Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47263 * 2 1 4 4 H 1.09005 * 109.47529 * 55.67427 * 3 2 1 5 5 C 1.52999 * 109.47317 * 295.67424 * 3 2 1 6 6 C 1.52997 * 109.47446 * 175.67372 * 3 2 1 7 7 H 1.09001 * 109.47442 * 179.97438 * 6 3 2 8 8 C 1.50703 * 109.47293 * 59.92933 * 6 3 2 9 9 O 1.20818 * 120.00201 * 266.61121 * 8 6 3 10 10 O 1.34234 * 119.99721 * 86.60306 * 8 6 3 11 11 C 1.45195 * 116.99814 * 180.02562 * 10 8 6 12 12 N 1.46907 * 109.46943 * 299.93496 * 6 3 2 13 13 C 1.47961 * 110.99591 * 292.76286 * 12 6 3 14 14 C 1.53932 * 86.17842 * 222.41752 * 13 12 6 15 15 O 1.42894 * 113.73593 * 269.25619 * 14 13 12 16 16 C 1.50703 * 113.73147 * 138.08498 * 14 13 12 17 17 H 1.07996 * 119.99980 * 4.80399 * 16 14 13 18 18 C 1.37880 * 120.00034 * 184.53302 * 16 14 13 19 19 N 1.31516 * 119.99790 * 7.73138 * 18 16 14 20 20 Si 1.86800 * 119.99907 * 187.73330 * 18 16 14 21 21 H 1.48496 * 109.47408 * 94.95591 * 20 18 16 22 22 H 1.48503 * 109.46689 * 214.95201 * 20 18 16 23 23 H 1.48501 * 109.47157 * 334.94800 * 20 18 16 24 24 C 1.47960 * 110.99858 * 193.40976 * 12 6 3 25 25 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47081 * 300.00008 * 1 2 3 27 27 H 1.09007 * 109.47152 * 59.99861 * 1 2 3 28 28 H 1.09008 * 109.46813 * 240.00357 * 2 1 3 29 29 H 1.08997 * 109.47166 * 120.00292 * 2 1 3 30 30 H 1.09009 * 109.47536 * 179.97438 * 5 3 2 31 31 H 1.08999 * 109.47120 * 299.99798 * 5 3 2 32 32 H 1.09000 * 109.47300 * 59.99705 * 5 3 2 33 33 H 1.09003 * 109.47150 * 180.02562 * 11 10 8 34 34 H 1.08994 * 109.47371 * 300.00195 * 11 10 8 35 35 H 1.09002 * 109.47020 * 60.00746 * 11 10 8 36 36 H 1.09003 * 113.75464 * 108.10452 * 13 12 6 37 37 H 1.09000 * 113.76508 * 336.73816 * 13 12 6 38 38 H 0.96703 * 114.00735 * 166.10217 * 15 14 13 39 39 H 0.97003 * 119.99455 * 180.02562 * 19 18 16 40 40 H 1.09002 * 113.76280 * 23.25965 * 24 12 6 41 41 H 1.09004 * 113.75581 * 251.90000 * 24 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6148 1.9782 0.8487 5 6 1.6208 2.1316 -1.3001 6 6 3.5661 1.4438 0.1088 7 1 3.9295 2.4715 0.1084 8 6 4.1541 0.7017 -1.0636 9 8 4.4086 -0.4754 -0.9674 10 8 4.3947 1.3485 -2.2150 11 6 4.9613 0.5704 -3.3021 12 7 3.9685 0.7835 1.3579 13 6 3.5558 1.5793 2.5350 14 6 4.9428 1.2492 3.1155 15 8 4.9678 0.0572 3.9031 16 6 5.6089 2.4171 3.7963 17 1 5.0781 3.3508 3.9093 18 6 6.8940 2.2917 4.2799 19 7 7.5935 1.2099 4.0154 20 14 7.6415 3.6585 5.3107 21 1 7.4477 3.3547 6.7513 22 1 9.0936 3.7618 5.0176 23 1 6.9775 4.9457 4.9825 24 6 5.3941 1.0416 1.6586 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.9838 3.1595 -1.2999 31 1 2.0461 1.5959 -2.1487 32 1 0.5336 2.1307 -1.3776 33 1 5.1060 1.2122 -4.1713 34 1 5.9212 0.1578 -2.9918 35 1 4.2823 -0.2425 -3.5594 36 1 2.7298 1.1399 3.0944 37 1 3.4101 2.6380 2.3204 38 1 5.8577 -0.2709 4.0921 39 1 8.4975 1.1216 4.3560 40 1 5.7862 1.9430 1.1876 41 1 6.0369 0.1726 1.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645388710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = -127.468330 kcal Electronic energy + Delta-G solvation = -22574.239607 eV Core-core repulsion = 19261.552435 eV Total energy + Delta-G solvation = -3312.687173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07520 -40.53038 -37.86689 -37.26079 -35.70029 -34.19589 -31.93026 -29.74664 -28.88591 -27.59909 -27.05197 -24.95466 -24.45290 -22.37823 -20.94064 -20.26178 -19.20953 -18.57608 -17.79722 -17.42176 -17.01892 -16.80960 -16.03687 -15.84866 -15.68851 -14.92028 -14.81648 -14.59943 -14.06363 -13.92214 -13.88090 -13.56305 -13.37558 -13.00074 -12.98362 -12.84925 -12.74476 -12.68963 -12.48229 -12.26210 -12.19851 -11.87340 -11.76800 -11.54862 -11.43359 -11.26032 -11.05538 -10.65279 -10.17453 -9.60379 -8.23326 -6.39233 1.16181 1.42012 1.45130 1.54214 1.64387 2.38556 2.93977 3.06007 3.58271 3.77247 3.82368 3.95774 4.11216 4.17631 4.27976 4.28594 4.32656 4.40810 4.45509 4.57969 4.63819 4.64856 4.69145 4.81815 4.87890 5.04525 5.08287 5.12487 5.15796 5.27372 5.27853 5.31971 5.39812 5.47316 5.58919 5.72444 6.03485 6.13258 6.65837 6.78554 7.33054 7.36507 8.82544 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021604 B = 0.005733 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.719992 B = 4882.772963 C = 5398.239707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.074 4.074 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.056 3.944 7 H 0.081 0.919 8 C 0.473 3.527 9 O -0.520 6.520 10 O -0.362 6.362 11 C 0.028 3.972 12 N -0.461 5.461 13 C 0.031 3.969 14 C 0.222 3.778 15 O -0.577 6.577 16 C -0.559 4.559 17 H 0.069 0.931 18 C 0.028 3.972 19 N -0.915 5.915 20 Si 0.963 3.037 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.264 1.264 24 C -0.001 4.001 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.376 0.624 39 H 0.269 0.731 40 H 0.056 0.944 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 3.459 -12.343 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.092 4.092 4 H 0.115 0.885 5 C -0.202 4.202 6 C -0.054 4.054 7 H 0.099 0.901 8 C 0.316 3.684 9 O -0.408 6.408 10 O -0.278 6.278 11 C -0.066 4.066 12 N -0.185 5.185 13 C -0.096 4.096 14 C 0.181 3.819 15 O -0.384 6.384 16 C -0.597 4.597 17 H 0.087 0.913 18 C -0.173 4.173 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.188 1.188 24 C -0.130 4.130 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.225 0.775 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.516 2.408 -12.481 16.497 hybrid contribution 2.062 0.745 0.490 2.246 sum -8.454 3.153 -11.990 15.006 Atomic orbital electron populations 1.21776 0.93691 1.01982 1.02639 1.21439 0.97122 0.95305 1.01156 1.21187 0.88804 0.98010 1.01227 0.88504 1.21926 1.02808 1.00648 0.94861 1.22204 0.98574 0.96458 0.88129 0.90129 1.23702 0.74339 0.86326 0.84035 1.90628 1.48681 1.18343 1.83099 1.86522 1.74773 1.44108 1.22380 1.23526 0.97979 0.97491 0.87558 1.68564 1.06728 1.43790 0.99449 1.24039 0.98342 0.96894 0.90363 1.20073 0.91822 0.83693 0.86276 1.86072 1.33886 1.44340 1.74144 1.21860 0.99635 0.98745 1.39467 0.91308 1.25804 0.97061 0.98341 0.96044 1.69819 1.11280 1.29503 1.44851 0.85469 0.77296 0.79505 0.78882 1.20291 1.20965 1.18817 1.24444 0.89743 0.97936 1.00893 0.92745 0.92035 0.91132 0.94235 0.93025 0.91287 0.93197 0.89730 0.84451 0.93035 0.91802 0.89658 0.89267 0.77485 0.92123 0.92573 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.66 71.98 0.70 -2.36 16 2 C -0.11 -3.23 4.87 30.59 0.15 -3.08 16 3 C -0.07 -1.97 2.11 -10.80 -0.02 -2.00 16 4 H 0.10 2.43 7.42 -2.38 -0.02 2.41 16 5 C -0.15 -2.99 8.55 71.98 0.62 -2.37 16 6 C 0.06 1.92 1.40 44.17 0.06 1.99 16 7 H 0.08 2.64 7.68 -2.39 -0.02 2.62 16 8 C 0.47 16.83 4.96 71.24 0.35 17.18 16 9 O -0.52 -21.97 15.75 21.99 0.35 -21.63 16 10 O -0.36 -10.55 9.38 -51.46 -0.48 -11.03 16 11 C 0.03 0.61 10.56 113.37 1.20 1.81 16 12 N -0.46 -19.31 4.78 -890.06 -4.25 -23.56 16 13 C 0.03 1.30 6.33 86.40 0.55 1.85 16 14 C 0.22 11.21 1.27 -10.90 -0.01 11.20 16 15 O -0.58 -31.51 13.41 -148.98 -2.00 -33.50 16 16 C -0.56 -29.48 8.59 25.60 0.22 -29.26 16 17 H 0.07 3.49 7.82 -2.91 -0.02 3.46 16 18 C 0.03 1.49 5.37 84.66 0.45 1.94 16 19 N -0.92 -50.15 11.72 21.45 0.25 -49.90 16 20 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 24 C 0.00 -0.04 6.91 86.40 0.60 0.56 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.23 6.54 -2.38 -0.02 1.21 16 28 H 0.04 1.24 7.03 -2.38 -0.02 1.22 16 29 H 0.05 1.82 7.47 -2.39 -0.02 1.80 16 30 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.10 6.47 -2.39 -0.02 1.09 16 32 H 0.08 1.38 6.54 -2.39 -0.02 1.36 16 33 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.24 8.13 -2.39 -0.02 1.23 16 35 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 36 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.09 3.27 7.79 -2.39 -0.02 3.26 16 38 H 0.38 20.99 7.35 -74.06 -0.54 20.44 16 39 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.06 2.70 7.69 -2.39 -0.02 2.68 16 41 H 0.04 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -63.94 329.70 1.22 -62.72 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.47 Total: 35.82 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.85 Total: -2.55 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -4.00 Total: -73.46 kcal Atomic # 8 Polarization: -64.03 SS G_CDS: -2.13 Total: -66.16 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -63.94 1.22 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645388710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.745 kcal (2) G-P(sol) polarization free energy of solvation -63.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds