Wall clock time and date at job start Mon Mar 30 2020 00:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47230 * 270.27664 * 3 2 1 5 5 H 1.48503 * 109.47072 * 30.27778 * 3 2 1 6 6 H 1.48502 * 109.47032 * 150.27380 * 3 2 1 7 7 C 1.37869 * 119.99878 * 180.27796 * 2 1 3 8 8 H 1.08001 * 119.99890 * 359.71820 * 7 2 1 9 9 C 1.50698 * 119.99907 * 179.72570 * 7 2 1 10 10 C 1.53009 * 109.47074 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47066 * 182.91081 * 10 9 7 12 12 C 1.46897 * 111.00489 * 287.59109 * 11 10 9 13 13 C 1.53002 * 117.50033 * 236.67147 * 12 11 10 14 14 C 1.52994 * 117.50213 * 168.00783 * 12 11 10 15 15 C 1.46898 * 110.99849 * 163.63282 * 11 10 9 16 16 H 1.09004 * 110.26845 * 166.55498 * 15 11 10 17 17 C 1.54343 * 110.30475 * 288.63363 * 15 11 10 18 18 C 1.54493 * 102.32550 * 145.20721 * 17 15 11 19 19 C 1.51367 * 105.21380 * 333.76872 * 18 17 15 20 20 C 1.38497 * 130.38982 * 197.09611 * 19 18 17 21 21 C 1.38109 * 120.21647 * 180.02562 * 20 19 18 22 22 C 1.38253 * 119.93370 * 0.02562 * 21 20 19 23 23 C 1.38100 * 119.93457 * 359.97438 * 22 21 20 24 24 C 1.38219 * 109.75913 * 17.12561 * 19 18 17 25 25 H 0.97002 * 119.99889 * 359.72359 * 1 2 3 26 26 H 1.08997 * 109.47176 * 299.99436 * 9 7 2 27 27 H 1.08994 * 109.47275 * 60.00041 * 9 7 2 28 28 H 1.08997 * 109.46941 * 302.91317 * 10 9 7 29 29 H 1.08998 * 109.46720 * 62.91431 * 10 9 7 30 30 H 1.09004 * 115.54951 * 22.34080 * 12 11 10 31 31 H 1.08998 * 117.49634 * 359.97438 * 13 12 11 32 32 H 1.08993 * 117.49912 * 145.01410 * 13 12 11 33 33 H 1.08998 * 117.49998 * 214.97615 * 14 12 11 34 34 H 1.09000 * 117.50066 * 359.97438 * 14 12 11 35 35 H 1.09005 * 110.82121 * 263.49024 * 17 15 11 36 36 H 1.08994 * 110.82382 * 27.04060 * 17 15 11 37 37 H 1.08998 * 110.33767 * 214.80223 * 18 17 15 38 38 H 1.08999 * 110.30534 * 92.71800 * 18 17 15 39 39 H 1.07998 * 119.88883 * 0.06055 * 20 19 18 40 40 H 1.07995 * 120.03352 * 180.02562 * 21 20 19 41 41 H 1.07995 * 120.03191 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.89224 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4908 2.0499 -1.4000 5 1 1.4495 2.6510 0.7059 6 1 3.5496 1.4385 0.6942 7 6 2.0045 -1.1940 -0.0058 8 1 1.4645 -2.1293 -0.0057 9 6 3.5115 -1.1940 -0.0120 10 6 4.0215 -2.6365 -0.0171 11 7 5.4891 -2.6373 0.0472 12 6 6.0721 -2.1984 -1.2277 13 6 7.0522 -3.1475 -1.9202 14 6 7.5670 -1.8732 -1.2461 15 6 5.9985 -3.9605 0.4313 16 1 7.0713 -4.0199 0.2477 17 6 5.6932 -4.2410 1.9180 18 6 5.4239 -5.7623 1.9180 19 6 4.9433 -6.0806 0.5184 20 6 4.2706 -7.1888 0.0308 21 6 3.9291 -7.2622 -1.3054 22 6 4.2598 -6.2269 -2.1599 23 6 4.9305 -5.1211 -1.6756 24 6 5.2735 -5.0454 -0.3358 25 1 -0.4850 0.8401 0.0041 26 1 3.8711 -0.6781 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 3.6197 -3.1669 0.8463 29 1 3.6976 -3.1332 -0.9317 30 1 5.4189 -1.5990 -1.8618 31 1 7.2647 -4.0973 -1.4296 32 1 7.0440 -3.1723 -3.0098 33 1 7.8973 -1.0602 -1.8926 34 1 8.1178 -1.9844 -0.3121 35 1 6.5529 -3.9982 2.5426 36 1 4.8096 -3.6915 2.2425 37 1 4.6536 -6.0107 2.6480 38 1 6.3414 -6.3089 2.1362 39 1 4.0119 -7.9978 0.6978 40 1 3.4043 -8.1275 -1.6824 41 1 3.9932 -6.2825 -3.2049 42 1 5.1881 -4.3126 -2.3437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067712343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:37 Heat of formation + Delta-G solvation = 62.153490 kcal Electronic energy + Delta-G solvation = -21315.380348 eV Core-core repulsion = 18454.057809 eV Total energy + Delta-G solvation = -2861.322539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69492 -37.91707 -35.47532 -33.97788 -32.39807 -30.96259 -29.47450 -28.73347 -26.28301 -24.08624 -22.69716 -22.27651 -21.46496 -20.79663 -20.48263 -18.73027 -16.94664 -16.42002 -15.95775 -15.49951 -15.00927 -14.87460 -14.35179 -14.14904 -13.42398 -13.22790 -13.11982 -12.63101 -12.56720 -12.39458 -12.25714 -11.90502 -11.47483 -11.38510 -11.23068 -11.14763 -11.01355 -10.75322 -10.57695 -10.48334 -10.09401 -9.87065 -9.73028 -9.66638 -9.17601 -8.61239 -8.49183 -8.41249 -7.68404 -6.00798 -3.98573 1.49025 1.54387 3.34230 3.41773 3.48780 3.83879 3.99870 4.25296 4.49566 4.54219 4.77777 5.01686 5.09792 5.11874 5.13409 5.24781 5.28911 5.33928 5.36430 5.43304 5.56734 5.65618 5.77090 5.78943 5.88573 5.99824 6.06935 6.12667 6.16137 6.19207 6.25847 6.30860 6.35569 6.44878 6.59505 6.66320 6.77987 6.85962 7.14745 7.19630 7.34791 7.61649 7.68328 7.88315 8.57473 9.04055 9.61999 11.12634 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.006149 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.296068 B = 4552.793258 C = 5107.807360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.005 4.005 10 C 0.072 3.928 11 N -0.498 5.498 12 C 0.031 3.969 13 C -0.223 4.223 14 C -0.176 4.176 15 C 0.117 3.883 16 H 0.092 0.908 17 C -0.112 4.112 18 C -0.082 4.082 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.097 4.097 24 C -0.115 4.115 25 H 0.262 0.738 26 H 0.009 0.991 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.519 -12.235 -1.043 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.043 4.043 10 C -0.054 4.054 11 N -0.218 5.218 12 C -0.079 4.079 13 C -0.262 4.262 14 C -0.214 4.214 15 C 0.008 3.992 16 H 0.110 0.890 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.094 4.094 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.115 4.115 24 C -0.116 4.116 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.484 -11.752 -0.648 18.663 hybrid contribution -0.016 0.306 -0.797 0.854 sum 14.468 -11.445 -1.445 18.504 Atomic orbital electron populations 1.69923 1.06310 1.26815 1.51342 1.24985 0.94681 0.99099 0.94558 0.86785 0.80601 0.83571 0.78448 1.20456 1.21488 1.18661 1.21082 0.89467 0.94424 1.50737 0.91216 1.19554 0.96280 0.91758 0.96683 1.22192 0.82818 1.00083 1.00295 1.62164 1.09369 1.23045 1.27228 1.22693 0.91655 1.01178 0.92331 1.23710 1.07297 0.95363 0.99836 1.23077 0.97691 0.98503 1.02177 1.21454 0.98292 0.85691 0.93751 0.88989 1.22427 1.03106 0.94437 0.95029 1.21085 1.00854 0.96594 0.93404 1.20560 0.98099 0.94520 0.96207 1.20562 0.99515 0.97557 0.95466 1.20983 1.00443 0.98896 0.93499 1.21036 0.99412 0.94161 0.99681 1.20912 0.98028 0.97939 0.94608 1.21259 0.99571 0.96941 0.93865 0.92806 0.97312 0.95776 0.91341 0.94681 0.86337 0.88164 0.89223 0.88964 0.88884 0.90470 0.89481 0.90669 0.90539 0.86638 0.86285 0.86228 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 -0.12 4.08 -27.88 -0.11 -0.24 16 10 C 0.07 1.49 3.65 -3.82 -0.01 1.47 16 11 N -0.50 -8.51 4.59 -218.87 -1.00 -9.51 16 12 C 0.03 0.48 4.88 -67.72 -0.33 0.15 16 13 C -0.22 -2.83 6.88 -26.69 -0.18 -3.01 16 14 C -0.18 -2.29 10.08 -26.69 -0.27 -2.56 16 15 C 0.12 1.68 2.33 -67.84 -0.16 1.53 16 16 H 0.09 1.23 5.84 -51.93 -0.30 0.93 16 17 C -0.11 -1.49 6.50 -25.24 -0.16 -1.65 16 18 C -0.08 -0.97 6.77 -26.77 -0.18 -1.15 16 19 C -0.09 -1.30 6.14 -104.21 -0.64 -1.94 16 20 C -0.11 -1.47 10.04 -39.53 -0.40 -1.86 16 21 C -0.12 -1.53 10.05 -39.62 -0.40 -1.92 16 22 C -0.12 -1.69 10.05 -39.63 -0.40 -2.09 16 23 C -0.10 -1.43 7.19 -39.53 -0.28 -1.71 16 24 C -0.11 -1.70 3.90 -104.20 -0.41 -2.10 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.01 0.21 6.39 -51.93 -0.33 -0.12 16 27 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 28 H 0.07 1.47 6.39 -51.93 -0.33 1.13 16 29 H 0.03 0.75 6.34 -51.93 -0.33 0.42 16 30 H 0.12 2.02 6.88 -51.93 -0.36 1.66 16 31 H 0.10 1.27 4.93 -51.93 -0.26 1.02 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.34 6.56 -51.93 -0.34 1.00 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.82 5.35 -52.48 -0.28 1.53 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -31.13 319.56 -10.74 -41.88 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.29 Total: 3.37 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -4.37 Total: -30.53 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.23 Total: -37.02 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.13 -10.74 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067712343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.033 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds