Wall clock time and date at job start Mon Mar 30 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48504 * 109.46893 * 269.99501 * 3 2 1 5 5 H 1.48496 * 109.47293 * 29.99324 * 3 2 1 6 6 H 1.48507 * 109.47391 * 149.99787 * 3 2 1 7 7 C 1.37884 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46859 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46928 * 179.97438 * 11 10 9 13 13 C 1.46840 * 111.00296 * 293.95563 * 12 11 10 14 14 C 1.50161 * 110.25159 * 174.60643 * 13 12 11 15 15 C 1.31480 * 123.06049 * 342.92244 * 14 13 12 16 16 C 1.47823 * 118.65932 * 180.31663 * 15 14 13 17 17 C 1.39531 * 120.13725 * 244.72274 * 16 15 14 18 18 C 1.37982 * 119.85222 * 180.30081 * 17 16 15 19 19 C 1.38337 * 120.14186 * 359.97438 * 18 17 16 20 20 C 1.38356 * 120.28806 * 0.02562 * 19 18 17 21 21 C 1.37968 * 120.13877 * 0.02562 * 20 19 18 22 22 C 1.50326 * 122.67923 * 0.59771 * 15 14 13 23 23 C 1.47223 * 110.99997 * 56.96359 * 12 11 10 24 24 H 0.97000 * 120.00019 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47668 * 59.99936 * 9 7 2 26 26 H 1.09005 * 109.47252 * 299.99128 * 9 7 2 27 27 H 1.09008 * 109.47177 * 59.99994 * 10 9 7 28 28 H 1.08999 * 109.47307 * 299.99976 * 10 9 7 29 29 H 1.08993 * 109.47048 * 60.00715 * 11 10 9 30 30 H 1.08991 * 109.47558 * 299.99615 * 11 10 9 31 31 H 1.09001 * 109.33912 * 54.36919 * 13 12 11 32 32 H 1.08997 * 109.20896 * 294.76518 * 13 12 11 33 33 H 1.08011 * 118.47279 * 162.94709 * 14 13 12 34 34 H 1.07994 * 120.07453 * 0.25568 * 17 16 15 35 35 H 1.07994 * 119.92795 * 180.02562 * 18 17 16 36 36 H 1.08004 * 119.86019 * 179.97438 * 19 18 17 37 37 H 1.07994 * 119.92671 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.07335 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.42970 * 103.28531 * 22 15 14 40 40 H 1.09002 * 109.43598 * 223.13956 * 22 15 14 41 41 H 1.09000 * 109.62504 * 286.99054 * 23 12 11 42 42 H 1.08998 * 109.62751 * 47.37444 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0006 13 6 3.1989 -6.1421 -1.2528 14 6 4.2574 -7.2049 -1.1837 15 6 4.6615 -7.7424 -0.0539 16 6 5.7160 -8.7774 -0.0985 17 6 5.4319 -10.0846 0.2984 18 6 6.4222 -11.0446 0.2603 19 6 7.6944 -10.7135 -0.1706 20 6 7.9826 -9.4192 -0.5655 21 6 7.0015 -8.4498 -0.5311 22 6 4.0906 -7.3518 1.2807 23 6 3.3479 -6.0177 1.1521 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8913 31 1 3.6703 -5.1733 -1.4179 32 1 2.5221 -6.3598 -2.0789 33 1 4.7082 -7.5433 -2.1051 34 1 4.4392 -10.3442 0.6353 35 1 6.2035 -12.0567 0.5668 36 1 8.4662 -11.4685 -0.1982 37 1 8.9776 -9.1673 -0.9013 38 1 7.2277 -7.4396 -0.8392 39 1 3.3999 -8.1239 1.6196 40 1 4.8990 -7.2465 2.0043 41 1 4.0629 -5.2105 0.9929 42 1 2.7756 -5.8262 2.0598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002168158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:19 Heat of formation + Delta-G solvation = 25.545112 kcal Electronic energy + Delta-G solvation = -19715.544379 eV Core-core repulsion = 16852.634381 eV Total energy + Delta-G solvation = -2862.909998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76079 -38.54954 -35.09827 -33.24997 -31.37334 -31.15763 -30.66027 -29.64291 -26.50287 -24.52945 -23.56328 -22.49038 -22.34658 -21.43407 -20.07850 -17.71176 -16.90208 -16.36795 -15.82152 -15.39311 -14.93990 -14.85387 -14.43089 -14.29023 -13.94899 -13.59690 -13.41238 -13.28302 -12.66832 -12.42179 -12.28642 -12.15767 -11.74279 -11.69303 -11.27579 -11.26787 -10.94771 -10.82194 -10.63117 -10.56842 -10.35985 -9.69024 -9.48070 -9.19332 -9.15913 -9.11995 -8.50120 -8.35295 -7.86271 -6.00420 -4.03060 1.07164 1.23206 2.18469 3.30743 3.37040 3.40377 3.61250 4.23746 4.45210 4.51299 4.76410 4.78485 4.92573 4.95992 5.26004 5.29511 5.33080 5.35031 5.37771 5.51652 5.58557 5.70648 5.73799 5.81672 5.87126 5.93423 5.99200 6.05735 6.18532 6.20661 6.30520 6.32336 6.39739 6.49912 6.58895 6.76862 6.82701 6.90140 7.05488 7.32696 7.45205 7.66010 7.80793 7.99107 8.42416 9.03900 9.61046 11.10626 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.003004 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.575209 B = 9319.451056 C = 9757.800936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.145 4.145 11 C 0.051 3.949 12 N -0.534 5.534 13 C 0.076 3.924 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.042 4.042 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.070 4.070 23 C 0.050 3.950 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.345 -20.933 -0.057 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.184 4.184 11 C -0.077 4.077 12 N -0.257 5.257 13 C -0.051 4.051 14 C -0.151 4.151 15 C -0.091 4.091 16 C -0.042 4.042 17 C -0.127 4.127 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.129 4.129 22 C -0.107 4.107 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.913 -21.271 -0.014 24.380 hybrid contribution 0.955 1.722 -0.168 1.977 sum 12.868 -19.549 -0.182 23.405 Atomic orbital electron populations 1.69958 1.06030 1.26581 1.50876 1.25026 0.94848 0.99226 0.95357 0.86616 0.79863 0.83561 0.78101 1.20672 1.21176 1.19926 1.21256 0.92921 0.91199 1.50531 0.92922 1.19017 0.93855 0.91219 0.97189 1.22241 0.99999 0.95909 1.00254 1.22362 0.94541 0.88239 1.02524 1.62754 1.16899 1.44269 1.01782 1.21016 0.94130 0.96550 0.93437 1.22585 0.97827 0.97584 0.97107 1.19723 0.96744 0.96908 0.95750 1.19107 0.93405 0.93373 0.98292 1.21276 0.99382 0.92366 0.99642 1.21088 0.93338 0.99306 1.00137 1.21174 0.96841 0.96537 0.99976 1.21089 0.99195 0.93331 1.00208 1.21337 0.92366 0.99542 0.99700 1.20462 0.98732 0.97701 0.93798 1.22189 0.95139 0.95766 0.94701 0.92999 0.96631 0.96577 0.93238 0.93389 0.91051 0.90847 0.92434 0.89782 0.87326 0.85911 0.86137 0.86333 0.86129 0.85976 0.90386 0.91129 0.93822 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.15 -2.97 4.45 -26.73 -0.12 -3.09 16 11 C 0.05 0.87 5.34 -3.82 -0.02 0.85 16 12 N -0.53 -8.11 4.92 -236.03 -1.16 -9.27 16 13 C 0.08 1.07 5.48 -5.27 -0.03 1.04 16 14 C -0.13 -1.68 9.50 -36.40 -0.35 -2.02 16 15 C -0.09 -1.11 5.30 -102.72 -0.54 -1.66 16 16 C -0.04 -0.47 5.17 -105.01 -0.54 -1.01 16 17 C -0.11 -1.12 9.74 -39.19 -0.38 -1.50 16 18 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 19 C -0.13 -1.10 10.04 -39.50 -0.40 -1.49 16 20 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 21 C -0.11 -1.17 9.68 -39.20 -0.38 -1.55 16 22 C -0.07 -0.84 6.00 -27.95 -0.17 -1.01 16 23 C 0.05 0.71 4.66 -3.53 -0.02 0.69 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.01 6.66 -51.92 -0.35 0.67 16 28 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 29 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.88 6.22 -51.93 -0.32 0.56 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.11 1.24 7.98 -52.48 -0.42 0.82 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.67 6.99 -51.93 -0.36 0.30 16 42 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -30.52 339.70 -11.43 -41.96 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.82 Total: -1.38 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -4.29 Total: -26.89 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.42 Total: -35.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.52 -11.43 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002168158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.501 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds