Wall clock time and date at job start Mon Mar 30 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46907 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00569 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99786 * 180.02562 * 12 11 10 15 15 C 1.46928 * 120.63004 * 0.02562 * 14 12 11 16 16 C 1.53195 * 108.77668 * 126.36679 * 15 14 12 17 17 C 1.53047 * 109.30757 * 54.63469 * 16 15 14 18 18 H 1.09007 * 109.45405 * 178.61353 * 17 16 15 19 19 O 1.42898 * 109.46020 * 58.64393 * 17 16 15 20 20 C 1.53039 * 109.53820 * 298.63499 * 17 16 15 21 21 H 1.09002 * 109.49657 * 301.41578 * 20 17 16 22 22 C 1.52998 * 109.49571 * 181.35349 * 20 17 16 23 23 O 1.42902 * 109.47292 * 174.99994 * 22 20 17 24 24 C 1.46921 * 120.63045 * 179.72321 * 14 12 11 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 27 27 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 28 28 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 29 29 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 30 30 H 1.08999 * 109.46783 * 300.00124 * 11 10 9 31 31 H 1.09000 * 109.46608 * 60.00231 * 11 10 9 32 32 H 1.08993 * 109.58788 * 246.15662 * 15 14 12 33 33 H 1.09001 * 109.58675 * 6.58254 * 15 14 12 34 34 H 1.08991 * 109.49905 * 174.58696 * 16 15 14 35 35 H 1.08998 * 109.49766 * 294.65430 * 16 15 14 36 36 H 0.96703 * 113.99657 * 59.99843 * 19 17 16 37 37 H 1.08998 * 109.46993 * 295.00156 * 22 20 17 38 38 H 1.09001 * 109.47427 * 54.99760 * 22 20 17 39 39 H 0.96698 * 113.99612 * 179.97438 * 23 22 20 40 40 H 1.09001 * 109.58983 * 353.41771 * 24 14 12 41 41 H 1.08996 * 109.58879 * 113.84839 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 6 5.5516 -2.6366 0.0125 12 6 6.0538 -4.0574 0.0193 13 8 5.2658 -4.9792 0.0232 14 7 7.3789 -4.3037 0.0209 15 6 8.3460 -3.1976 0.0167 16 6 9.3175 -3.3875 1.1859 17 6 9.9518 -4.7774 1.0961 18 1 10.6620 -4.9058 1.9130 19 8 10.6337 -4.9096 -0.1527 20 6 8.8605 -5.8456 1.1964 21 1 8.3235 -5.7297 2.1379 22 6 9.4991 -7.2348 1.1404 23 8 8.4948 -8.2295 1.3506 24 6 7.8838 -5.6834 0.0336 25 1 -0.4850 0.8401 -0.0041 26 1 3.8752 -0.6844 -0.8859 27 1 3.8746 -0.6762 0.8940 28 1 3.6579 -3.1467 0.9046 29 1 3.6585 -3.1541 -0.8754 30 1 5.9149 -2.1266 -0.8797 31 1 5.9149 -2.1190 0.9003 32 1 8.8994 -3.1996 -0.9222 33 1 7.8184 -2.2505 0.1303 34 1 10.0975 -2.6278 1.1379 35 1 8.7762 -3.2943 2.1275 36 1 11.3413 -4.2638 -0.2848 37 1 9.9594 -7.3839 0.1637 38 1 10.2597 -7.3167 1.9168 39 1 8.8290 -9.1366 1.3278 40 1 7.0515 -6.3761 0.1582 41 1 8.3989 -5.8927 -0.9040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638198570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:56 Heat of formation + Delta-G solvation = -151.982130 kcal Electronic energy + Delta-G solvation = -21353.123750 eV Core-core repulsion = 18039.373579 eV Total energy + Delta-G solvation = -3313.750171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45385 -38.58057 -36.91498 -35.49959 -34.31544 -32.66306 -31.90389 -31.36387 -28.59700 -26.10962 -25.43077 -23.29635 -22.58562 -20.64741 -20.00605 -18.91138 -17.66302 -17.33345 -16.92902 -16.62631 -15.93396 -15.56746 -15.25527 -14.74428 -14.58865 -14.32692 -14.11624 -13.67181 -13.24416 -12.93003 -12.87797 -12.58270 -12.34036 -12.00583 -11.88373 -11.63617 -11.53608 -11.22638 -10.93811 -10.77555 -10.74861 -10.37829 -10.21933 -9.94508 -9.76222 -9.65124 -9.33226 -9.09161 -8.58765 -8.48183 -5.97745 -3.95235 2.90429 3.05428 3.33291 3.40062 3.43078 3.73410 3.86065 4.35729 4.47870 4.49493 4.62679 4.65662 4.92439 4.96469 5.10105 5.14065 5.17716 5.31173 5.35444 5.41916 5.43475 5.56150 5.59688 5.64825 5.72001 5.93103 6.04556 6.15674 6.53534 6.60950 6.74876 6.96512 7.20989 7.35587 7.41131 7.49617 7.52232 7.85923 8.44144 8.62925 9.09487 9.64289 11.16058 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.003603 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.096733 B = 7769.888717 C = 8416.422078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.514 3.486 13 O -0.532 6.532 14 N -0.621 5.621 15 C 0.112 3.888 16 C -0.169 4.169 17 C 0.112 3.888 18 H 0.059 0.941 19 O -0.561 6.561 20 C -0.095 4.095 21 H 0.092 0.908 22 C 0.087 3.913 23 O -0.571 6.571 24 C 0.126 3.874 25 H 0.262 0.738 26 H 0.010 0.990 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.378 0.622 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.379 0.621 40 H 0.097 0.903 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.994 -9.470 2.351 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.179 4.179 12 C 0.303 3.697 13 O -0.408 6.408 14 N -0.356 5.356 15 C -0.012 4.012 16 C -0.207 4.207 17 C 0.053 3.947 18 H 0.077 0.923 19 O -0.367 6.367 20 C -0.114 4.114 21 H 0.110 0.890 22 C 0.009 3.991 23 O -0.376 6.376 24 C 0.004 3.996 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.225 0.775 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.226 0.774 40 H 0.116 0.884 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 26.569 -9.803 2.321 28.415 hybrid contribution 1.334 1.031 0.124 1.691 sum 27.903 -8.772 2.445 29.352 Atomic orbital electron populations 1.69929 1.06304 1.26749 1.51442 1.25060 0.94743 0.99136 0.94750 0.86755 0.80294 0.83657 0.78398 1.20357 1.21468 1.19076 1.21178 0.89554 0.94557 1.50292 0.90919 1.19602 0.97310 0.92193 0.96021 1.21280 0.89250 0.99489 1.02578 1.21887 1.00624 0.92106 1.03330 1.21174 0.81009 0.92615 0.74866 1.90688 1.54574 1.46764 1.48734 1.48202 1.05808 1.06672 1.74952 1.21608 0.90852 0.90433 0.98277 1.22631 1.00070 0.97486 1.00557 1.21691 0.92794 0.93961 0.86216 0.92345 1.86536 1.52461 1.59674 1.38019 1.21453 0.95846 0.92832 1.01279 0.89002 1.22055 0.89624 0.87509 0.99928 1.86533 1.37080 1.18297 1.95712 1.21297 0.97600 0.83676 0.97074 0.92820 0.97128 0.96721 0.92078 0.92077 0.89476 0.89547 0.90945 0.89175 0.90106 0.90181 0.77506 0.92588 0.93728 0.77369 0.88447 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.72 13.96 55.43 0.77 -27.95 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -15.39 9.66 -34.44 -0.33 -15.72 16 8 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 10 C -0.09 -1.90 4.44 -26.73 -0.12 -2.02 16 11 C -0.14 -2.29 4.05 -27.88 -0.11 -2.41 16 12 C 0.51 8.78 7.70 -10.98 -0.08 8.69 16 13 O -0.53 -11.35 15.40 5.56 0.09 -11.27 16 14 N -0.62 -8.23 2.98 -173.06 -0.52 -8.75 16 15 C 0.11 1.04 6.10 -3.71 -0.02 1.02 16 16 C -0.17 -1.17 5.80 -26.61 -0.15 -1.33 16 17 C 0.11 0.80 3.19 -26.69 -0.09 0.71 16 18 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 19 O -0.56 -3.79 11.53 -35.23 -0.41 -4.20 16 20 C -0.09 -0.94 2.39 -90.74 -0.22 -1.15 16 21 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 22 C 0.09 0.74 6.23 37.16 0.23 0.97 16 23 O -0.57 -5.60 13.30 -35.23 -0.47 -6.07 16 24 C 0.13 1.61 5.29 -3.96 -0.02 1.59 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.01 0.25 7.58 -51.93 -0.39 -0.15 16 27 H 0.01 0.35 7.19 -51.93 -0.37 -0.03 16 28 H 0.06 1.40 8.10 -51.93 -0.42 0.97 16 29 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 30 H 0.09 1.27 7.94 -51.93 -0.41 0.85 16 31 H 0.09 1.25 7.69 -51.93 -0.40 0.85 16 32 H 0.07 0.62 7.81 -51.93 -0.41 0.21 16 33 H 0.09 0.80 5.93 -51.93 -0.31 0.49 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.38 1.03 9.08 45.56 0.41 1.44 16 37 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.38 1.88 9.12 45.56 0.42 2.29 16 40 H 0.10 1.54 6.84 -51.93 -0.36 1.19 16 41 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -37.21 327.83 -6.56 -43.77 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.17 Total: 0.50 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.13 Total: -8.28 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.26 Total: -36.69 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.79 Total: -21.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.21 -6.56 -43.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638198570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.215 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds