Wall clock time and date at job start Mon Mar 30 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47278 * 240.00424 * 3 2 1 5 5 H 1.48502 * 109.46981 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47181 * 120.00012 * 3 2 1 7 7 C 1.37879 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46670 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47283 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99992 * 0.02562 * 12 11 10 14 14 N 1.34769 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.48317 * 127.77054 * 359.93266 * 14 12 11 16 16 C 1.54391 * 104.53792 * 219.51516 * 15 14 12 17 17 C 1.54283 * 105.05272 * 336.26252 * 16 15 14 18 18 C 1.52999 * 110.34306 * 118.81938 * 17 16 15 19 19 O 1.42894 * 109.47378 * 61.45238 * 18 17 16 20 20 C 1.53006 * 110.34271 * 241.07368 * 17 16 15 21 21 O 1.42895 * 109.46964 * 298.54979 * 20 17 16 22 22 C 1.48146 * 127.83810 * 180.02562 * 14 12 11 23 23 H 0.97002 * 119.99855 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47121 * 60.00406 * 9 7 2 25 25 H 1.08998 * 109.47103 * 299.99925 * 9 7 2 26 26 H 1.08997 * 109.47560 * 60.00371 * 10 9 7 27 27 H 1.08998 * 109.47667 * 299.99818 * 10 9 7 28 28 H 1.09004 * 109.47087 * 59.99849 * 11 10 9 29 29 H 1.08998 * 109.46964 * 299.99821 * 11 10 9 30 30 H 1.09000 * 110.38040 * 100.79235 * 15 14 12 31 31 H 1.08992 * 110.50701 * 338.30692 * 15 14 12 32 32 H 1.09002 * 110.34401 * 217.33666 * 16 15 14 33 33 H 1.09000 * 110.34137 * 95.18654 * 16 15 14 34 34 H 1.08999 * 109.47461 * 181.45670 * 18 17 16 35 35 H 1.09004 * 109.47274 * 301.44862 * 18 17 16 36 36 H 0.96701 * 113.99931 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.46749 * 58.54455 * 20 17 16 38 38 H 1.09000 * 109.46913 * 178.54527 * 20 17 16 39 39 H 0.96706 * 114.00280 * 180.02562 * 21 20 17 40 40 H 1.09000 * 110.40949 * 21.63687 * 22 14 12 41 41 H 1.08998 * 110.40973 * 259.20254 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 8 3.6519 -5.9110 -0.0013 14 7 2.0103 -7.4032 -0.0019 15 6 0.6022 -7.8689 -0.0001 16 6 0.5976 -9.0857 0.9501 17 6 2.0522 -9.6000 0.9495 18 6 2.6436 -9.5245 2.3586 19 8 1.8852 -10.3564 3.2387 20 6 2.1085 -11.0359 0.4241 21 8 1.3434 -11.8866 1.2801 22 6 2.8104 -8.6500 -0.0020 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 0.3003 -8.1691 -1.0035 31 1 -0.0576 -7.0884 0.3787 32 1 -0.0768 -9.8561 0.5760 33 1 0.3038 -8.7811 1.9545 34 1 3.6783 -9.8664 2.3372 35 1 2.6087 -8.4941 2.7126 36 1 2.2042 -10.3570 4.1516 37 1 1.6967 -11.0701 -0.5846 38 1 3.1441 -11.3756 0.4055 39 1 1.3348 -12.8143 1.0071 40 1 3.8149 -8.4571 0.3747 41 1 2.8547 -9.0732 -1.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630553517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:13 Heat of formation + Delta-G solvation = -146.499485 kcal Electronic energy + Delta-G solvation = -21133.637521 eV Core-core repulsion = 17820.125096 eV Total energy + Delta-G solvation = -3313.512426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36235 -38.52394 -36.33048 -36.21736 -34.18667 -32.50026 -31.83910 -29.78618 -28.14496 -26.09674 -25.72571 -23.61646 -23.05733 -20.30093 -19.51124 -18.91787 -17.69355 -17.16420 -16.87872 -16.26830 -16.16128 -15.31485 -15.15509 -15.09927 -14.40212 -14.09042 -13.83074 -13.55683 -13.25955 -12.78070 -12.73817 -12.37223 -12.10083 -11.82025 -11.75274 -11.43944 -11.33089 -11.24432 -10.77621 -10.69074 -10.58787 -10.53638 -10.14952 -10.03544 -9.69472 -9.65929 -9.26533 -9.02043 -8.75217 -8.30487 -5.96318 -3.97794 2.86933 2.95165 3.37480 3.40793 3.44675 3.73379 3.98194 4.31011 4.49898 4.58611 4.80957 4.90964 4.93795 5.03518 5.14235 5.17726 5.18042 5.31922 5.39598 5.43084 5.46786 5.59140 5.67547 5.71589 5.75277 5.87913 6.02966 6.18171 6.31217 6.73587 6.94256 7.16700 7.43019 7.52194 7.59476 7.72290 7.85096 8.04346 8.38444 8.48260 9.09043 9.65991 11.15190 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042224 B = 0.003057 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.965633 B = 9158.231536 C = 9231.585776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.133 4.133 12 C 0.535 3.465 13 O -0.537 6.537 14 N -0.631 5.631 15 C 0.095 3.905 16 C -0.111 4.111 17 C -0.073 4.073 18 C 0.095 3.905 19 O -0.548 6.548 20 C 0.095 3.905 21 O -0.546 6.546 22 C 0.116 3.884 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.370 0.630 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.370 0.630 40 H 0.085 0.915 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -25.417 1.775 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.172 4.172 12 C 0.327 3.673 13 O -0.413 6.413 14 N -0.367 5.367 15 C -0.028 4.028 16 C -0.150 4.150 17 C -0.074 4.074 18 C 0.016 3.984 19 O -0.352 6.352 20 C 0.017 3.983 21 O -0.350 6.350 22 C -0.007 4.007 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.216 0.784 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.215 0.785 40 H 0.104 0.896 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.300 -24.561 1.529 24.642 hybrid contribution 0.836 0.459 0.135 0.963 sum 2.136 -24.102 1.664 24.254 Atomic orbital electron populations 1.69954 1.06032 1.26649 1.51116 1.25019 0.94860 0.99233 0.95380 0.86647 0.79568 0.83060 0.78676 1.20230 1.21325 1.20237 1.21237 0.93157 0.91027 1.50286 0.92629 1.19119 0.93941 0.91397 0.97128 1.21467 0.98673 0.91494 1.01688 1.21833 0.98054 0.93642 1.03704 1.21002 0.90114 0.81894 0.74338 1.90681 1.17359 1.83717 1.49557 1.49169 1.07836 1.04718 1.74995 1.22551 0.83383 0.97014 0.99848 1.22455 0.95089 0.96687 1.00728 1.21551 0.97173 0.94013 0.94696 1.22028 0.93317 0.93690 0.89329 1.86660 1.57487 1.69018 1.22033 1.22004 0.94577 0.89486 0.92259 1.86712 1.73385 1.21341 1.53530 1.22081 0.96179 0.84004 0.98485 0.93008 0.96591 0.96610 0.92709 0.92683 0.89362 0.89391 0.91037 0.89544 0.89882 0.90263 0.94053 0.93561 0.78410 0.93582 0.93891 0.78473 0.89618 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C -0.13 -2.29 4.68 -27.88 -0.13 -2.42 16 12 C 0.54 9.09 7.91 -10.99 -0.09 9.00 16 13 O -0.54 -11.09 16.25 5.56 0.09 -11.00 16 14 N -0.63 -8.22 3.32 -169.19 -0.56 -8.78 16 15 C 0.10 0.96 6.93 -2.31 -0.02 0.94 16 16 C -0.11 -1.07 5.87 -25.33 -0.15 -1.22 16 17 C -0.07 -0.69 0.73 -153.12 -0.11 -0.80 16 18 C 0.09 0.93 5.66 37.16 0.21 1.14 16 19 O -0.55 -5.46 11.37 -56.44 -0.64 -6.10 16 20 C 0.10 0.73 5.67 37.16 0.21 0.94 16 21 O -0.55 -4.65 11.37 -56.44 -0.64 -5.29 16 22 C 0.12 1.24 6.14 -2.42 -0.01 1.23 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 28 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 1.40 7.95 -51.93 -0.41 0.98 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.85 7.31 -51.93 -0.38 0.47 16 32 H 0.08 0.75 7.53 -51.93 -0.39 0.36 16 33 H 0.08 0.86 7.53 -51.93 -0.39 0.47 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.37 2.27 9.12 45.56 0.42 2.68 16 37 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.37 1.56 9.12 45.56 0.42 1.98 16 40 H 0.09 1.01 7.60 -51.93 -0.39 0.61 16 41 H 0.07 0.68 7.85 -51.93 -0.41 0.28 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -35.97 335.38 -7.05 -43.02 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.31 Total: -0.57 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.76 Total: -6.94 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.17 Total: -35.33 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.19 Total: -22.40 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.97 -7.05 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630553517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.476 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds