Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99957 * 2 1 4 4 H 1.48507 * 109.46977 * 239.99949 * 3 2 1 5 5 H 1.48505 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47301 * 119.99947 * 3 2 1 7 7 C 1.38809 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00353 * 204.74592 * 7 2 1 9 9 N 1.36938 * 120.00039 * 24.75435 * 7 2 1 10 10 C 1.46501 * 120.00042 * 189.27772 * 9 7 2 11 11 C 1.53001 * 109.47440 * 89.99762 * 10 9 7 12 12 C 1.53001 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47002 * 179.97438 * 12 11 10 14 14 C 1.53178 * 109.54184 * 65.44586 * 13 12 11 15 15 C 1.53089 * 109.16420 * 176.84908 * 14 13 12 16 16 O 1.42903 * 109.41246 * 302.38640 * 15 14 13 17 17 C 1.42906 * 114.09885 * 61.15858 * 16 15 14 18 18 C 1.53092 * 109.41557 * 298.84732 * 17 16 15 19 19 C 1.46502 * 119.99952 * 9.26850 * 9 7 2 20 20 C 1.50706 * 109.47241 * 269.22063 * 19 9 7 21 21 O 1.20821 * 119.99757 * 359.97438 * 20 19 9 22 22 O 1.34228 * 119.99695 * 180.02562 * 20 19 9 23 23 H 0.97001 * 120.00189 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47404 * 329.99130 * 10 9 7 25 25 H 1.09003 * 109.46938 * 209.99362 * 10 9 7 26 26 H 1.08997 * 109.47338 * 59.99328 * 11 10 9 27 27 H 1.09003 * 109.46729 * 299.99728 * 11 10 9 28 28 H 1.09006 * 109.47218 * 59.99952 * 12 11 10 29 29 H 1.09003 * 109.47101 * 299.99511 * 12 11 10 30 30 H 1.08998 * 109.61482 * 305.22451 * 13 12 11 31 31 H 1.09004 * 109.52082 * 296.75158 * 14 13 12 32 32 H 1.09002 * 109.52159 * 56.93750 * 14 13 12 33 33 H 1.08999 * 109.48375 * 182.41052 * 15 14 13 34 34 H 1.08992 * 109.48730 * 62.36914 * 15 14 13 35 35 H 1.08992 * 109.48512 * 178.85675 * 17 16 15 36 36 H 1.09007 * 109.48950 * 58.82975 * 17 16 15 37 37 H 1.09006 * 109.51872 * 297.69510 * 18 17 16 38 38 H 1.08996 * 109.52156 * 177.51412 * 18 17 16 39 39 H 1.08995 * 109.47118 * 29.21945 * 19 9 7 40 40 H 1.08995 * 109.46935 * 149.21807 * 19 9 7 41 41 H 0.96701 * 116.99583 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0159 -1.2449 0.3921 9 7 1.4200 -2.3338 -0.4955 10 6 2.0647 -3.6365 -0.3127 11 6 1.5808 -4.2660 0.9952 12 6 2.2537 -5.6269 1.1858 13 6 1.7703 -6.2560 2.4940 14 6 0.2738 -6.5665 2.3910 15 6 -0.1836 -7.2668 3.6732 16 8 0.5878 -8.4540 3.8670 17 6 1.9897 -8.2209 4.0173 18 6 2.5344 -7.5588 2.7490 19 6 0.1437 -2.2417 -1.2089 20 6 -0.9913 -2.4027 -0.2307 21 8 -0.7581 -2.5769 0.9419 22 8 -2.2613 -2.3536 -0.6624 23 1 -0.4850 0.8400 -0.0004 24 1 3.1460 -3.5047 -0.2743 25 1 1.8077 -4.2894 -1.1469 26 1 0.4996 -4.3979 0.9568 27 1 1.8378 -3.6132 1.8294 28 1 3.3351 -5.4953 1.2241 29 1 1.9963 -6.2795 0.3515 30 1 1.9433 -5.5644 3.3185 31 1 -0.2829 -5.6379 2.2646 32 1 0.0952 -7.2187 1.5360 33 1 -1.2382 -7.5285 3.5880 34 1 -0.0421 -6.5987 4.5226 35 1 2.5006 -9.1698 4.1802 36 1 2.1598 -7.5653 4.8714 37 1 2.4014 -8.2311 1.9013 38 1 3.5943 -7.3401 2.8788 39 1 0.0688 -1.2693 -1.6955 40 1 0.0901 -3.0292 -1.9606 41 1 -2.9554 -2.4616 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = -153.787886 kcal Electronic energy + Delta-G solvation = -22003.194069 eV Core-core repulsion = 18689.365595 eV Total energy + Delta-G solvation = -3313.828474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57462 -40.33603 -37.94223 -36.45926 -36.08155 -33.76428 -32.11313 -31.79501 -29.22518 -27.78432 -25.37330 -24.49618 -23.37553 -22.09672 -21.49672 -20.89705 -18.78353 -18.40785 -17.27099 -16.98493 -16.95145 -16.81826 -16.23926 -15.89799 -15.59595 -15.41435 -15.21555 -14.86410 -14.39960 -14.01713 -13.59355 -13.34622 -13.21758 -12.98142 -12.68595 -12.61842 -12.50067 -12.30938 -12.22922 -12.18778 -11.96854 -11.75674 -11.69799 -11.42308 -11.17551 -11.03930 -10.89368 -10.52149 -10.39591 -9.00606 -7.96163 -5.21841 1.48092 1.50671 1.57371 2.10251 2.50105 2.84046 2.95694 3.26562 3.54010 3.78080 3.83894 3.95124 4.09940 4.25787 4.34747 4.45183 4.53875 4.59964 4.63675 4.71515 4.77610 4.77861 4.88678 4.90898 5.01443 5.10680 5.13529 5.17774 5.21130 5.25616 5.30450 5.41048 5.56356 5.63032 5.76211 6.21347 6.23266 6.24462 7.04860 7.66095 7.86502 8.18908 9.13653 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.004826 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.309468 B = 5800.633432 C = 6395.730413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.254 4.254 8 H 0.078 0.922 9 N -0.585 5.585 10 C 0.141 3.859 11 C -0.120 4.120 12 C -0.101 4.101 13 C -0.088 4.088 14 C -0.146 4.146 15 C 0.062 3.938 16 O -0.401 6.401 17 C 0.055 3.945 18 C -0.143 4.143 19 C 0.186 3.814 20 C 0.480 3.520 21 O -0.546 6.546 22 O -0.538 6.538 23 H 0.249 0.751 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 -14.112 1.692 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.212 1.212 7 C -0.384 4.384 8 H 0.096 0.904 9 N -0.305 5.305 10 C 0.016 3.984 11 C -0.160 4.160 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.184 4.184 15 C -0.015 4.015 16 O -0.320 6.320 17 C -0.022 4.022 18 C -0.181 4.181 19 C 0.056 3.944 20 C 0.321 3.679 21 O -0.435 6.435 22 O -0.349 6.349 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.396 -14.159 1.710 14.462 hybrid contribution -0.426 1.709 0.933 1.993 sum 1.970 -12.450 2.643 12.879 Atomic orbital electron populations 1.69974 1.06282 1.25649 1.55890 1.25406 0.95914 1.01040 1.02286 0.85327 0.77522 0.79410 0.78085 1.20016 1.22490 1.21164 1.19521 0.96863 0.86479 1.35530 0.90393 1.44419 1.19380 1.03700 1.62995 1.21195 0.96524 0.85090 0.95617 1.22041 1.00018 0.95329 0.98616 1.21540 1.00095 0.95302 0.96933 1.21169 0.94746 0.96715 0.98032 1.22189 0.96775 1.00386 0.99039 1.22599 0.96076 0.86750 0.96037 1.87872 1.19319 1.31571 1.93240 1.22763 0.81004 1.01890 0.96494 1.22209 1.00559 0.96153 0.99143 1.20405 0.80985 1.02262 0.90701 1.25409 0.82924 0.68919 0.90637 1.90472 1.84855 1.47370 1.20797 1.84571 1.18029 1.85960 1.46374 0.94170 0.92566 0.91693 0.93503 0.96140 0.91369 0.91243 0.92830 0.92588 0.91151 0.88068 0.93460 0.87003 0.93153 0.90795 0.89519 0.89130 0.89707 0.74480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.10 9.02 21.65 0.20 -52.90 16 2 C -0.05 -2.84 4.89 84.86 0.41 -2.43 16 3 Si 0.97 44.53 29.62 68.60 2.03 46.56 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.25 -13.57 9.70 84.03 0.82 -12.75 16 8 H 0.08 4.09 7.93 -2.91 -0.02 4.06 16 9 N -0.59 -27.98 2.09 -706.34 -1.48 -29.46 16 10 C 0.14 5.45 5.71 86.38 0.49 5.95 16 11 C -0.12 -4.57 4.55 30.59 0.14 -4.43 16 12 C -0.10 -2.81 4.69 30.60 0.14 -2.67 16 13 C -0.09 -2.31 2.27 -10.68 -0.02 -2.33 16 14 C -0.15 -3.97 5.10 30.68 0.16 -3.81 16 15 C 0.06 1.52 6.84 72.01 0.49 2.01 16 16 O -0.40 -9.98 10.77 -148.98 -1.60 -11.58 16 17 C 0.05 1.09 6.84 72.01 0.49 1.58 16 18 C -0.14 -2.91 5.42 30.68 0.17 -2.74 16 19 C 0.19 8.54 5.58 85.63 0.48 9.02 16 20 C 0.48 22.79 6.32 71.24 0.45 23.24 16 21 O -0.55 -29.30 14.42 21.98 0.32 -28.98 16 22 O -0.54 -21.56 13.42 -51.40 -0.69 -22.25 16 23 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 24 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 25 H 0.06 2.16 7.90 -2.39 -0.02 2.14 16 26 H 0.05 1.97 4.82 -2.39 -0.01 1.96 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.81 6.75 -2.38 -0.02 1.80 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 39 H 0.09 4.58 6.29 -2.39 -0.02 4.57 16 40 H 0.09 3.22 7.90 -2.39 -0.02 3.20 16 41 H 0.40 12.67 9.10 -74.06 -0.67 11.99 16 Total: -1.00 -66.51 325.18 3.33 -63.18 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.34 Total: 24.80 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.22 Total: 10.64 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.28 Total: -82.37 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -1.98 Total: -62.81 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.51 3.33 -63.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.605 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds