Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 H 1.09000 * 109.46978 * 56.05337 * 3 2 1 5 5 C 1.52998 * 109.46934 * 176.04978 * 3 2 1 6 6 C 1.52999 * 109.47165 * 296.04995 * 3 2 1 7 7 H 1.09002 * 109.46965 * 54.14899 * 6 3 2 8 8 C 1.50697 * 109.47232 * 174.14725 * 6 3 2 9 9 O 1.20827 * 120.00014 * 92.76841 * 8 6 3 10 10 O 1.34233 * 119.99995 * 272.77083 * 8 6 3 11 11 C 1.45204 * 116.99810 * 184.11325 * 10 8 6 12 12 N 1.46900 * 109.47121 * 294.15189 * 6 3 2 13 13 C 1.47472 * 111.00171 * 87.41592 * 12 6 3 14 14 C 1.53509 * 87.93468 * 138.70051 * 13 12 6 15 15 O 1.42900 * 114.16921 * 87.61904 * 14 13 12 16 16 C 1.50696 * 114.17204 * 220.32748 * 14 13 12 17 17 H 1.08000 * 120.00214 * 93.84418 * 16 14 13 18 18 C 1.37879 * 119.99783 * 273.83984 * 16 14 13 19 19 N 1.31509 * 120.00290 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 120.00004 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46859 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47176 * 119.99799 * 20 18 16 23 23 H 1.48493 * 109.46987 * 240.00154 * 20 18 16 24 24 C 1.47480 * 110.99863 * 183.38578 * 12 6 3 25 25 H 1.09003 * 109.46420 * 57.41862 * 1 2 3 26 26 H 1.08998 * 109.47321 * 177.41746 * 1 2 3 27 27 H 1.09003 * 109.46968 * 297.42030 * 1 2 3 28 28 H 1.08996 * 109.46539 * 120.00203 * 2 1 3 29 29 H 1.09001 * 109.46747 * 240.00008 * 2 1 3 30 30 H 1.09001 * 109.46691 * 64.57242 * 5 3 2 31 31 H 1.09001 * 109.47166 * 184.56864 * 5 3 2 32 32 H 1.08998 * 109.47447 * 304.57115 * 5 3 2 33 33 H 1.08998 * 109.47184 * 59.99863 * 11 10 8 34 34 H 1.08998 * 109.47316 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47410 * 300.00002 * 11 10 8 36 36 H 1.09004 * 113.47670 * 253.46903 * 13 12 6 37 37 H 1.08998 * 113.48140 * 23.93040 * 13 12 6 38 38 H 0.96703 * 114.00481 * 86.16173 * 15 14 13 39 39 H 0.97004 * 120.00607 * 180.02562 * 19 18 16 40 40 H 1.09006 * 113.47692 * 336.06181 * 24 12 6 41 41 H 1.08999 * 113.47759 * 106.52209 * 24 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6201 1.9763 0.8525 5 6 3.5668 1.4436 0.0994 6 6 1.6128 2.1345 -1.2959 7 1 0.5336 2.0426 -1.4181 8 6 1.9891 3.5924 -1.2346 9 8 3.0494 3.9620 -1.6808 10 8 1.1463 4.4805 -0.6841 11 6 1.5327 5.8790 -0.7414 12 7 2.2902 1.5014 -2.4354 13 6 1.5182 0.3487 -2.9353 14 6 1.8489 0.8157 -4.3598 15 8 3.0828 0.3071 -4.8706 16 6 0.7034 0.6926 -5.3311 17 1 0.0509 1.5353 -5.5063 18 6 0.4882 -0.4958 -5.9963 19 7 1.2830 -1.5217 -5.7835 20 14 -0.9314 -0.6482 -7.2009 21 1 -1.6699 0.6388 -7.2609 22 1 -0.4035 -0.9798 -8.5487 23 1 -1.8496 -1.7247 -6.7502 24 6 1.9645 2.1948 -3.6956 25 1 -0.3632 0.5534 -0.8660 26 1 -0.3634 -1.0266 -0.0463 27 1 -0.3633 0.4733 0.9122 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.9892 0.9814 -0.7928 31 1 3.9249 2.4698 0.1811 32 1 3.8740 0.8803 0.9805 33 1 1.6405 6.1838 -1.7823 34 1 0.7657 6.4878 -0.2626 35 1 2.4816 6.0154 -0.2228 36 1 1.9611 -0.6141 -2.6802 37 1 0.4559 0.4011 -2.6968 38 1 3.0073 -0.5617 -5.2884 39 1 1.1319 -2.3577 -6.2517 40 1 1.0213 2.7401 -3.6600 41 1 2.7856 2.7969 -4.0848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645388711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -99.308696 kcal Electronic energy + Delta-G solvation = -22816.452963 eV Core-core repulsion = 19504.986883 eV Total energy + Delta-G solvation = -3311.466079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77105 -39.09299 -36.43619 -35.95569 -33.79695 -32.06805 -30.65285 -28.81043 -27.61269 -26.05140 -25.00876 -23.45447 -23.07614 -21.15092 -19.30580 -18.72484 -17.52223 -17.17143 -16.45029 -16.23009 -15.35833 -15.08955 -14.30777 -14.13243 -14.10735 -13.53790 -13.30299 -13.18993 -12.88642 -12.59462 -12.44602 -12.02697 -11.82313 -11.72377 -11.56227 -11.37802 -11.05263 -11.01759 -10.86746 -10.68467 -10.62976 -10.57249 -10.45114 -10.11621 -10.02483 -9.72360 -9.29156 -8.67693 -8.19165 -7.90790 -6.30078 -4.39760 2.46478 2.84995 3.16655 3.25891 3.29610 4.22418 4.63241 4.88255 4.94876 5.01200 5.13323 5.20140 5.21602 5.25352 5.45349 5.53162 5.64214 5.73446 5.83696 5.93825 5.94828 6.02410 6.14842 6.18629 6.25047 6.28998 6.33104 6.51566 6.52767 6.55874 6.72094 6.85414 6.99864 7.07981 7.30460 7.73300 7.78652 7.96869 8.08532 8.62815 9.30685 9.67813 10.75881 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.006259 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.451444 B = 4472.639713 C = 4894.329615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C -0.069 4.069 4 H 0.069 0.931 5 C -0.142 4.142 6 C 0.058 3.942 7 H 0.079 0.921 8 C 0.463 3.537 9 O -0.484 6.484 10 O -0.367 6.367 11 C 0.036 3.964 12 N -0.441 5.441 13 C -0.017 4.017 14 C 0.249 3.751 15 O -0.567 6.567 16 C -0.534 4.534 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.002 3.998 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.390 0.610 39 H 0.271 0.729 40 H 0.058 0.942 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 5.891 11.230 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C -0.088 4.088 4 H 0.087 0.913 5 C -0.199 4.199 6 C -0.052 4.052 7 H 0.096 0.904 8 C 0.304 3.696 9 O -0.368 6.368 10 O -0.284 6.284 11 C -0.058 4.058 12 N -0.165 5.165 13 C -0.145 4.145 14 C 0.207 3.793 15 O -0.380 6.380 16 C -0.572 4.572 17 H 0.085 0.915 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.127 4.127 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.942 6.354 11.541 13.208 hybrid contribution -1.837 -0.209 -0.911 2.061 sum -2.779 6.145 10.630 12.589 Atomic orbital electron populations 1.21900 0.96110 1.01796 1.01539 1.21736 0.95735 0.95542 1.03330 1.21005 0.97434 0.96442 0.93886 0.91286 1.21760 0.94209 1.01487 1.02477 1.22191 0.99295 0.86151 0.97522 0.90374 1.23864 0.82375 0.89177 0.74189 1.90651 1.23553 1.80321 1.42292 1.86525 1.50245 1.18355 1.73235 1.23192 1.01561 0.78396 1.02685 1.69179 1.42086 1.05836 0.99423 1.24890 0.95641 0.94292 0.99724 1.19341 0.83716 0.87733 0.88474 1.86059 1.31576 1.41504 1.78826 1.21602 1.12421 0.98395 1.24826 0.91530 1.25050 0.96606 0.95187 0.96152 1.69296 1.38382 1.03210 1.42853 0.86358 0.81670 0.78257 0.80679 1.19596 1.20621 1.20711 1.24092 0.99031 0.99268 0.90299 0.92291 0.92629 0.93213 0.91999 0.89698 0.90027 0.93489 0.93430 0.92033 0.88452 0.92132 0.90525 0.91768 0.75437 0.91824 0.92336 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.50 37.16 0.35 -1.70 16 2 C -0.13 -1.79 4.92 -26.73 -0.13 -1.92 16 3 C -0.07 -1.03 2.21 -90.62 -0.20 -1.23 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.14 -2.20 8.74 37.16 0.32 -1.88 16 6 C 0.06 1.02 1.50 -68.87 -0.10 0.91 16 7 H 0.08 1.33 5.60 -51.93 -0.29 1.04 16 8 C 0.46 8.19 5.58 36.00 0.20 8.39 16 9 O -0.48 -9.75 15.18 -18.75 -0.28 -10.03 16 10 O -0.37 -5.58 10.57 -39.27 -0.41 -5.99 16 11 C 0.04 0.41 10.57 101.05 1.07 1.48 16 12 N -0.44 -9.11 4.74 -238.02 -1.13 -10.24 16 13 C -0.02 -0.37 5.03 -7.56 -0.04 -0.41 16 14 C 0.25 6.25 1.57 -91.25 -0.14 6.11 16 15 O -0.57 -15.38 13.54 -35.23 -0.48 -15.85 16 16 C -0.53 -14.03 8.69 -34.44 -0.30 -14.33 16 17 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.07 1.86 5.40 -17.82 -0.10 1.77 16 19 N -0.90 -23.52 11.02 55.43 0.61 -22.91 16 20 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 C 0.00 0.04 5.71 -7.56 -0.04 0.00 16 25 H 0.06 0.85 4.97 -51.93 -0.26 0.59 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.40 5.07 -51.93 -0.26 1.14 16 30 H 0.08 1.47 7.29 -51.93 -0.38 1.09 16 31 H 0.05 0.76 7.17 -51.93 -0.37 0.38 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.08 1.73 6.89 -51.93 -0.36 1.37 16 37 H 0.06 1.36 6.05 -51.93 -0.31 1.04 16 38 H 0.39 10.65 6.33 45.56 0.29 10.94 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.06 1.26 7.78 -51.93 -0.40 0.86 16 41 H 0.08 1.85 8.12 -51.93 -0.42 1.43 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -28.50 321.80 -6.67 -35.17 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.70 Total: 12.78 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.89 Total: -2.81 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: -0.52 Total: -33.15 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.18 Total: -31.88 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.50 -6.67 -35.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645388711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.136 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds