Wall clock time and date at job start Mon Mar 30 2020 00:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46907 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00569 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99786 * 180.02562 * 12 11 10 15 15 C 1.46928 * 120.63004 * 0.02562 * 14 12 11 16 16 C 1.53195 * 108.77668 * 126.36679 * 15 14 12 17 17 C 1.53047 * 109.30757 * 54.63469 * 16 15 14 18 18 H 1.09007 * 109.45405 * 178.61353 * 17 16 15 19 19 O 1.42898 * 109.46020 * 58.64393 * 17 16 15 20 20 C 1.53039 * 109.53820 * 298.63499 * 17 16 15 21 21 H 1.09002 * 109.49657 * 301.41578 * 20 17 16 22 22 C 1.52998 * 109.49571 * 181.35349 * 20 17 16 23 23 O 1.42902 * 109.47292 * 174.99994 * 22 20 17 24 24 C 1.46921 * 120.63045 * 179.72321 * 14 12 11 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 27 27 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 28 28 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 29 29 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 30 30 H 1.08999 * 109.46783 * 300.00124 * 11 10 9 31 31 H 1.09000 * 109.46608 * 60.00231 * 11 10 9 32 32 H 1.08993 * 109.58788 * 246.15662 * 15 14 12 33 33 H 1.09001 * 109.58675 * 6.58254 * 15 14 12 34 34 H 1.08991 * 109.49905 * 174.58696 * 16 15 14 35 35 H 1.08998 * 109.49766 * 294.65430 * 16 15 14 36 36 H 0.96703 * 113.99657 * 59.99843 * 19 17 16 37 37 H 1.08998 * 109.46993 * 295.00156 * 22 20 17 38 38 H 1.09001 * 109.47427 * 54.99760 * 22 20 17 39 39 H 0.96698 * 113.99612 * 179.97438 * 23 22 20 40 40 H 1.09001 * 109.58983 * 353.41771 * 24 14 12 41 41 H 1.08996 * 109.58879 * 113.84839 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 6 5.5516 -2.6366 0.0125 12 6 6.0538 -4.0574 0.0193 13 8 5.2658 -4.9792 0.0232 14 7 7.3789 -4.3037 0.0209 15 6 8.3460 -3.1976 0.0167 16 6 9.3175 -3.3875 1.1859 17 6 9.9518 -4.7774 1.0961 18 1 10.6620 -4.9058 1.9130 19 8 10.6337 -4.9096 -0.1527 20 6 8.8605 -5.8456 1.1964 21 1 8.3235 -5.7297 2.1379 22 6 9.4991 -7.2348 1.1404 23 8 8.4948 -8.2295 1.3506 24 6 7.8838 -5.6834 0.0336 25 1 -0.4850 0.8401 -0.0041 26 1 3.8752 -0.6844 -0.8859 27 1 3.8746 -0.6762 0.8940 28 1 3.6579 -3.1467 0.9046 29 1 3.6585 -3.1541 -0.8754 30 1 5.9149 -2.1266 -0.8797 31 1 5.9149 -2.1190 0.9003 32 1 8.8994 -3.1996 -0.9222 33 1 7.8184 -2.2505 0.1303 34 1 10.0975 -2.6278 1.1379 35 1 8.7762 -3.2943 2.1275 36 1 11.3413 -4.2638 -0.2848 37 1 9.9594 -7.3839 0.1637 38 1 10.2597 -7.3167 1.9168 39 1 8.8290 -9.1366 1.3278 40 1 7.0515 -6.3761 0.1582 41 1 8.3989 -5.8927 -0.9040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638198570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:55 Heat of formation + Delta-G solvation = -183.723930 kcal Electronic energy + Delta-G solvation = -21354.500177 eV Core-core repulsion = 18039.373579 eV Total energy + Delta-G solvation = -3315.126599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44800 -39.57626 -37.59039 -36.39628 -36.15229 -34.22749 -33.28135 -32.08874 -30.32514 -27.22083 -26.33151 -24.95263 -23.27583 -22.12829 -21.19777 -20.02585 -18.84511 -18.36484 -18.09041 -17.85504 -16.99752 -16.82767 -16.26599 -15.87286 -15.56792 -15.48990 -15.21702 -14.76690 -14.65343 -14.41818 -13.93594 -13.88276 -13.62302 -13.24171 -13.02135 -12.74826 -12.60063 -12.47244 -12.24212 -11.99268 -11.77932 -11.70957 -11.51763 -11.50493 -11.32223 -11.01844 -10.81935 -10.74765 -10.69125 -9.63056 -8.27326 -6.33428 1.38853 1.43172 1.55231 1.60974 1.99185 2.39984 3.07562 3.17787 3.35946 3.59922 3.74756 3.88582 4.02941 4.06095 4.13167 4.21189 4.24104 4.40810 4.52813 4.55388 4.60151 4.65693 4.75789 4.81390 4.88389 4.91404 4.94010 5.02610 5.05023 5.10608 5.28979 5.51069 5.58015 5.58888 5.67836 6.30422 6.39745 6.75141 6.89714 6.98645 7.18272 7.30862 8.90589 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.003603 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.096733 B = 7769.888717 C = 8416.422078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.234 1.234 7 C -0.542 4.542 8 H 0.016 0.984 9 C -0.007 4.007 10 C -0.081 4.081 11 C -0.126 4.126 12 C 0.507 3.493 13 O -0.593 6.593 14 N -0.612 5.612 15 C 0.100 3.900 16 C -0.164 4.164 17 C 0.120 3.880 18 H 0.084 0.916 19 O -0.574 6.574 20 C -0.096 4.096 21 H 0.074 0.926 22 C 0.088 3.912 23 O -0.600 6.600 24 C 0.128 3.872 25 H 0.267 0.733 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.055 0.945 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.618 -6.950 2.643 33.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.156 1.156 7 C -0.580 4.580 8 H 0.035 0.965 9 C -0.044 4.044 10 C -0.120 4.120 11 C -0.165 4.165 12 C 0.297 3.703 13 O -0.473 6.473 14 N -0.345 5.345 15 C -0.022 4.022 16 C -0.202 4.202 17 C 0.061 3.939 18 H 0.101 0.899 19 O -0.383 6.383 20 C -0.116 4.116 21 H 0.093 0.907 22 C 0.010 3.990 23 O -0.408 6.408 24 C 0.005 3.995 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.074 0.926 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 31.284 -7.292 2.611 32.229 hybrid contribution -0.152 0.114 -0.002 0.190 sum 31.132 -7.178 2.609 32.055 Atomic orbital electron populations 1.70117 1.08770 1.28334 1.52655 1.26242 0.95778 1.04254 0.93758 0.85460 0.79679 0.76783 0.79472 1.18806 1.21178 1.15650 1.21562 0.92749 0.92824 1.50860 0.96507 1.19527 0.93436 0.94004 0.97429 1.21060 0.93451 0.97363 1.00082 1.21735 0.96257 0.92327 1.06211 1.21342 0.82066 0.92308 0.74616 1.90671 1.56461 1.48272 1.51900 1.48268 1.05215 1.08144 1.72824 1.22016 0.90647 0.89168 1.00330 1.22647 1.00258 0.98420 0.98864 1.21584 0.92308 0.92687 0.87294 0.89862 1.86499 1.53312 1.60784 1.37689 1.21478 0.96223 0.95153 0.98702 0.90714 1.22114 0.89511 0.86461 1.00865 1.86500 1.38580 1.19962 1.95807 1.21238 0.96786 0.82721 0.98729 0.92475 0.95096 0.94916 0.94771 0.94792 0.86469 0.86445 0.89474 0.88066 0.86428 0.90879 0.75167 0.92365 0.91333 0.75266 0.92617 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.70 13.96 21.45 0.30 -62.40 16 2 C 0.00 -0.28 5.47 84.66 0.46 0.19 16 3 Si 0.96 44.12 27.47 68.60 1.88 46.00 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.23 -9.43 6.54 99.48 0.65 -8.78 16 7 C -0.54 -33.29 9.66 25.60 0.25 -33.04 16 8 H 0.02 1.16 7.99 -2.91 -0.02 1.14 16 9 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 10 C -0.08 -3.58 4.44 30.59 0.14 -3.44 16 11 C -0.13 -3.90 4.05 29.85 0.12 -3.78 16 12 C 0.51 17.38 7.70 87.66 0.67 18.05 16 13 O -0.59 -26.87 15.40 -3.01 -0.05 -26.92 16 14 N -0.61 -15.54 2.98 -819.83 -2.44 -17.98 16 15 C 0.10 1.49 6.10 86.36 0.53 2.02 16 16 C -0.16 -1.56 5.80 30.68 0.18 -1.38 16 17 C 0.12 1.27 3.19 30.62 0.10 1.37 16 18 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 19 O -0.57 -5.51 11.53 -148.98 -1.72 -7.22 16 20 C -0.10 -1.78 2.39 -10.87 -0.03 -1.81 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 C 0.09 1.38 6.23 71.98 0.45 1.83 16 23 O -0.60 -11.81 13.30 -148.98 -1.98 -13.79 16 24 C 0.13 3.30 5.29 86.21 0.46 3.75 16 25 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 26 H 0.03 1.36 7.58 -2.38 -0.02 1.34 16 27 H 0.03 1.45 7.19 -2.39 -0.02 1.44 16 28 H 0.03 1.64 8.10 -2.38 -0.02 1.62 16 29 H 0.03 1.63 8.10 -2.38 -0.02 1.61 16 30 H 0.12 2.96 7.94 -2.39 -0.02 2.94 16 31 H 0.12 2.94 7.69 -2.39 -0.02 2.92 16 32 H 0.09 1.11 7.81 -2.39 -0.02 1.09 16 33 H 0.10 1.31 5.93 -2.39 -0.01 1.30 16 34 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.40 0.26 9.08 -74.06 -0.67 -0.42 16 37 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.40 3.84 9.12 -74.06 -0.68 3.16 16 40 H 0.06 1.90 6.84 -2.39 -0.02 1.88 16 41 H 0.07 1.76 7.81 -2.39 -0.02 1.74 16 Total: -1.00 -87.51 327.83 -0.93 -88.44 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -0.37 Total: 10.31 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 3.44 Total: -16.44 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.14 Total: -80.38 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -3.75 Total: -47.93 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -87.51 -0.93 -88.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638198570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.284 kcal (2) G-P(sol) polarization free energy of solvation -87.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds