Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47263 * 2 1 4 4 H 1.09005 * 109.47529 * 55.67427 * 3 2 1 5 5 C 1.52999 * 109.47317 * 295.67424 * 3 2 1 6 6 C 1.52997 * 109.47446 * 175.67372 * 3 2 1 7 7 H 1.09001 * 109.47442 * 179.97438 * 6 3 2 8 8 C 1.50703 * 109.47293 * 59.92933 * 6 3 2 9 9 O 1.20818 * 120.00201 * 266.61121 * 8 6 3 10 10 O 1.34234 * 119.99721 * 86.60306 * 8 6 3 11 11 C 1.45195 * 116.99814 * 180.02562 * 10 8 6 12 12 N 1.46907 * 109.46943 * 299.93496 * 6 3 2 13 13 C 1.47961 * 110.99591 * 292.76286 * 12 6 3 14 14 C 1.53932 * 86.17842 * 222.41752 * 13 12 6 15 15 O 1.42894 * 113.73593 * 269.25619 * 14 13 12 16 16 C 1.50703 * 113.73147 * 138.08498 * 14 13 12 17 17 H 1.07996 * 119.99980 * 4.80399 * 16 14 13 18 18 C 1.37880 * 120.00034 * 184.53302 * 16 14 13 19 19 N 1.31516 * 119.99790 * 7.73138 * 18 16 14 20 20 Si 1.86800 * 119.99907 * 187.73330 * 18 16 14 21 21 H 1.48496 * 109.47408 * 94.95591 * 20 18 16 22 22 H 1.48503 * 109.46689 * 214.95201 * 20 18 16 23 23 H 1.48501 * 109.47157 * 334.94800 * 20 18 16 24 24 C 1.47960 * 110.99858 * 193.40976 * 12 6 3 25 25 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47081 * 300.00008 * 1 2 3 27 27 H 1.09007 * 109.47152 * 59.99861 * 1 2 3 28 28 H 1.09008 * 109.46813 * 240.00357 * 2 1 3 29 29 H 1.08997 * 109.47166 * 120.00292 * 2 1 3 30 30 H 1.09009 * 109.47536 * 179.97438 * 5 3 2 31 31 H 1.08999 * 109.47120 * 299.99798 * 5 3 2 32 32 H 1.09000 * 109.47300 * 59.99705 * 5 3 2 33 33 H 1.09003 * 109.47150 * 180.02562 * 11 10 8 34 34 H 1.08994 * 109.47371 * 300.00195 * 11 10 8 35 35 H 1.09002 * 109.47020 * 60.00746 * 11 10 8 36 36 H 1.09003 * 113.75464 * 108.10452 * 13 12 6 37 37 H 1.09000 * 113.76508 * 336.73816 * 13 12 6 38 38 H 0.96703 * 114.00735 * 166.10217 * 15 14 13 39 39 H 0.97003 * 119.99455 * 180.02562 * 19 18 16 40 40 H 1.09002 * 113.76280 * 23.25965 * 24 12 6 41 41 H 1.09004 * 113.75581 * 251.90000 * 24 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6148 1.9782 0.8487 5 6 1.6208 2.1316 -1.3001 6 6 3.5661 1.4438 0.1088 7 1 3.9295 2.4715 0.1084 8 6 4.1541 0.7017 -1.0636 9 8 4.4086 -0.4754 -0.9674 10 8 4.3947 1.3485 -2.2150 11 6 4.9613 0.5704 -3.3021 12 7 3.9685 0.7835 1.3579 13 6 3.5558 1.5793 2.5350 14 6 4.9428 1.2492 3.1155 15 8 4.9678 0.0572 3.9031 16 6 5.6089 2.4171 3.7963 17 1 5.0781 3.3508 3.9093 18 6 6.8940 2.2917 4.2799 19 7 7.5935 1.2099 4.0154 20 14 7.6415 3.6585 5.3107 21 1 7.4477 3.3547 6.7513 22 1 9.0936 3.7618 5.0176 23 1 6.9775 4.9457 4.9825 24 6 5.3941 1.0416 1.6586 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.9838 3.1595 -1.2999 31 1 2.0461 1.5959 -2.1487 32 1 0.5336 2.1307 -1.3776 33 1 5.1060 1.2122 -4.1713 34 1 5.9212 0.1578 -2.9918 35 1 4.2823 -0.2425 -3.5594 36 1 2.7298 1.1399 3.0944 37 1 3.4101 2.6380 2.3204 38 1 5.8577 -0.2709 4.0921 39 1 8.4975 1.1216 4.3560 40 1 5.7862 1.9430 1.1876 41 1 6.0369 0.1726 1.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645388710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = -106.842866 kcal Electronic energy + Delta-G solvation = -22573.345220 eV Core-core repulsion = 19261.552435 eV Total energy + Delta-G solvation = -3311.792786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63451 -38.91405 -36.50259 -35.90586 -33.89505 -32.16003 -30.64528 -28.44263 -27.64114 -25.96242 -25.32756 -23.70255 -22.87765 -21.08726 -19.44882 -18.59854 -17.35813 -17.17028 -16.41236 -16.02502 -15.16662 -15.06684 -14.66093 -14.54721 -14.07380 -13.60434 -13.32600 -13.17900 -12.85503 -12.58812 -12.16275 -12.11893 -11.96824 -11.76241 -11.56470 -11.50494 -11.32433 -11.02298 -10.93072 -10.65371 -10.56393 -10.44951 -10.37864 -10.31028 -10.01099 -9.82653 -9.24872 -8.66670 -8.30407 -7.82430 -6.24830 -4.33034 2.56528 2.89277 3.21050 3.29089 3.31193 4.27244 4.57730 4.82418 4.97743 5.00118 5.11122 5.17674 5.24583 5.27420 5.51818 5.55360 5.57579 5.61572 5.70706 5.76975 5.86672 5.94195 6.02700 6.11464 6.17547 6.24197 6.26652 6.36705 6.47811 6.60049 6.63476 6.74337 7.02301 7.07432 7.27024 7.74426 7.79882 8.04489 8.15690 8.67936 9.36555 9.45553 10.82060 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021604 B = 0.005733 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.719992 B = 4882.772963 C = 5398.239707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.078 4.078 4 H 0.087 0.913 5 C -0.152 4.152 6 C 0.062 3.938 7 H 0.073 0.927 8 C 0.470 3.530 9 O -0.484 6.484 10 O -0.365 6.365 11 C 0.035 3.965 12 N -0.456 5.456 13 C 0.016 3.984 14 C 0.248 3.752 15 O -0.566 6.566 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.012 4.012 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.060 0.940 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 1.562 -11.354 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.096 4.096 4 H 0.105 0.895 5 C -0.209 4.209 6 C -0.048 4.048 7 H 0.091 0.909 8 C 0.311 3.689 9 O -0.368 6.368 10 O -0.282 6.282 11 C -0.059 4.059 12 N -0.181 5.181 13 C -0.113 4.113 14 C 0.206 3.794 15 O -0.374 6.374 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.129 4.129 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.079 0.491 -11.469 14.636 hybrid contribution 1.604 1.371 0.270 2.128 sum -7.475 1.862 -11.199 13.592 Atomic orbital electron populations 1.21823 0.96345 1.01254 1.01337 1.21525 0.94854 0.95464 1.03549 1.21123 0.91404 0.97922 0.99188 0.89476 1.21965 1.01337 1.00652 0.96982 1.22051 0.96203 0.96760 0.89788 0.90922 1.23636 0.75132 0.86873 0.83233 1.90640 1.46974 1.16811 1.82341 1.86544 1.75108 1.44038 1.22531 1.23170 0.98614 0.96424 0.87668 1.68688 1.08862 1.42832 0.97673 1.24131 1.00469 0.95717 0.90939 1.19702 0.89032 0.84493 0.86141 1.86084 1.34317 1.43419 1.73564 1.21566 0.99166 0.98196 1.38943 0.91649 1.25039 0.96599 0.96147 0.95121 1.69716 1.11056 1.27952 1.44209 0.86471 0.78195 0.81944 0.80734 1.20358 1.21130 1.19735 1.24756 0.88437 0.99664 1.01207 0.93048 0.92785 0.93101 0.92711 0.89701 0.92337 0.92533 0.92046 0.88529 0.92059 0.92274 0.90182 0.91327 0.76724 0.92182 0.92217 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.66 37.16 0.36 -1.42 16 2 C -0.12 -1.73 4.87 -26.73 -0.13 -1.86 16 3 C -0.08 -1.12 2.11 -90.62 -0.19 -1.31 16 4 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 5 C -0.15 -1.81 8.55 37.16 0.32 -1.49 16 6 C 0.06 1.09 1.40 -68.86 -0.10 0.99 16 7 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 8 C 0.47 8.42 4.96 36.01 0.18 8.60 16 9 O -0.48 -9.99 15.75 -18.74 -0.30 -10.29 16 10 O -0.37 -5.58 9.38 -39.27 -0.37 -5.95 16 11 C 0.04 0.42 10.56 101.05 1.07 1.48 16 12 N -0.46 -9.48 4.78 -231.66 -1.11 -10.59 16 13 C 0.02 0.33 6.33 -2.77 -0.02 0.31 16 14 C 0.25 6.16 1.27 -90.84 -0.12 6.05 16 15 O -0.57 -15.01 13.41 -35.23 -0.47 -15.48 16 16 C -0.54 -14.25 8.59 -34.44 -0.30 -14.54 16 17 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 18 C 0.07 1.95 5.37 -17.82 -0.10 1.86 16 19 N -0.89 -23.96 11.72 55.43 0.65 -23.31 16 20 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.01 -0.28 6.91 -2.77 -0.02 -0.30 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.53 6.54 -51.93 -0.34 0.19 16 28 H 0.05 0.87 7.03 -51.92 -0.37 0.50 16 29 H 0.08 1.48 7.47 -51.93 -0.39 1.10 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.70 6.47 -51.93 -0.34 0.37 16 32 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 35 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.32 7.79 -51.93 -0.40 0.92 16 38 H 0.38 10.23 7.35 45.56 0.33 10.56 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.06 1.40 7.69 -51.93 -0.40 1.00 16 41 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -29.20 329.70 -6.63 -35.83 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.95 Total: 11.09 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 0.96 Total: -1.63 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -0.46 Total: -33.90 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.14 Total: -31.72 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.20 -6.63 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645388710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.009 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds