Wall clock time and date at job start Mon Mar 30 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47037 * 60.00067 * 9 7 5 11 11 H 1.48495 * 109.46817 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46854 * 299.99817 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 O 1.42905 * 110.43356 * 323.91162 * 17 15 14 19 19 C 1.54810 * 110.48934 * 201.22438 * 17 15 14 20 20 C 1.55001 * 102.08719 * 220.44165 * 19 17 15 21 21 O 1.44376 * 103.49400 * 37.02776 * 20 19 17 22 22 C 1.43751 * 106.97183 * 319.93580 * 21 20 19 23 23 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 25 25 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 28 28 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 29 29 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 31 31 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 33 33 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 35 35 H 0.96704 * 113.99988 * 59.29509 * 18 17 15 36 36 H 1.09000 * 110.90871 * 338.63996 * 19 17 15 37 37 H 1.08996 * 110.90619 * 102.24725 * 19 17 15 38 38 H 1.08998 * 110.61893 * 278.51871 * 20 19 17 39 39 H 1.09001 * 110.74645 * 155.58862 * 20 19 17 40 40 H 1.09005 * 109.87904 * 267.09401 * 22 21 20 41 41 H 1.09004 * 110.00292 * 146.00870 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7439 1.7995 -5.2567 11 1 1.7448 -0.3000 -6.4697 12 1 -0.2362 0.3994 -5.2577 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 8 1.3333 1.6250 4.6864 19 6 2.2461 -0.1334 6.1253 20 6 1.1900 -0.2993 7.2476 21 8 0.0783 -0.9275 6.5739 22 6 -0.0341 -0.3073 5.2819 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2493 31 1 2.8622 -1.8818 -4.7337 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9939 0.7579 2.3564 35 1 0.7717 1.8985 3.9482 36 1 2.7907 -1.0635 5.9629 37 1 2.9319 0.6824 6.3540 38 1 0.8979 0.6721 7.6465 39 1 1.5692 -0.9412 8.0428 40 1 -0.7378 0.5238 5.3297 41 1 -0.3720 -1.0371 4.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638349547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:22 Heat of formation + Delta-G solvation = -170.115619 kcal Electronic energy + Delta-G solvation = -21767.604279 eV Core-core repulsion = 18453.067781 eV Total energy + Delta-G solvation = -3314.536498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89626 -39.90371 -38.57842 -37.39171 -35.27693 -33.92494 -32.20876 -30.22318 -29.08717 -27.96922 -27.75936 -25.29018 -24.31750 -23.13062 -21.30083 -20.36738 -19.25819 -18.37631 -17.84989 -17.40310 -16.80926 -16.46694 -16.39434 -16.20108 -15.57324 -15.23341 -15.11181 -14.73702 -14.42734 -14.34615 -13.94412 -13.83111 -13.75365 -13.05021 -12.84558 -12.75881 -12.65379 -12.59824 -12.37608 -12.33442 -12.24115 -12.01963 -11.74891 -11.55386 -11.16017 -10.93079 -10.86085 -10.56043 -10.51071 -10.21648 -8.14308 -6.22454 1.31853 1.43031 1.44866 1.52065 1.91755 2.44464 2.74025 2.99768 3.13713 3.20336 3.60183 3.75154 3.93610 4.04755 4.05680 4.19961 4.23137 4.46453 4.56328 4.65471 4.68460 4.73813 4.75494 4.78541 4.94582 4.99264 5.07394 5.12039 5.30432 5.42661 5.50419 5.52613 5.55480 5.70182 5.79267 5.89273 6.22788 6.30620 6.55365 6.92893 7.02810 7.45685 8.98032 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.003665 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.523881 B = 7637.642811 C = 7787.223716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.515 4.515 6 H 0.075 0.925 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.140 3.860 14 N -0.699 5.699 15 C 0.491 3.509 16 O -0.573 6.573 17 C 0.095 3.905 18 O -0.536 6.536 19 C -0.141 4.141 20 C 0.051 3.949 21 O -0.391 6.391 22 C 0.033 3.967 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.073 0.927 29 H -0.016 1.016 30 H -0.015 1.015 31 H 0.259 0.741 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.413 0.587 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 8.765 19.289 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.553 4.553 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.190 1.190 13 C 0.016 3.984 14 N -0.353 5.353 15 C 0.277 3.723 16 O -0.452 6.452 17 C 0.050 3.950 18 O -0.345 6.345 19 C -0.178 4.178 20 C -0.025 4.025 21 O -0.310 6.310 22 C -0.045 4.045 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.003 0.997 30 H 0.004 0.996 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.252 0.748 35 H 0.248 0.752 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.691 7.811 19.809 22.041 hybrid contribution -0.169 0.143 -2.063 2.075 sum -5.860 7.955 17.746 20.311 Atomic orbital electron populations 1.21720 0.93268 1.01107 1.01940 1.20719 0.96923 0.96325 0.92523 1.21711 0.99874 0.94516 1.01900 1.18973 0.94220 0.94221 0.92423 1.21572 1.30518 1.12151 0.91012 0.90736 1.25956 0.95641 0.95837 1.02768 1.70115 1.38759 1.25026 1.24166 0.85600 0.79008 0.78755 0.78288 1.19106 1.21868 1.19037 1.21280 0.97900 0.95508 0.83758 1.45913 1.52817 1.31806 1.04748 1.21542 0.80182 0.84728 0.85866 1.90704 1.39220 1.28252 1.87028 1.22682 0.97362 0.82176 0.92779 1.86668 1.72723 1.18212 1.56864 1.23171 0.98767 1.04072 0.91826 1.23776 0.84192 0.99650 0.94886 1.88889 1.52390 1.61777 1.27968 1.23912 0.94503 0.99735 0.86346 0.90736 0.92423 0.94419 0.94649 0.92426 0.90777 0.99740 0.99625 0.93186 0.93585 0.93311 0.74844 0.75169 0.89358 0.87501 0.89629 0.86799 0.87412 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.05 71.99 0.58 -3.20 16 2 C -0.06 -2.30 0.54 -52.18 -0.03 -2.32 16 3 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.94 7.65 25.60 0.20 -26.75 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 9 Si 0.96 42.85 29.54 68.60 2.03 44.87 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.14 4.73 4.56 86.38 0.39 5.13 16 14 N -0.70 -17.34 4.88 -463.07 -2.26 -19.60 16 15 C 0.49 13.47 6.60 87.66 0.58 14.05 16 16 O -0.57 -21.15 15.57 -3.04 -0.05 -21.20 16 17 C 0.09 1.88 1.33 -10.55 -0.01 1.86 16 18 O -0.54 -8.13 12.90 -148.98 -1.92 -10.05 16 19 C -0.14 -2.77 6.39 31.90 0.20 -2.57 16 20 C 0.05 0.81 7.72 72.67 0.56 1.37 16 21 O -0.39 -8.41 11.52 -148.98 -1.72 -10.12 16 22 C 0.03 0.58 7.18 72.35 0.52 1.10 16 23 H 0.07 1.58 6.86 -2.39 -0.02 1.56 16 24 H 0.06 1.92 6.62 -2.39 -0.02 1.91 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.95 6.62 -2.39 -0.02 1.93 16 28 H 0.07 1.63 6.86 -2.39 -0.02 1.61 16 29 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 7.03 4.76 -92.71 -0.44 6.59 16 35 H 0.40 2.82 7.70 -74.05 -0.57 2.25 16 36 H 0.09 2.16 6.82 -2.39 -0.02 2.14 16 37 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.28 7.97 -2.38 -0.02 1.26 16 41 H 0.09 1.65 7.69 -2.38 -0.02 1.63 16 Total: -1.00 -72.04 325.68 0.55 -71.49 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.03 Total: 13.39 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.15 Total: -12.35 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -1.97 Total: -76.04 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -3.68 Total: -41.37 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.04 0.55 -71.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638349547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.624 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds