Wall clock time and date at job start Mon Mar 30 2020 00:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.62927 * 2 1 4 4 O 1.43368 * 109.62704 * 120.39257 * 2 1 3 5 5 C 1.44199 * 107.28681 * 119.21063 * 4 2 1 6 6 C 1.54912 * 103.07531 * 338.56255 * 5 4 2 7 7 H 1.09001 * 110.97734 * 277.41211 * 6 5 4 8 8 C 1.53006 * 110.97773 * 153.67121 * 6 5 4 9 9 C 1.52998 * 109.47337 * 175.00113 * 8 6 5 10 10 N 1.46894 * 109.47075 * 180.02562 * 9 8 6 11 11 C 1.47480 * 111.00460 * 74.02664 * 10 9 8 12 12 C 1.53508 * 87.93553 * 138.70243 * 11 10 9 13 13 O 1.42894 * 114.17116 * 87.62271 * 12 11 10 14 14 C 1.50698 * 114.34287 * 220.31805 * 12 11 10 15 15 H 1.07999 * 120.00038 * 99.27986 * 14 12 11 16 16 C 1.37876 * 120.00325 * 279.27522 * 14 12 11 17 17 N 1.31513 * 119.99563 * 7.45385 * 16 14 12 18 18 Si 1.86793 * 120.00466 * 187.45220 * 16 14 12 19 19 H 1.48506 * 109.47208 * 84.99012 * 18 16 14 20 20 H 1.48495 * 109.47427 * 204.99100 * 18 16 14 21 21 H 1.48498 * 109.47156 * 324.99326 * 18 16 14 22 22 C 1.47483 * 111.00115 * 169.99770 * 10 9 8 23 23 O 1.43754 * 109.63423 * 239.75429 * 2 1 3 24 24 H 1.08991 * 109.47463 * 301.06158 * 1 2 3 25 25 H 1.09008 * 109.46641 * 61.05997 * 1 2 3 26 26 H 1.09002 * 109.47378 * 181.05922 * 1 2 3 27 27 H 1.09003 * 109.46935 * 178.93443 * 3 2 1 28 28 H 1.08996 * 109.47335 * 298.93717 * 3 2 1 29 29 H 1.09002 * 109.47196 * 58.94285 * 3 2 1 30 30 H 1.08994 * 110.69585 * 220.16203 * 5 4 2 31 31 H 1.09004 * 110.69377 * 96.96048 * 5 4 2 32 32 H 1.09002 * 109.46785 * 295.00046 * 8 6 5 33 33 H 1.09005 * 109.47236 * 54.99616 * 8 6 5 34 34 H 1.09002 * 109.46684 * 300.00019 * 9 8 6 35 35 H 1.08995 * 109.47276 * 59.99699 * 9 8 6 36 36 H 1.09000 * 113.47992 * 253.47142 * 11 10 9 37 37 H 1.09008 * 113.47560 * 23.93529 * 11 10 9 38 38 H 0.96705 * 113.99802 * 80.36323 * 13 12 11 39 39 H 0.96998 * 119.99865 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.47491 * 336.06024 * 22 10 9 41 41 H 1.08993 * 113.47583 * 106.46580 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 8 2.0116 -0.6832 1.1648 5 6 2.7884 -1.8098 0.7103 6 6 2.2652 -2.0381 -0.7298 7 1 1.3460 -2.6240 -0.7228 8 6 3.3310 -2.7070 -1.6003 9 6 2.7393 -3.0290 -2.9740 10 7 3.7624 -3.6717 -3.8094 11 6 3.9958 -5.0638 -3.3820 12 6 4.0572 -5.4506 -4.8663 13 8 5.3567 -5.3319 -5.4486 14 6 3.3731 -6.7517 -5.1980 15 1 2.3759 -6.7472 -5.6128 16 6 4.0202 -7.9481 -4.9721 17 7 5.1701 -7.9633 -4.3341 18 14 3.2637 -9.5471 -5.5720 19 1 3.6431 -9.7729 -6.9899 20 1 3.7615 -10.6727 -4.7411 21 1 1.7849 -9.4670 -5.4621 22 6 3.1711 -4.2103 -5.0485 23 8 2.0130 -0.6820 -1.1696 24 1 -0.3634 0.5302 0.8802 25 1 -0.3633 0.4973 -0.8994 26 1 -0.3634 -1.0275 0.0190 27 1 3.1338 1.4381 0.0191 28 1 1.6977 1.9503 -0.8993 29 1 1.6667 1.9614 0.8804 30 1 2.5987 -2.6845 1.3323 31 1 3.8508 -1.5662 0.7001 32 1 4.1789 -2.0324 -1.7189 33 1 3.6640 -3.6287 -1.1230 34 1 1.8913 -3.7035 -2.8552 35 1 2.4063 -2.1074 -3.4512 36 1 4.9407 -5.2044 -2.8572 37 1 3.1499 -5.5034 -2.8534 38 1 5.9430 -6.0768 -5.2572 39 1 5.6252 -8.8050 -4.1748 40 1 2.1052 -4.4221 -4.9646 41 1 3.4163 -3.6269 -5.9359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658382223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:14 Heat of formation + Delta-G solvation = -130.956252 kcal Electronic energy + Delta-G solvation = -21561.866669 eV Core-core repulsion = 18249.028249 eV Total energy + Delta-G solvation = -3312.838420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68778 -40.91396 -36.76866 -36.01795 -34.82825 -34.18086 -32.59548 -29.90833 -28.40712 -28.08463 -26.73866 -25.89343 -23.29567 -22.15660 -22.05574 -20.55962 -19.16672 -18.48017 -17.41020 -17.12807 -16.83181 -16.39338 -16.24670 -15.76690 -15.65866 -15.22386 -14.73927 -14.67028 -14.19511 -13.98949 -13.69321 -13.61721 -13.43808 -13.19539 -13.14659 -13.00182 -12.92760 -12.74139 -12.64031 -12.58543 -12.25921 -12.21513 -11.78503 -11.63224 -11.15123 -11.02402 -10.68431 -10.64931 -10.09771 -9.66091 -8.24353 -6.40222 1.42480 1.45551 1.53678 2.34075 2.38274 2.93550 2.96584 3.09275 3.47854 3.77449 3.80909 3.92307 3.94810 4.01515 4.08546 4.23849 4.29209 4.38070 4.44768 4.55448 4.59523 4.64266 4.66256 4.71511 4.75952 4.76302 4.89881 4.91033 5.04079 5.12582 5.16563 5.18588 5.22560 5.39225 5.48021 5.72784 6.01295 6.11261 6.33669 6.64197 7.32277 7.40693 8.81405 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.003586 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.121309 B = 7805.963387 C = 7952.944485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.235 3.765 3 C -0.152 4.152 4 O -0.394 6.394 5 C 0.026 3.974 6 C 0.054 3.946 7 H 0.090 0.910 8 C -0.095 4.095 9 C 0.026 3.974 10 N -0.479 5.479 11 C 0.000 4.000 12 C 0.218 3.782 13 O -0.577 6.577 14 C -0.563 4.563 15 H 0.063 0.937 16 C 0.032 3.968 17 N -0.912 5.912 18 Si 0.963 3.037 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.013 3.987 23 O -0.384 6.384 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.378 0.622 39 H 0.272 0.728 40 H 0.077 0.923 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 12.151 10.514 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.159 3.841 3 C -0.209 4.209 4 O -0.316 6.316 5 C -0.050 4.050 6 C -0.004 4.004 7 H 0.108 0.892 8 C -0.133 4.133 9 C -0.103 4.103 10 N -0.201 5.201 11 C -0.129 4.129 12 C 0.177 3.823 13 O -0.386 6.386 14 C -0.601 4.601 15 H 0.081 0.919 16 C -0.169 4.169 17 N -0.551 5.551 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.116 4.116 23 O -0.306 6.306 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.229 0.771 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.315 13.288 10.360 18.369 hybrid contribution -0.589 -2.075 -0.068 2.158 sum -7.904 11.212 10.293 17.150 Atomic orbital electron populations 1.22363 0.92645 1.03351 1.04141 1.23699 0.93978 0.91962 0.74435 1.22085 1.02008 0.92745 1.04111 1.88841 1.69915 1.42568 1.30258 1.24311 0.96648 0.89903 0.94135 1.23933 0.98878 0.84148 0.93416 0.89196 1.21375 0.97294 1.00667 0.93973 1.22595 0.93684 0.99455 0.94579 1.68874 1.32396 1.14717 1.04141 1.24298 0.99577 0.88151 1.00890 1.19728 0.81664 0.91744 0.89144 1.86057 1.26082 1.49198 1.77222 1.21759 1.02449 0.91634 1.44221 0.91897 1.25752 0.95453 1.02322 0.93386 1.69767 1.17075 1.28487 1.39789 0.85506 0.78868 0.78504 0.78349 1.20166 1.20551 1.19296 1.23941 0.97686 0.95569 0.94401 1.89291 1.86148 1.22381 1.32737 0.89549 0.89928 0.92291 0.92287 0.89969 0.89174 0.86300 0.90187 0.90927 0.89859 0.94224 0.90796 0.92796 0.92313 0.77146 0.91871 0.90519 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.20 71.98 0.66 -2.31 16 2 C 0.24 5.16 1.47 30.59 0.04 5.20 16 3 C -0.15 -2.76 9.24 71.98 0.66 -2.10 16 4 O -0.39 -9.22 10.87 -126.22 -1.37 -10.59 16 5 C 0.03 0.55 7.54 72.64 0.55 1.10 16 6 C 0.05 1.29 3.43 31.25 0.11 1.40 16 7 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 8 C -0.10 -2.68 5.09 30.60 0.16 -2.53 16 9 C 0.03 0.85 4.79 86.30 0.41 1.26 16 10 N -0.48 -19.87 6.41 -928.27 -5.95 -25.82 16 11 C 0.00 0.01 6.42 83.57 0.54 0.55 16 12 C 0.22 11.07 1.40 -11.20 -0.02 11.05 16 13 O -0.58 -31.35 13.51 -148.98 -2.01 -33.37 16 14 C -0.56 -29.92 8.66 25.60 0.22 -29.69 16 15 H 0.06 3.28 7.82 -2.91 -0.02 3.26 16 16 C 0.03 1.66 5.33 84.65 0.45 2.11 16 17 N -0.91 -48.52 11.64 21.45 0.25 -48.27 16 18 Si 0.96 41.13 29.54 68.60 2.03 43.15 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 C 0.01 0.56 7.12 83.57 0.60 1.16 16 23 O -0.38 -10.09 10.68 -126.22 -1.35 -11.44 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.64 8.04 -2.38 -0.02 1.62 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 2.31 7.67 -2.38 -0.02 2.29 16 34 H 0.04 1.29 7.56 -2.39 -0.02 1.27 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.06 2.64 7.66 -2.38 -0.02 2.62 16 38 H 0.38 20.72 7.11 -74.05 -0.53 20.19 16 39 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 40 H 0.08 3.13 7.73 -2.39 -0.02 3.11 16 41 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -59.22 333.26 -3.55 -62.77 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.48 Total: 36.37 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.39 Total: -12.80 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -5.70 Total: -74.10 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -4.73 Total: -55.40 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -59.22 -3.55 -62.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658382223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.185 kcal (2) G-P(sol) polarization free energy of solvation -59.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds