Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 H 1.09000 * 109.46978 * 56.05337 * 3 2 1 5 5 C 1.52998 * 109.46934 * 176.04978 * 3 2 1 6 6 C 1.52999 * 109.47165 * 296.04995 * 3 2 1 7 7 H 1.09002 * 109.46965 * 54.14899 * 6 3 2 8 8 C 1.50697 * 109.47232 * 174.14725 * 6 3 2 9 9 O 1.20827 * 120.00014 * 92.76841 * 8 6 3 10 10 O 1.34233 * 119.99995 * 272.77083 * 8 6 3 11 11 C 1.45204 * 116.99810 * 184.11325 * 10 8 6 12 12 N 1.46900 * 109.47121 * 294.15189 * 6 3 2 13 13 C 1.47472 * 111.00171 * 87.41592 * 12 6 3 14 14 C 1.53509 * 87.93468 * 138.70051 * 13 12 6 15 15 O 1.42900 * 114.16921 * 87.61904 * 14 13 12 16 16 C 1.50696 * 114.17204 * 220.32748 * 14 13 12 17 17 H 1.08000 * 120.00214 * 93.84418 * 16 14 13 18 18 C 1.37879 * 119.99783 * 273.83984 * 16 14 13 19 19 N 1.31509 * 120.00290 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 120.00004 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46859 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47176 * 119.99799 * 20 18 16 23 23 H 1.48493 * 109.46987 * 240.00154 * 20 18 16 24 24 C 1.47480 * 110.99863 * 183.38578 * 12 6 3 25 25 H 1.09003 * 109.46420 * 57.41862 * 1 2 3 26 26 H 1.08998 * 109.47321 * 177.41746 * 1 2 3 27 27 H 1.09003 * 109.46968 * 297.42030 * 1 2 3 28 28 H 1.08996 * 109.46539 * 120.00203 * 2 1 3 29 29 H 1.09001 * 109.46747 * 240.00008 * 2 1 3 30 30 H 1.09001 * 109.46691 * 64.57242 * 5 3 2 31 31 H 1.09001 * 109.47166 * 184.56864 * 5 3 2 32 32 H 1.08998 * 109.47447 * 304.57115 * 5 3 2 33 33 H 1.08998 * 109.47184 * 59.99863 * 11 10 8 34 34 H 1.08998 * 109.47316 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47410 * 300.00002 * 11 10 8 36 36 H 1.09004 * 113.47670 * 253.46903 * 13 12 6 37 37 H 1.08998 * 113.48140 * 23.93040 * 13 12 6 38 38 H 0.96703 * 114.00481 * 86.16173 * 15 14 13 39 39 H 0.97004 * 120.00607 * 180.02562 * 19 18 16 40 40 H 1.09006 * 113.47692 * 336.06181 * 24 12 6 41 41 H 1.08999 * 113.47759 * 106.52209 * 24 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6201 1.9763 0.8525 5 6 3.5668 1.4436 0.0994 6 6 1.6128 2.1345 -1.2959 7 1 0.5336 2.0426 -1.4181 8 6 1.9891 3.5924 -1.2346 9 8 3.0494 3.9620 -1.6808 10 8 1.1463 4.4805 -0.6841 11 6 1.5327 5.8790 -0.7414 12 7 2.2902 1.5014 -2.4354 13 6 1.5182 0.3487 -2.9353 14 6 1.8489 0.8157 -4.3598 15 8 3.0828 0.3071 -4.8706 16 6 0.7034 0.6926 -5.3311 17 1 0.0509 1.5353 -5.5063 18 6 0.4882 -0.4958 -5.9963 19 7 1.2830 -1.5217 -5.7835 20 14 -0.9314 -0.6482 -7.2009 21 1 -1.6699 0.6388 -7.2609 22 1 -0.4035 -0.9798 -8.5487 23 1 -1.8496 -1.7247 -6.7502 24 6 1.9645 2.1948 -3.6956 25 1 -0.3632 0.5534 -0.8660 26 1 -0.3634 -1.0266 -0.0463 27 1 -0.3633 0.4733 0.9122 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.9892 0.9814 -0.7928 31 1 3.9249 2.4698 0.1811 32 1 3.8740 0.8803 0.9805 33 1 1.6405 6.1838 -1.7823 34 1 0.7657 6.4878 -0.2626 35 1 2.4816 6.0154 -0.2228 36 1 1.9611 -0.6141 -2.6802 37 1 0.4559 0.4011 -2.6968 38 1 3.0073 -0.5617 -5.2884 39 1 1.1319 -2.3577 -6.2517 40 1 1.0213 2.7401 -3.6600 41 1 2.7856 2.7969 -4.0848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645388711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = -119.366588 kcal Electronic energy + Delta-G solvation = -22817.322738 eV Core-core repulsion = 19504.986883 eV Total energy + Delta-G solvation = -3312.335855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24095 -40.64191 -37.88275 -37.31008 -35.61493 -34.09667 -31.91933 -30.16166 -29.01178 -27.61959 -26.78737 -24.96380 -24.42359 -22.41997 -20.70545 -20.56550 -19.26858 -18.65901 -17.88501 -17.53274 -17.05753 -16.83511 -15.89695 -15.76271 -15.38361 -15.07798 -14.67876 -14.45378 -14.24978 -14.06467 -13.87020 -13.59393 -13.43848 -13.19480 -13.01456 -12.80690 -12.77074 -12.64266 -12.26881 -12.22995 -12.03227 -11.88315 -11.83056 -11.76847 -11.36156 -11.21775 -11.07340 -10.64968 -10.04972 -9.66769 -8.25847 -6.43447 1.08360 1.41495 1.45228 1.55905 1.61807 2.37150 2.94539 3.06773 3.62154 3.71977 3.85134 4.00393 4.02245 4.15869 4.28214 4.28802 4.29444 4.38133 4.45957 4.56157 4.63648 4.65755 4.78410 4.83784 4.84845 4.98385 5.09977 5.11571 5.20157 5.26477 5.32811 5.33875 5.40470 5.48455 5.61803 5.74461 5.94942 6.14559 6.61632 6.72611 7.29659 7.57343 8.79772 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.006259 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.451444 B = 4472.639713 C = 4894.329615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.065 4.065 4 H 0.095 0.905 5 C -0.136 4.136 6 C 0.054 3.946 7 H 0.088 0.912 8 C 0.466 3.534 9 O -0.516 6.516 10 O -0.364 6.364 11 C 0.028 3.972 12 N -0.443 5.443 13 C 0.007 3.993 14 C 0.221 3.779 15 O -0.583 6.583 16 C -0.558 4.558 17 H 0.063 0.937 18 C 0.032 3.968 19 N -0.916 5.916 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.273 1.273 24 C 0.011 3.989 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.385 0.615 39 H 0.276 0.724 40 H 0.067 0.933 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 6.282 12.782 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.083 4.083 4 H 0.113 0.887 5 C -0.194 4.194 6 C -0.056 4.056 7 H 0.105 0.895 8 C 0.309 3.691 9 O -0.403 6.403 10 O -0.280 6.280 11 C -0.065 4.065 12 N -0.167 5.167 13 C -0.122 4.122 14 C 0.180 3.820 15 O -0.395 6.395 16 C -0.596 4.596 17 H 0.081 0.919 18 C -0.169 4.169 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.199 1.199 24 C -0.118 4.118 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.590 6.759 13.114 14.979 hybrid contribution -1.301 -0.252 -1.345 1.888 sum -3.891 6.508 11.769 14.000 Atomic orbital electron populations 1.21878 0.95137 1.02131 1.01939 1.21696 0.96552 0.94747 1.03042 1.21074 0.97053 0.97020 0.93196 0.88667 1.21688 0.94583 1.00913 1.02192 1.22293 0.99452 0.86557 0.97317 0.89481 1.23827 0.82062 0.89570 0.73664 1.90645 1.24946 1.80871 1.43836 1.86500 1.49392 1.19808 1.72342 1.23565 1.03374 0.76585 1.03020 1.69067 1.42684 1.05234 0.99737 1.24535 0.95938 0.94168 0.97516 1.19717 0.82948 0.89474 0.89877 1.86040 1.33062 1.41289 1.79156 1.21803 1.12976 0.98746 1.26044 0.91853 1.25766 0.98872 0.94735 0.97490 1.69361 1.39404 1.03565 1.43369 0.85372 0.78786 0.78303 0.78351 1.19350 1.20522 1.19870 1.23937 0.98600 0.97992 0.91277 0.93855 0.92211 0.90933 0.89750 0.92510 0.93115 0.94474 0.90758 0.92574 0.84441 0.91812 0.91650 0.91040 0.76034 0.91439 0.91451 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.50 71.98 0.68 -2.98 16 2 C -0.12 -3.24 4.92 30.60 0.15 -3.09 16 3 C -0.06 -1.81 2.21 -10.79 -0.02 -1.83 16 4 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.14 -4.07 8.74 71.98 0.63 -3.44 16 6 C 0.05 1.82 1.50 44.17 0.07 1.89 16 7 H 0.09 2.83 5.60 -2.39 -0.01 2.82 16 8 C 0.47 16.06 5.58 71.24 0.40 16.46 16 9 O -0.52 -20.81 15.18 21.96 0.33 -20.48 16 10 O -0.36 -10.32 10.57 -51.44 -0.54 -10.86 16 11 C 0.03 0.57 10.57 113.37 1.20 1.77 16 12 N -0.44 -18.51 4.74 -907.36 -4.30 -22.81 16 13 C 0.01 0.32 5.03 83.57 0.42 0.74 16 14 C 0.22 11.35 1.57 -11.20 -0.02 11.33 16 15 O -0.58 -32.74 13.54 -148.98 -2.02 -34.75 16 16 C -0.56 -29.63 8.69 25.60 0.22 -29.41 16 17 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 18 C 0.03 1.63 5.40 84.66 0.46 2.08 16 19 N -0.92 -48.45 11.02 21.45 0.24 -48.22 16 20 Si 0.97 40.88 29.54 68.60 2.03 42.91 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 C 0.01 0.51 5.71 83.57 0.48 0.98 16 25 H 0.04 1.16 4.97 -2.39 -0.01 1.15 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.84 5.07 -2.39 -0.01 1.82 16 30 H 0.05 1.83 7.29 -2.39 -0.02 1.81 16 31 H 0.04 1.16 7.17 -2.39 -0.02 1.14 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 36 H 0.07 3.03 6.89 -2.38 -0.02 3.01 16 37 H 0.07 3.02 6.05 -2.39 -0.01 3.00 16 38 H 0.38 21.79 6.33 -74.06 -0.47 21.32 16 39 H 0.28 13.67 8.31 -92.70 -0.77 12.90 16 40 H 0.07 2.94 7.78 -2.38 -0.02 2.92 16 41 H 0.06 2.81 8.12 -2.39 -0.02 2.79 16 Total: -1.00 -61.86 321.80 0.96 -60.90 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.56 Total: 38.82 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.66 Total: -5.51 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -4.06 Total: -71.03 kcal Atomic # 8 Polarization: -63.87 SS G_CDS: -2.23 Total: -66.09 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -61.86 0.96 -60.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645388711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.465 kcal (2) G-P(sol) polarization free energy of solvation -61.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds