396 -9.42100 -8.19492 -6.33709 1.18653 1.39790 1.42174 1.52748 2.11896 2.39687 2.88600 3.08080 3.69371 3.89284 4.04342 4.10667 4.24038 4.29439 4.39600 4.42198 4.48841 4.57784 4.62921 4.70808 4.77999 4.89511 4.94909 5.08461 5.10583 5.13286 5.22568 5.26713 5.41148 5.42348 5.53055 5.62461 5.64385 5.66182 5.77037 5.87809 6.01803 6.17980 6.70672 6.99764 7.36925 7.44195 8.85674 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.005868 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.454768 B = 4770.810437 C = 5688.000568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.101 4.101 5 C 0.080 3.920 6 H 0.132 0.868 7 C 0.444 3.556 8 O -0.528 6.528 9 O -0.513 6.513 10 N -0.474 5.474 11 C 0.033 3.967 12 C -0.106 4.106 13 C 0.235 3.765 14 O -0.594 6.594 15 C -0.558 4.558 16 H 0.055 0.945 17 C 0.027 3.973 18 N -0.913 5.913 19 Si 0.960 3.040 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.052 3.948 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.419 0.581 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.370 0.630 39 H 0.267 0.733 40 H 0.038 0.962 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -10.624 -12.736 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.031 4.031 6 H 0.150 0.850 7 C 0.285 3.715 8 O -0.417 6.417 9 O -0.325 6.325 10 N -0.198 5.198 11 C -0.094 4.094 12 C -0.145 4.145 13 C 0.196 3.804 14 O -0.402 6.402 15 C -0.596 4.596 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.553 5.553 19 Si 0.785 3.215 20 H -0.200 1.200 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.075 4.075 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.280 0.720 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.831 -10.618 -12.971 17.445 hybrid contribution 1.507 1.066 1.441 2.342 sum -3.323 -9.552 -11.530 15.337 Atomic orbital electron populations 1.21760 0.95536 1.01818 1.01812 1.21513 0.96194 0.96056 1.02160 1.21485 0.92602 0.97413 1.02990 1.21645 0.97995 0.90690 1.03503 1.22232 0.84442 1.00281 0.96106 0.85041 1.25404 0.94306 0.71091 0.80669 1.90844 1.65953 1.45516 1.39398 1.84532 1.30159 1.84634 1.33171 1.65286 1.50812 1.02764 1.00971 1.23397 0.99611 0.96164 0.90199 1.22699 0.99670 0.96095 0.96030 1.19458 0.78568 0.92365 0.90043 1.86178 1.26644 1.96129 1.31204 1.21989 1.30838 1.11602 0.95153 0.92691 1.25713 0.95096 0.99943 0.96510 1.69871 1.44477 1.36971 1.03988 0.85531 0.78230 0.79907 0.77835 1.20016 1.20637 1.19675 1.22862 0.95775 0.91786 0.97126 0.93492 0.92276 0.92149 0.90988 0.92580 0.92266 0.90803 0.88684 0.91954 0.72002 0.89445 0.92788 0.94003 0.93465 0.78215 0.92325 0.94375 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.12 -2.08 5.93 30.60 0.18 -1.90 16 3 C -0.11 -2.20 5.10 30.59 0.16 -2.05 16 4 C -0.10 -2.26 4.30 30.59 0.13 -2.13 16 5 C 0.08 2.32 2.56 44.17 0.11 2.43 16 6 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 7 C 0.44 14.02 6.08 71.24 0.43 14.45 16 8 O -0.53 -21.61 13.07 21.96 0.29 -21.33 16 9 O -0.51 -12.01 13.42 -51.39 -0.69 -12.70 16 10 N -0.47 -17.73 4.85 -862.23 -4.18 -21.91 16 11 C 0.03 1.34 4.70 86.65 0.41 1.74 16 12 C -0.11 -5.26 5.36 31.80 0.17 -5.09 16 13 C 0.24 12.41 1.00 -10.66 -0.01 12.40 16 14 O -0.59 -33.75 12.93 -148.98 -1.93 -35.68 16 15 C -0.56 -31.27 8.09 25.60 0.21 -31.07 16 16 H 0.05 3.06 7.36 -2.91 -0.02 3.04 16 17 C 0.03 1.50 5.23 84.65 0.44 1.94 16 18 N -0.91 -50.98 10.93 21.44 0.23 -50.75 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 C 0.05 2.37 5.53 86.45 0.48 2.85 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.50 7.72 -2.39 -0.02 1.48 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.55 6.46 -2.39 -0.02 1.54 16 33 H 0.42 6.73 9.10 -74.06 -0.67 6.06 16 34 H 0.09 3.05 7.54 -2.39 -0.02 3.03 16 35 H 0.05 2.31 5.53 -2.39 -0.01 2.29 16 36 H 0.04 2.21 7.99 -2.39 -0.02 2.19 16 37 H 0.05 2.45 7.86 -2.38 -0.02 2.43 16 38 H 0.37 21.41 7.29 -74.06 -0.54 20.87 16 39 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 40 H 0.04 1.78 5.06 -2.39 -0.01 1.77 16 41 H 0.07 3.37 7.39 -2.38 -0.02 3.35 16 Total: -1.00 -66.37 322.57 -1.00 -67.37 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.17 Total: 37.61 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 3.42 Total: -8.15 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -3.94 Total: -72.66 kcal Atomic # 8 Polarization: -67.38 SS G_CDS: -2.33 Total: -69.71 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.37 -1.00 -67.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609962825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.714 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds