Wall clock time and date at job start Mon Mar 30 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38346 * 119.85449 * 2 1 4 4 C 1.37979 * 120.14156 * 179.72093 * 3 2 1 5 5 C 1.39537 * 119.85527 * 0.25990 * 4 3 2 6 6 C 1.47805 * 120.14106 * 179.97438 * 5 4 3 7 7 C 1.31477 * 118.65913 * 64.73824 * 6 5 4 8 8 C 1.50171 * 123.05625 * 180.02562 * 7 6 5 9 9 N 1.46832 * 110.31612 * 343.40362 * 8 7 6 10 10 C 1.46899 * 110.99877 * 287.54192 * 9 8 7 11 11 C 1.52994 * 109.47433 * 293.00381 * 10 9 8 12 12 C 1.50694 * 109.47468 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99764 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00349 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99909 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00481 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46899 * 60.00356 * 16 14 12 18 18 H 1.48498 * 109.47071 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46965 * 300.00212 * 16 14 12 20 20 C 1.47222 * 110.25871 * 50.96901 * 9 8 7 21 21 C 1.50338 * 118.66351 * 245.00054 * 6 5 4 22 22 C 1.39535 * 119.71809 * 0.02562 * 5 4 3 23 23 C 1.37978 * 119.85473 * 359.97438 * 22 5 4 24 24 H 1.09001 * 109.47195 * 89.99535 * 1 2 3 25 25 H 1.09001 * 109.47262 * 209.99324 * 1 2 3 26 26 H 1.08995 * 109.47599 * 329.99840 * 1 2 3 27 27 H 1.08002 * 119.93265 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.07235 * 180.23562 * 4 3 2 29 29 H 1.07996 * 118.46973 * 0.31180 * 7 6 5 30 30 H 1.09007 * 109.47596 * 223.03825 * 8 7 6 31 31 H 1.09000 * 109.14217 * 103.55693 * 8 7 6 32 32 H 1.09005 * 109.47136 * 53.00373 * 10 9 8 33 33 H 1.09003 * 109.47085 * 172.99782 * 10 9 8 34 34 H 1.09005 * 109.46953 * 300.00104 * 11 10 9 35 35 H 1.08995 * 109.47149 * 59.99497 * 11 10 9 36 36 H 0.97003 * 120.00420 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.62265 * 170.99850 * 20 9 8 38 38 H 1.08995 * 109.78840 * 50.52204 * 20 9 8 39 39 H 1.08997 * 109.43187 * 283.54387 * 21 6 5 40 40 H 1.09008 * 109.42912 * 43.44496 * 21 6 5 41 41 H 1.07995 * 120.07270 * 179.97438 * 22 5 4 42 42 H 1.08001 * 119.92555 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1999 0.0000 4 6 3.5754 1.2068 0.0058 5 6 4.2761 0.0001 0.0062 6 6 5.7541 0.0001 0.0118 7 6 6.3807 0.4905 1.0585 8 6 7.8776 0.5400 1.1682 9 7 8.4910 -0.3582 0.1819 10 6 8.3041 -1.7646 0.5627 11 6 9.0996 -2.0583 1.8361 12 6 8.9073 -3.5008 2.2271 13 1 8.2807 -4.1440 1.6270 14 6 9.5321 -3.9999 3.3502 15 7 10.2955 -3.2168 4.0807 16 14 9.2944 -5.7883 3.8346 17 1 9.7743 -6.6662 2.7372 18 1 10.0664 -6.0732 5.0707 19 1 7.8530 -6.0469 4.0811 20 6 7.9398 -0.0966 -1.1580 21 6 6.4798 -0.5551 -1.1820 22 6 3.5755 -1.2066 0.0002 23 6 2.1958 -1.1997 -0.0056 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6522 2.1332 0.0004 28 1 4.1119 2.1441 0.0096 29 1 5.7914 0.8714 1.8795 30 1 8.1788 0.2352 2.1705 31 1 8.2157 1.5603 0.9868 32 1 7.2460 -1.9545 0.7433 33 1 8.6565 -2.4090 -0.2427 34 1 10.1576 -1.8683 1.6555 35 1 8.7471 -1.4138 2.6414 36 1 10.7349 -3.5677 4.8711 37 1 8.5103 -0.6511 -1.9032 38 1 7.9917 0.9700 -1.3765 39 1 6.4425 -1.6441 -1.1549 40 1 6.0023 -0.1984 -2.0947 41 1 4.1120 -2.1439 0.0000 42 1 1.6523 -2.1331 -0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053813600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:04 Heat of formation + Delta-G solvation = 27.415728 kcal Electronic energy + Delta-G solvation = -20220.580576 eV Core-core repulsion = 17357.751694 eV Total energy + Delta-G solvation = -2862.828882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84588 -38.61954 -34.43563 -33.05847 -31.36178 -31.04784 -30.57581 -29.38432 -26.73617 -24.98034 -23.56565 -22.71075 -22.19029 -21.35446 -20.10230 -17.36317 -16.70480 -16.15270 -15.37538 -15.31512 -14.79355 -14.54733 -14.27427 -14.07165 -13.95594 -13.64489 -13.45549 -13.21609 -12.49533 -12.28285 -12.21778 -12.08613 -11.91012 -11.80126 -11.25908 -11.14472 -11.07686 -11.00945 -10.85224 -10.54706 -10.38611 -9.78996 -9.33931 -9.10958 -8.96796 -8.86849 -8.31134 -8.18809 -7.68075 -5.96701 -3.98738 1.20513 1.39534 2.35708 3.34989 3.39289 3.41612 3.71836 4.40725 4.55095 4.76197 4.78577 4.90917 5.00108 5.10293 5.22252 5.35036 5.39080 5.39636 5.42958 5.49029 5.57807 5.66283 5.69913 5.79916 5.91723 6.02928 6.04458 6.07138 6.16965 6.20259 6.34874 6.44968 6.53403 6.55828 6.58574 6.76954 6.97486 7.02092 7.09406 7.53672 7.59804 7.82454 7.93925 8.11963 8.47270 9.08184 9.64552 11.14713 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.004334 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.945224 B = 6459.375854 C = 7428.836852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.108 4.108 5 C -0.043 4.043 6 C -0.100 4.100 7 C -0.155 4.155 8 C 0.076 3.924 9 N -0.529 5.529 10 C 0.059 3.941 11 C 0.029 3.971 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.053 3.947 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.119 4.119 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 9.257 -9.862 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.126 4.126 5 C -0.043 4.043 6 C -0.100 4.100 7 C -0.175 4.175 8 C -0.052 4.052 9 N -0.250 5.250 10 C -0.068 4.068 11 C -0.009 4.009 12 C -0.559 4.559 13 H 0.070 0.930 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.076 4.076 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.015 9.345 -9.711 20.176 hybrid contribution -1.102 -1.222 0.451 1.706 sum -16.117 8.124 -9.260 20.285 Atomic orbital electron populations 1.20773 0.91445 1.02619 1.02082 1.19932 0.95912 0.93240 1.00527 1.20920 0.94056 0.97343 1.01674 1.21251 0.93867 0.97299 1.00209 1.19062 0.92957 0.93027 0.99241 1.19615 0.91015 1.02436 0.96920 1.23322 0.98470 0.98788 0.96871 1.21195 0.88008 0.97327 0.98622 1.62784 1.54882 1.06438 1.00943 1.22368 0.98845 0.85359 1.00250 1.19086 0.95631 0.95819 0.90316 1.21147 1.29076 0.95933 1.09785 0.92959 1.24977 0.95225 0.97581 0.96457 1.69961 1.31272 1.35487 1.16568 0.86683 0.78142 0.85457 0.77862 1.20233 1.21269 1.20343 1.22224 0.91759 1.00844 0.92735 1.20975 0.97084 1.01186 0.95695 1.21306 0.93898 0.97762 0.99157 1.20965 0.94101 0.97448 1.01209 0.91398 0.91646 0.91723 0.86285 0.86125 0.87724 0.88342 0.90281 0.95423 0.92370 0.95851 0.96542 0.92979 0.90608 0.91302 0.90576 0.91302 0.85856 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.00 36.00 0.36 -0.54 16 2 C -0.10 -1.06 5.88 -104.55 -0.62 -1.67 16 3 C -0.12 -1.35 9.68 -39.64 -0.38 -1.74 16 4 C -0.11 -1.34 9.68 -39.19 -0.38 -1.72 16 5 C -0.04 -0.60 5.17 -105.02 -0.54 -1.14 16 6 C -0.10 -1.49 4.64 -102.72 -0.48 -1.97 16 7 C -0.15 -2.44 8.95 -36.40 -0.33 -2.76 16 8 C 0.08 1.29 5.83 -5.27 -0.03 1.26 16 9 N -0.53 -9.68 5.02 -236.15 -1.19 -10.86 16 10 C 0.06 1.25 3.95 -3.83 -0.02 1.23 16 11 C 0.03 0.76 4.94 -27.89 -0.14 0.62 16 12 C -0.52 -14.90 9.11 -34.45 -0.31 -15.21 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.05 0.79 6.01 -3.62 -0.02 0.76 16 21 C -0.11 -1.58 5.22 -28.03 -0.15 -1.73 16 22 C -0.10 -1.42 9.75 -39.19 -0.38 -1.80 16 23 C -0.12 -1.42 9.68 -39.64 -0.38 -1.81 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.10 1.58 7.98 -52.49 -0.42 1.16 16 30 H 0.10 1.88 6.06 -51.93 -0.31 1.57 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.60 6.03 -51.93 -0.31 0.28 16 33 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.45 6.36 -51.93 -0.33 0.12 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.08 1.16 7.14 -51.93 -0.37 0.79 16 40 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -30.71 338.01 -11.04 -41.75 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.77 Total: 0.13 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -3.89 Total: -26.61 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.45 Total: -37.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.71 -11.04 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053813600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.171 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds