Wall clock time and date at job start Mon Mar 30 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47278 * 240.00424 * 3 2 1 5 5 H 1.48502 * 109.46981 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47181 * 120.00012 * 3 2 1 7 7 C 1.37879 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46670 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47283 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99992 * 0.02562 * 12 11 10 14 14 N 1.34769 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.48317 * 127.77054 * 359.93266 * 14 12 11 16 16 C 1.54391 * 104.53792 * 219.51516 * 15 14 12 17 17 C 1.54283 * 105.05272 * 336.26252 * 16 15 14 18 18 C 1.52999 * 110.34306 * 118.81938 * 17 16 15 19 19 O 1.42894 * 109.47378 * 61.45238 * 18 17 16 20 20 C 1.53006 * 110.34271 * 241.07368 * 17 16 15 21 21 O 1.42895 * 109.46964 * 298.54979 * 20 17 16 22 22 C 1.48146 * 127.83810 * 180.02562 * 14 12 11 23 23 H 0.97002 * 119.99855 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47121 * 60.00406 * 9 7 2 25 25 H 1.08998 * 109.47103 * 299.99925 * 9 7 2 26 26 H 1.08997 * 109.47560 * 60.00371 * 10 9 7 27 27 H 1.08998 * 109.47667 * 299.99818 * 10 9 7 28 28 H 1.09004 * 109.47087 * 59.99849 * 11 10 9 29 29 H 1.08998 * 109.46964 * 299.99821 * 11 10 9 30 30 H 1.09000 * 110.38040 * 100.79235 * 15 14 12 31 31 H 1.08992 * 110.50701 * 338.30692 * 15 14 12 32 32 H 1.09002 * 110.34401 * 217.33666 * 16 15 14 33 33 H 1.09000 * 110.34137 * 95.18654 * 16 15 14 34 34 H 1.08999 * 109.47461 * 181.45670 * 18 17 16 35 35 H 1.09004 * 109.47274 * 301.44862 * 18 17 16 36 36 H 0.96701 * 113.99931 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.46749 * 58.54455 * 20 17 16 38 38 H 1.09000 * 109.46913 * 178.54527 * 20 17 16 39 39 H 0.96706 * 114.00280 * 180.02562 * 21 20 17 40 40 H 1.09000 * 110.40949 * 21.63687 * 22 14 12 41 41 H 1.08998 * 110.40973 * 259.20254 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 8 3.6519 -5.9110 -0.0013 14 7 2.0103 -7.4032 -0.0019 15 6 0.6022 -7.8689 -0.0001 16 6 0.5976 -9.0857 0.9501 17 6 2.0522 -9.6000 0.9495 18 6 2.6436 -9.5245 2.3586 19 8 1.8852 -10.3564 3.2387 20 6 2.1085 -11.0359 0.4241 21 8 1.3434 -11.8866 1.2801 22 6 2.8104 -8.6500 -0.0020 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 0.3003 -8.1691 -1.0035 31 1 -0.0576 -7.0884 0.3787 32 1 -0.0768 -9.8561 0.5760 33 1 0.3038 -8.7811 1.9545 34 1 3.6783 -9.8664 2.3372 35 1 2.6087 -8.4941 2.7126 36 1 2.2042 -10.3570 4.1516 37 1 1.6967 -11.0701 -0.5846 38 1 3.1441 -11.3756 0.4055 39 1 1.3348 -12.8143 1.0071 40 1 3.8149 -8.4571 0.3747 41 1 2.8547 -9.0732 -1.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630553517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:13 Heat of formation + Delta-G solvation = -174.133675 kcal Electronic energy + Delta-G solvation = -21134.835830 eV Core-core repulsion = 17820.125096 eV Total energy + Delta-G solvation = -3314.710734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36348 -39.62264 -37.18112 -36.89865 -36.13698 -34.10500 -33.20346 -30.62981 -29.89715 -27.08317 -26.73060 -25.19557 -24.09941 -22.12162 -20.43971 -20.00087 -18.50506 -18.39171 -17.97567 -17.79124 -17.19465 -16.56734 -16.38824 -16.28344 -15.94531 -15.26271 -14.74009 -14.47869 -14.36025 -14.24227 -13.90808 -13.71109 -13.51929 -13.21972 -13.06058 -12.62590 -12.52856 -12.50152 -12.42060 -12.22338 -11.95304 -11.58308 -11.48833 -11.38660 -11.27960 -10.85251 -10.77982 -10.67874 -10.54736 -9.82100 -8.20661 -6.30925 1.39216 1.42285 1.50379 1.56983 1.87504 2.41359 3.01934 3.12185 3.34080 3.53701 3.65091 3.99100 4.13411 4.15653 4.21292 4.22042 4.31061 4.41257 4.48383 4.49783 4.57950 4.62182 4.69207 4.74773 4.86937 4.93084 4.96043 5.03533 5.10580 5.17574 5.26504 5.37073 5.52492 5.73575 5.85192 6.26130 6.45540 6.84083 6.93108 7.07692 7.11155 7.37669 8.90779 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042224 B = 0.003057 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.965633 B = 9158.231536 C = 9231.585776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.052 0.948 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.124 4.124 12 C 0.536 3.464 13 O -0.584 6.584 14 N -0.627 5.627 15 C 0.092 3.908 16 C -0.104 4.104 17 C -0.073 4.073 18 C 0.095 3.905 19 O -0.560 6.560 20 C 0.099 3.901 21 O -0.567 6.567 22 C 0.114 3.886 23 H 0.265 0.735 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.385 0.615 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.388 0.612 40 H 0.071 0.929 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -26.644 1.288 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.070 0.930 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.163 4.163 12 C 0.327 3.673 13 O -0.464 6.464 14 N -0.361 5.361 15 C -0.030 4.030 16 C -0.143 4.143 17 C -0.074 4.074 18 C 0.017 3.983 19 O -0.366 6.366 20 C 0.020 3.980 21 O -0.373 6.373 22 C -0.009 4.009 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.236 0.764 40 H 0.090 0.910 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.078 -25.854 1.051 25.898 hybrid contribution 0.843 0.746 0.325 1.172 sum 1.921 -25.108 1.377 25.219 Atomic orbital electron populations 1.70062 1.07516 1.27896 1.51454 1.25914 0.95837 1.03087 0.94625 0.85546 0.78389 0.78328 0.79073 1.19373 1.20303 1.19447 1.21664 0.93365 0.92791 1.50941 0.93014 1.18998 0.94141 0.92307 0.95512 1.21171 0.97656 0.92817 1.00328 1.21641 0.97826 0.91524 1.05355 1.20713 0.89128 0.83085 0.74398 1.90660 1.18921 1.84641 1.52193 1.49091 1.09838 1.04234 1.72894 1.22811 0.81509 0.97235 1.01452 1.22385 0.95447 0.96656 0.99771 1.21538 0.96566 0.95183 0.94083 1.21996 0.93883 0.92652 0.89775 1.86617 1.57907 1.68833 1.23238 1.21973 0.95306 0.88015 0.92686 1.86650 1.73543 1.22897 1.54251 1.22264 0.95374 0.83098 1.00121 0.92616 0.98003 0.98166 0.94149 0.93937 0.87512 0.87915 0.88533 0.89304 0.88672 0.91797 0.93289 0.95551 0.76707 0.91775 0.92955 0.76350 0.91009 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -32.71 9.11 25.60 0.23 -32.48 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.08 -3.68 4.44 30.60 0.14 -3.55 16 11 C -0.12 -4.24 4.68 29.85 0.14 -4.10 16 12 C 0.54 18.04 7.91 87.66 0.69 18.73 16 13 O -0.58 -24.53 16.25 -3.02 -0.05 -24.58 16 14 N -0.63 -15.48 3.32 -807.58 -2.68 -18.16 16 15 C 0.09 1.63 6.93 86.50 0.60 2.23 16 16 C -0.10 -1.79 5.87 31.50 0.18 -1.61 16 17 C -0.07 -1.23 0.73 -51.28 -0.04 -1.27 16 18 C 0.10 1.80 5.66 71.98 0.41 2.20 16 19 O -0.56 -10.48 11.37 -128.70 -1.46 -11.95 16 20 C 0.10 1.23 5.67 71.98 0.41 1.63 16 21 O -0.57 -8.17 11.37 -128.70 -1.46 -9.63 16 22 C 0.11 2.25 6.14 86.53 0.53 2.78 16 23 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.04 1.99 8.10 -2.39 -0.02 1.97 16 28 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 29 H 0.10 3.20 7.95 -2.39 -0.02 3.18 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.56 7.31 -2.39 -0.02 1.54 16 32 H 0.09 1.44 7.53 -2.39 -0.02 1.42 16 33 H 0.06 1.31 7.53 -2.39 -0.02 1.29 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.39 4.35 9.12 -74.06 -0.68 3.67 16 37 H 0.06 0.58 8.12 -2.38 -0.02 0.56 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.39 2.23 9.12 -74.05 -0.68 1.56 16 40 H 0.07 1.64 7.60 -2.39 -0.02 1.63 16 41 H 0.10 1.52 7.85 -2.39 -0.02 1.50 16 Total: -1.00 -77.74 335.38 0.24 -77.50 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -0.33 Total: 8.98 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 3.91 Total: -13.12 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -2.40 Total: -74.71 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.98 Total: -46.16 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -77.74 0.24 -77.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630553517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.630 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds