Wall clock time and date at job start Mon Mar 30 2020 00:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46921 * 120.63059 * 359.72315 * 14 12 11 16 16 C 1.52760 * 109.00903 * 233.58159 * 15 14 12 17 17 C 1.53040 * 109.38219 * 305.58856 * 16 15 14 18 18 O 1.42898 * 109.46440 * 301.22336 * 17 16 15 19 19 C 1.52996 * 109.46272 * 181.25898 * 17 16 15 20 20 O 1.42900 * 109.46904 * 59.93272 * 19 17 16 21 21 C 1.53042 * 109.53627 * 61.23932 * 17 16 15 22 22 C 1.46926 * 120.62707 * 180.02562 * 14 12 11 23 23 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.08996 * 109.58649 * 353.41979 * 15 14 12 31 31 H 1.09004 * 109.58204 * 113.84425 * 15 14 12 32 32 H 1.09000 * 109.56394 * 185.56047 * 16 15 14 33 33 H 1.08995 * 109.36180 * 65.49907 * 16 15 14 34 34 H 0.96708 * 113.99399 * 300.06605 * 18 17 16 35 35 H 1.08996 * 109.47686 * 179.97438 * 19 17 16 36 36 H 1.08998 * 109.47043 * 299.93607 * 19 17 16 37 37 H 0.96702 * 114.00285 * 180.02562 * 20 19 17 38 38 H 1.09008 * 109.49904 * 178.67973 * 21 17 16 39 39 H 1.08998 * 109.49938 * 58.59037 * 21 17 16 40 40 H 1.09005 * 109.58410 * 246.15856 * 22 14 12 41 41 H 1.08998 * 109.58968 * 6.58185 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0538 -4.0574 -0.0015 13 8 5.2657 -4.9792 -0.0005 14 7 7.3789 -4.3036 -0.0029 15 6 8.3459 -3.1975 -0.0112 16 6 9.3164 -3.3938 -1.1744 17 6 9.9510 -4.7831 -1.0774 18 8 10.6341 -4.9085 0.1714 19 6 10.9468 -4.9698 -2.2238 20 8 11.9660 -3.9719 -2.1366 21 6 8.8596 -5.8519 -1.1710 22 6 7.8839 -5.6834 -0.0027 23 1 -0.4851 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6801 -0.8912 26 1 3.6578 -3.1506 -0.8907 27 1 3.6585 -3.1501 0.8892 28 1 5.9156 -2.1223 0.8873 29 1 5.9141 -2.1230 -0.8927 30 1 7.8180 -2.2517 -0.1332 31 1 8.9009 -3.1903 0.9269 32 1 10.0966 -2.6338 -1.1311 33 1 8.7744 -3.3063 -2.1160 34 1 11.3411 -4.2612 0.2996 35 1 11.3992 -5.9590 -2.1547 36 1 10.4260 -4.8749 -3.1766 37 1 12.6335 -4.0294 -2.8340 38 1 9.3145 -6.8414 -1.1255 39 1 8.3219 -5.7413 -2.1127 40 1 8.4003 -5.8833 0.9362 41 1 7.0513 -6.3772 -0.1191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632365667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:30 Heat of formation + Delta-G solvation = -181.433637 kcal Electronic energy + Delta-G solvation = -21346.044264 eV Core-core repulsion = 18031.016980 eV Total energy + Delta-G solvation = -3315.027284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45898 -39.82365 -37.31854 -36.21611 -36.09938 -34.21471 -33.06694 -32.14881 -30.25583 -28.30143 -25.79782 -24.41745 -23.82966 -22.12751 -21.34226 -20.01553 -18.85709 -18.36678 -18.12554 -17.44386 -16.86361 -16.71802 -16.22146 -16.00834 -15.72493 -15.52463 -14.98985 -14.73402 -14.58965 -14.48794 -13.91208 -13.66643 -13.55947 -13.23731 -13.18617 -12.82793 -12.57816 -12.50048 -12.28982 -12.18590 -11.78139 -11.71136 -11.56381 -11.49218 -11.31938 -10.96137 -10.85599 -10.74526 -10.66094 -9.65695 -8.27233 -6.33021 1.38964 1.42846 1.54985 1.61872 1.99919 2.39868 3.07825 3.13906 3.27237 3.55742 3.71257 3.85508 4.03018 4.10967 4.14892 4.22422 4.32534 4.34941 4.47730 4.54543 4.67244 4.69551 4.77119 4.82441 4.89114 4.89555 4.93580 4.98185 5.04107 5.11778 5.27446 5.52663 5.59589 5.60011 5.68294 6.30566 6.38849 6.75633 6.78494 6.90576 7.18164 7.31372 8.90574 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.003528 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.449823 B = 7935.197966 C = 8517.646320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.004 4.004 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.008 4.008 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.511 3.489 13 O -0.589 6.589 14 N -0.610 5.610 15 C 0.104 3.896 16 C -0.151 4.151 17 C 0.138 3.862 18 O -0.564 6.564 19 C 0.055 3.945 20 O -0.584 6.584 21 C -0.116 4.116 22 C 0.115 3.885 23 H 0.266 0.734 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.391 0.609 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.529 -6.554 -4.739 32.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.037 0.963 9 C -0.045 4.045 10 C -0.118 4.118 11 C -0.169 4.169 12 C 0.301 3.699 13 O -0.470 6.470 14 N -0.343 5.343 15 C -0.017 4.017 16 C -0.190 4.190 17 C 0.097 3.903 18 O -0.372 6.372 19 C -0.023 4.023 20 O -0.393 6.393 21 C -0.154 4.154 22 C -0.008 4.008 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.240 0.760 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 30.228 -7.255 -4.141 31.361 hybrid contribution 0.027 0.527 -0.582 0.786 sum 30.256 -6.727 -4.723 31.352 Atomic orbital electron populations 1.70110 1.08724 1.28309 1.52712 1.26210 0.95752 1.04170 0.93823 0.85487 0.79665 0.76970 0.79450 1.18774 1.21202 1.15846 1.21558 0.92707 0.92847 1.50733 0.96312 1.19537 0.93472 0.94187 0.97339 1.21044 0.93310 0.97235 1.00222 1.21745 0.96369 0.92670 1.06072 1.21220 0.81950 0.92186 0.74555 1.90662 1.56267 1.48070 1.51952 1.48235 1.05058 1.08176 1.72844 1.21839 0.90534 0.89457 0.99894 1.22419 0.99426 0.98147 0.98987 1.21142 0.90656 0.94663 0.83826 1.86476 1.53061 1.60754 1.36948 1.22792 0.89716 0.91618 0.98155 1.86314 1.40818 1.54957 1.57190 1.21838 0.95080 0.99656 0.98860 1.21436 0.96994 0.82944 0.99377 0.92485 0.95138 0.95146 0.94511 0.94665 0.86823 0.86548 0.88083 0.90057 0.88178 0.90789 0.75966 0.92305 0.92022 0.74898 0.88764 0.89973 0.90802 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.35 13.96 21.45 0.30 -62.05 16 2 C 0.00 -0.23 5.47 84.65 0.46 0.24 16 3 Si 0.96 44.10 27.47 68.60 1.88 45.99 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 7 C -0.54 -32.89 9.66 25.60 0.25 -32.65 16 8 H 0.02 1.28 7.99 -2.91 -0.02 1.26 16 9 C -0.01 -0.38 4.04 29.84 0.12 -0.26 16 10 C -0.08 -3.43 4.44 30.59 0.14 -3.30 16 11 C -0.13 -3.92 4.05 29.85 0.12 -3.79 16 12 C 0.51 16.56 7.70 87.66 0.67 17.24 16 13 O -0.59 -24.86 15.39 -3.03 -0.05 -24.90 16 14 N -0.61 -14.71 2.98 -819.83 -2.44 -17.16 16 15 C 0.10 1.74 6.08 86.22 0.52 2.26 16 16 C -0.15 -2.02 4.94 30.53 0.15 -1.87 16 17 C 0.14 1.84 0.79 -10.77 -0.01 1.84 16 18 O -0.56 -8.32 11.71 -139.78 -1.64 -9.96 16 19 C 0.06 0.53 6.17 71.98 0.44 0.97 16 20 O -0.58 -4.96 12.45 -139.78 -1.74 -6.70 16 21 C -0.12 -1.86 5.11 30.66 0.16 -1.70 16 22 C 0.11 2.59 6.19 86.35 0.53 3.12 16 23 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 24 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 25 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 26 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 27 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 28 H 0.11 2.89 7.95 -2.39 -0.02 2.87 16 29 H 0.12 2.87 7.68 -2.39 -0.02 2.85 16 30 H 0.10 1.48 5.93 -2.39 -0.01 1.47 16 31 H 0.08 1.26 7.81 -2.38 -0.02 1.24 16 32 H 0.10 1.13 7.64 -2.39 -0.02 1.11 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.39 3.98 8.57 -74.05 -0.63 3.35 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.40 0.27 9.12 -74.06 -0.68 -0.41 16 38 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.64 7.81 -2.38 -0.02 1.63 16 41 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 Total: -1.00 -81.08 326.85 -0.45 -81.53 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.33 Total: 11.16 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 3.56 Total: -17.91 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.14 Total: -79.21 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -3.42 Total: -41.56 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -81.08 -0.45 -81.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632365667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.899 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds