Wall clock time and date at job start Mon Mar 30 2020 00:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00283 * 2 1 4 4 H 1.48501 * 109.46973 * 269.99792 * 3 2 1 5 5 H 1.48495 * 109.47237 * 30.00121 * 3 2 1 6 6 H 1.48506 * 109.47304 * 150.00219 * 3 2 1 7 7 C 1.37881 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47416 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47239 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47262 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99874 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00192 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00060 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.47610 * 34.99831 * 15 14 12 17 17 C 1.53007 * 109.46866 * 274.99942 * 15 14 12 18 18 O 1.42896 * 109.46870 * 295.00077 * 17 15 14 19 19 C 1.53000 * 109.47148 * 155.00155 * 15 14 12 20 20 H 1.08994 * 110.91148 * 62.13208 * 19 15 14 21 21 C 1.55457 * 110.92315 * 185.74961 * 19 15 14 22 22 C 1.54947 * 100.98961 * 152.22637 * 21 19 15 23 23 O 1.43650 * 105.13275 * 323.60678 * 22 21 19 24 24 C 1.43233 * 109.97542 * 24.42908 * 23 22 21 25 25 H 0.96999 * 119.99270 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47078 * 59.99523 * 9 7 2 27 27 H 1.08998 * 109.46920 * 299.99955 * 9 7 2 28 28 H 1.09002 * 109.46853 * 59.99552 * 10 9 7 29 29 H 1.09006 * 109.46869 * 299.99843 * 10 9 7 30 30 H 1.08997 * 109.47185 * 59.99724 * 11 10 9 31 31 H 1.09006 * 109.47044 * 299.99713 * 11 10 9 32 32 H 0.96999 * 119.99968 * 0.02562 * 14 12 11 33 33 H 1.09003 * 109.46877 * 55.00160 * 17 15 14 34 34 H 1.09001 * 109.46629 * 174.99696 * 17 15 14 35 35 H 0.96700 * 113.99458 * 180.02562 * 18 17 15 36 36 H 1.08999 * 111.05650 * 34.31250 * 21 19 15 37 37 H 1.09001 * 111.18400 * 270.19432 * 21 19 15 38 38 H 1.08996 * 110.31348 * 204.69266 * 22 21 19 39 39 H 1.09000 * 110.30898 * 82.52016 * 22 21 19 40 40 H 1.09002 * 109.83312 * 117.80151 * 24 23 22 41 41 H 1.08996 * 109.82720 * 238.68562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4592 -6.1326 -0.0007 13 8 3.6517 -5.9111 -0.0002 14 7 2.0099 -7.4033 -0.0009 15 6 2.9619 -8.5168 -0.0009 16 1 3.8379 -8.2461 0.5885 17 6 3.3888 -8.8227 -1.4380 18 8 2.2609 -9.2894 -2.1809 19 6 2.2995 -9.7540 0.6086 20 1 1.4411 -10.0681 0.0148 21 6 3.3228 -10.9148 0.7580 22 6 2.7214 -11.6857 1.9601 23 8 2.1887 -10.6719 2.8272 24 6 1.8881 -9.4917 2.0732 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8895 30 1 0.8537 -5.0446 -0.8903 31 1 0.8531 -5.0451 0.8897 32 1 1.0563 -7.5805 -0.0009 33 1 3.7796 -7.9168 -1.9015 34 1 4.1627 -9.5903 -1.4315 35 1 2.4586 -9.5035 -3.1029 36 1 4.3162 -10.5331 0.9934 37 1 3.3455 -11.5375 -0.1363 38 1 3.4984 -12.2523 2.4732 39 1 1.9267 -12.3513 1.6233 40 1 0.8197 -9.2817 2.1253 41 1 2.4507 -8.6465 2.4696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631898242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:18 Heat of formation + Delta-G solvation = -184.842719 kcal Electronic energy + Delta-G solvation = -20959.551828 eV Core-core repulsion = 17644.376715 eV Total energy + Delta-G solvation = -3315.175113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29755 -40.13881 -38.05281 -36.18269 -35.74708 -34.06657 -33.25418 -30.71697 -29.70107 -28.84180 -25.90834 -24.07985 -23.34071 -22.21807 -21.52736 -21.04270 -18.65354 -18.49133 -17.88289 -17.57094 -17.18367 -16.72311 -16.56967 -16.43027 -15.67162 -15.49381 -15.14226 -14.67705 -14.63529 -14.23081 -14.17382 -13.79666 -13.40006 -13.10366 -13.04158 -12.67644 -12.61047 -12.51170 -12.40062 -12.18264 -11.96649 -11.73101 -11.55666 -11.46491 -11.27064 -11.02737 -10.68616 -10.54670 -10.50986 -10.09750 -8.20520 -6.30595 1.39339 1.40575 1.52161 1.64661 2.13811 2.41762 2.91209 3.12436 3.34278 3.35919 3.67957 3.85161 3.90994 4.16219 4.22821 4.24572 4.26633 4.28808 4.40673 4.47206 4.55262 4.74236 4.77079 4.83134 4.86951 4.94704 4.97301 4.98340 5.11160 5.19055 5.24539 5.46772 5.54668 5.75342 5.86786 6.02132 6.27149 6.54728 6.85052 6.85289 7.26105 7.38127 8.91111 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.003073 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.475704 B = 9109.917502 C = 9440.912639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.081 4.081 11 C -0.132 4.132 12 C 0.519 3.481 13 O -0.582 6.582 14 N -0.711 5.711 15 C 0.156 3.844 16 H 0.084 0.916 17 C 0.071 3.929 18 O -0.575 6.575 19 C -0.112 4.112 20 H 0.108 0.892 21 C -0.141 4.141 22 C 0.045 3.955 23 O -0.411 6.411 24 C 0.052 3.948 25 H 0.265 0.735 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.414 0.586 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.396 0.604 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -26.657 -1.843 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.119 4.119 11 C -0.171 4.171 12 C 0.307 3.693 13 O -0.462 6.462 14 N -0.363 5.363 15 C 0.051 3.949 16 H 0.102 0.898 17 C -0.008 4.008 18 O -0.383 6.383 19 C -0.131 4.131 20 H 0.126 0.874 21 C -0.179 4.179 22 C -0.031 4.031 23 O -0.331 6.331 24 C -0.024 4.024 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.095 -26.332 -1.049 26.670 hybrid contribution 0.186 1.111 -0.723 1.338 sum 4.282 -25.222 -1.773 25.644 Atomic orbital electron populations 1.70071 1.07531 1.27798 1.51598 1.25922 0.95834 1.03116 0.94684 0.85489 0.78629 0.78639 0.78562 1.19667 1.20311 1.19238 1.21699 0.93353 0.92814 1.50715 0.93027 1.19018 0.94213 0.92436 0.95467 1.21149 0.97584 0.92937 1.00265 1.21678 0.98015 0.91851 1.05587 1.21003 0.89377 0.84754 0.74158 1.90659 1.18773 1.85455 1.51337 1.45905 1.11086 1.04338 1.74943 1.21058 0.92933 0.85480 0.95385 0.89759 1.22468 0.88796 0.98070 0.91488 1.86389 1.35582 1.87973 1.28394 1.22831 1.00378 0.94421 0.95471 0.87410 1.23320 0.98617 0.96079 0.99899 1.23580 0.98223 0.90782 0.90509 1.88390 1.84675 1.24701 1.35317 1.23214 1.00855 0.87833 0.90508 0.92654 0.98155 0.98130 0.94082 0.94094 0.87642 0.87511 0.74918 0.95222 0.90454 0.75459 0.90148 0.87442 0.88562 0.90918 0.90586 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -32.52 9.11 25.60 0.23 -32.28 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.60 4.44 30.59 0.14 -3.47 16 11 C -0.13 -4.31 5.70 29.85 0.17 -4.14 16 12 C 0.52 16.17 7.79 87.66 0.68 16.85 16 13 O -0.58 -22.89 15.64 -3.05 -0.05 -22.93 16 14 N -0.71 -15.73 4.71 -442.53 -2.08 -17.81 16 15 C 0.16 3.00 1.74 44.99 0.08 3.08 16 16 H 0.08 1.95 7.56 -2.39 -0.02 1.93 16 17 C 0.07 1.19 6.61 71.98 0.48 1.67 16 18 O -0.58 -8.30 12.73 -148.98 -1.90 -10.20 16 19 C -0.11 -1.65 2.39 -9.48 -0.02 -1.67 16 20 H 0.11 1.50 7.57 -2.39 -0.02 1.48 16 21 C -0.14 -1.59 5.85 32.11 0.19 -1.40 16 22 C 0.04 0.59 7.78 72.65 0.57 1.16 16 23 O -0.41 -8.55 11.36 -148.98 -1.69 -10.24 16 24 C 0.05 0.97 7.10 72.45 0.51 1.48 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 29 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 32 H 0.41 7.23 8.60 -92.71 -0.80 6.44 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.92 7.65 -2.39 -0.02 0.90 16 35 H 0.40 2.68 9.12 -74.06 -0.68 2.01 16 36 H 0.08 0.94 8.03 -2.39 -0.02 0.92 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.21 7.81 -2.39 -0.02 1.19 16 Total: -1.00 -75.28 339.41 -0.23 -75.51 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.45 Total: 11.40 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 3.63 Total: -16.60 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -1.80 Total: -74.43 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -3.64 Total: -43.37 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.28 -0.23 -75.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631898242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.334 kcal (2) G-P(sol) polarization free energy of solvation -75.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds