Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47037 * 60.00067 * 9 7 5 11 11 H 1.48495 * 109.46817 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46854 * 299.99817 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 O 1.42905 * 110.43356 * 323.91162 * 17 15 14 19 19 C 1.54810 * 110.48934 * 201.22438 * 17 15 14 20 20 C 1.55001 * 102.08719 * 220.44165 * 19 17 15 21 21 O 1.44376 * 103.49400 * 37.02776 * 20 19 17 22 22 C 1.43751 * 106.97183 * 319.93580 * 21 20 19 23 23 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 25 25 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 28 28 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 29 29 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 31 31 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 33 33 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 35 35 H 0.96704 * 113.99988 * 59.29509 * 18 17 15 36 36 H 1.09000 * 110.90871 * 338.63996 * 19 17 15 37 37 H 1.08996 * 110.90619 * 102.24725 * 19 17 15 38 38 H 1.08998 * 110.61893 * 278.51871 * 20 19 17 39 39 H 1.09001 * 110.74645 * 155.58862 * 20 19 17 40 40 H 1.09005 * 109.87904 * 267.09401 * 22 21 20 41 41 H 1.09004 * 110.00292 * 146.00870 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7439 1.7995 -5.2567 11 1 1.7448 -0.3000 -6.4697 12 1 -0.2362 0.3994 -5.2577 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 8 1.3333 1.6250 4.6864 19 6 2.2461 -0.1334 6.1253 20 6 1.1900 -0.2993 7.2476 21 8 0.0783 -0.9275 6.5739 22 6 -0.0341 -0.3073 5.2819 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2493 31 1 2.8622 -1.8818 -4.7337 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9939 0.7579 2.3564 35 1 0.7717 1.8985 3.9482 36 1 2.7907 -1.0635 5.9629 37 1 2.9319 0.6824 6.3540 38 1 0.8979 0.6721 7.6465 39 1 1.5692 -0.9412 8.0428 40 1 -0.7378 0.5238 5.3297 41 1 -0.3720 -1.0371 4.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638349547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = -145.077359 kcal Electronic energy + Delta-G solvation = -21766.518539 eV Core-core repulsion = 18453.067781 eV Total energy + Delta-G solvation = -3313.450758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89994 -38.81315 -37.14835 -36.56199 -33.70072 -32.13240 -31.37621 -29.37124 -27.20718 -26.60537 -26.42352 -23.90717 -23.08147 -22.02883 -20.22787 -19.23482 -17.93939 -16.98253 -16.40009 -16.31856 -15.78948 -15.53810 -15.02045 -14.61286 -14.44670 -14.16186 -13.82118 -13.39878 -13.23619 -13.01010 -12.83392 -12.32798 -12.12768 -12.09422 -11.81068 -11.63385 -11.25301 -11.06527 -10.93091 -10.89516 -10.69877 -10.49357 -10.33262 -10.13736 -9.96058 -9.68433 -9.21817 -8.99489 -8.93324 -8.40122 -6.04120 -4.06069 2.42823 3.04411 3.28989 3.34852 3.35728 3.50282 3.76478 4.01327 4.41167 4.48554 4.57556 4.81954 4.94251 5.20291 5.29641 5.31099 5.37857 5.43786 5.49818 5.52308 5.64207 5.81986 6.05342 6.10858 6.16891 6.28492 6.38624 6.44037 6.54361 6.62935 6.96508 6.96789 6.99534 7.03950 7.50235 7.58130 7.69620 7.93639 8.13029 8.35093 8.98374 9.57398 11.07238 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.003665 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.523881 B = 7637.642811 C = 7787.223716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.126 3.874 14 N -0.715 5.715 15 C 0.494 3.506 16 O -0.528 6.528 17 C 0.082 3.918 18 O -0.538 6.538 19 C -0.135 4.135 20 C 0.048 3.952 21 O -0.368 6.368 22 C 0.032 3.968 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.379 0.621 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 6.040 17.966 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.367 5.367 15 C 0.278 3.722 16 O -0.404 6.404 17 C 0.038 3.962 18 O -0.344 6.344 19 C -0.173 4.173 20 C -0.028 4.028 21 O -0.286 6.286 22 C -0.046 4.046 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.228 0.772 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.739 5.031 18.480 19.515 hybrid contribution -0.800 1.009 -1.693 2.127 sum -4.539 6.040 16.788 18.410 Atomic orbital electron populations 1.21774 0.95218 1.01246 1.00227 1.20928 0.95488 0.95932 0.95002 1.21765 1.00678 0.95764 1.00243 1.19084 0.96394 0.95222 0.89392 1.21129 1.31418 1.12145 0.90505 0.92291 1.25013 0.95255 0.95055 0.99103 1.69950 1.36766 1.22978 1.23636 0.86702 0.79144 0.79771 0.82635 1.20306 1.21369 1.20300 1.21715 0.99170 0.96071 0.82638 1.46187 1.52925 1.31594 1.05996 1.20827 0.81180 0.85267 0.84968 1.90716 1.37243 1.26129 1.86355 1.22886 0.96814 0.81682 0.94847 1.86667 1.72081 1.19779 1.55902 1.23152 0.98189 1.04733 0.91213 1.23625 0.85432 0.98415 0.95329 1.88913 1.51597 1.60781 1.27327 1.23820 0.94806 0.99012 0.86913 0.95433 0.91246 0.93263 0.93272 0.91300 0.95320 0.96311 0.96314 0.92918 0.91535 0.91527 0.76956 0.77181 0.87121 0.88551 0.91588 0.88211 0.90407 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 2 C -0.07 -1.32 0.54 -154.50 -0.08 -1.40 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.82 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.13 2.13 4.56 -4.04 -0.02 2.11 16 14 N -0.71 -9.54 4.88 -60.30 -0.29 -9.83 16 15 C 0.49 7.05 6.60 -10.98 -0.07 6.98 16 16 O -0.53 -9.60 15.57 5.55 0.09 -9.51 16 17 C 0.08 0.92 1.33 -90.24 -0.12 0.79 16 18 O -0.54 -5.17 12.90 -35.23 -0.45 -5.62 16 19 C -0.14 -1.44 6.39 -24.72 -0.16 -1.60 16 20 C 0.05 0.45 7.72 38.21 0.29 0.74 16 21 O -0.37 -4.35 11.52 -35.23 -0.41 -4.76 16 22 C 0.03 0.33 7.18 37.73 0.27 0.61 16 23 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 24 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 28 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.39 4.15 4.76 -40.82 -0.19 3.96 16 35 H 0.38 2.31 7.70 45.56 0.35 2.66 16 36 H 0.11 1.35 6.82 -51.93 -0.35 1.00 16 37 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16 41 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -31.78 325.68 -5.85 -37.63 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.64 Total: 3.42 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 0.24 Total: -6.73 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.44 Total: -35.17 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.77 Total: -19.89 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.78 -5.85 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638349547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.450 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds