Wall clock time and date at job start Mon Mar 30 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47230 * 270.27664 * 3 2 1 5 5 H 1.48503 * 109.47072 * 30.27778 * 3 2 1 6 6 H 1.48502 * 109.47032 * 150.27380 * 3 2 1 7 7 C 1.37869 * 119.99878 * 180.27796 * 2 1 3 8 8 H 1.08001 * 119.99890 * 359.71820 * 7 2 1 9 9 C 1.50698 * 119.99907 * 179.72570 * 7 2 1 10 10 C 1.53009 * 109.47074 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47066 * 182.91081 * 10 9 7 12 12 C 1.46897 * 111.00489 * 287.59109 * 11 10 9 13 13 C 1.53002 * 117.50033 * 236.67147 * 12 11 10 14 14 C 1.52994 * 117.50213 * 168.00783 * 12 11 10 15 15 C 1.46898 * 110.99849 * 163.63282 * 11 10 9 16 16 H 1.09004 * 110.26845 * 166.55498 * 15 11 10 17 17 C 1.54343 * 110.30475 * 288.63363 * 15 11 10 18 18 C 1.54493 * 102.32550 * 145.20721 * 17 15 11 19 19 C 1.51367 * 105.21380 * 333.76872 * 18 17 15 20 20 C 1.38497 * 130.38982 * 197.09611 * 19 18 17 21 21 C 1.38109 * 120.21647 * 180.02562 * 20 19 18 22 22 C 1.38253 * 119.93370 * 0.02562 * 21 20 19 23 23 C 1.38100 * 119.93457 * 359.97438 * 22 21 20 24 24 C 1.38219 * 109.75913 * 17.12561 * 19 18 17 25 25 H 0.97002 * 119.99889 * 359.72359 * 1 2 3 26 26 H 1.08997 * 109.47176 * 299.99436 * 9 7 2 27 27 H 1.08994 * 109.47275 * 60.00041 * 9 7 2 28 28 H 1.08997 * 109.46941 * 302.91317 * 10 9 7 29 29 H 1.08998 * 109.46720 * 62.91431 * 10 9 7 30 30 H 1.09004 * 115.54951 * 22.34080 * 12 11 10 31 31 H 1.08998 * 117.49634 * 359.97438 * 13 12 11 32 32 H 1.08993 * 117.49912 * 145.01410 * 13 12 11 33 33 H 1.08998 * 117.49998 * 214.97615 * 14 12 11 34 34 H 1.09000 * 117.50066 * 359.97438 * 14 12 11 35 35 H 1.09005 * 110.82121 * 263.49024 * 17 15 11 36 36 H 1.08994 * 110.82382 * 27.04060 * 17 15 11 37 37 H 1.08998 * 110.33767 * 214.80223 * 18 17 15 38 38 H 1.08999 * 110.30534 * 92.71800 * 18 17 15 39 39 H 1.07998 * 119.88883 * 0.06055 * 20 19 18 40 40 H 1.07995 * 120.03352 * 180.02562 * 21 20 19 41 41 H 1.07995 * 120.03191 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.89224 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4908 2.0499 -1.4000 5 1 1.4495 2.6510 0.7059 6 1 3.5496 1.4385 0.6942 7 6 2.0045 -1.1940 -0.0058 8 1 1.4645 -2.1293 -0.0057 9 6 3.5115 -1.1940 -0.0120 10 6 4.0215 -2.6365 -0.0171 11 7 5.4891 -2.6373 0.0472 12 6 6.0721 -2.1984 -1.2277 13 6 7.0522 -3.1475 -1.9202 14 6 7.5670 -1.8732 -1.2461 15 6 5.9985 -3.9605 0.4313 16 1 7.0713 -4.0199 0.2477 17 6 5.6932 -4.2410 1.9180 18 6 5.4239 -5.7623 1.9180 19 6 4.9433 -6.0806 0.5184 20 6 4.2706 -7.1888 0.0308 21 6 3.9291 -7.2622 -1.3054 22 6 4.2598 -6.2269 -2.1599 23 6 4.9305 -5.1211 -1.6756 24 6 5.2735 -5.0454 -0.3358 25 1 -0.4850 0.8401 0.0041 26 1 3.8711 -0.6781 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 3.6197 -3.1669 0.8463 29 1 3.6976 -3.1332 -0.9317 30 1 5.4189 -1.5990 -1.8618 31 1 7.2647 -4.0973 -1.4296 32 1 7.0440 -3.1723 -3.0098 33 1 7.8973 -1.0602 -1.8926 34 1 8.1178 -1.9844 -0.3121 35 1 6.5529 -3.9982 2.5426 36 1 4.8096 -3.6915 2.2425 37 1 4.6536 -6.0107 2.6480 38 1 6.3414 -6.3089 2.1362 39 1 4.0119 -7.9978 0.6978 40 1 3.4043 -8.1275 -1.6824 41 1 3.9932 -6.2825 -3.2049 42 1 5.1881 -4.3126 -2.3437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067712343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:36 Heat of formation + Delta-G solvation = 44.669835 kcal Electronic energy + Delta-G solvation = -21316.138496 eV Core-core repulsion = 18454.057809 eV Total energy + Delta-G solvation = -2862.080688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80346 -39.04794 -36.53199 -35.74510 -34.20348 -32.28397 -31.01531 -29.78912 -27.63789 -25.77811 -23.74143 -23.30962 -22.87549 -22.28138 -21.55781 -20.02076 -18.99681 -17.70019 -17.16434 -16.68211 -16.20592 -16.11778 -15.90787 -15.50493 -14.91172 -14.75527 -14.34078 -14.23695 -13.78900 -13.63604 -13.59242 -13.25604 -12.96367 -12.72699 -12.47870 -12.35890 -12.16319 -11.99862 -11.86060 -11.73828 -11.73110 -11.50306 -11.41470 -11.31072 -11.08905 -10.76433 -9.66395 -9.47820 -8.96921 -8.30841 -6.34895 0.45137 0.49900 1.34126 1.36652 1.50506 2.35492 2.71238 2.89481 3.04673 3.10334 3.52520 3.73606 3.89804 4.03523 4.06109 4.14880 4.18354 4.25267 4.30758 4.39115 4.44733 4.59026 4.65496 4.70047 4.76564 4.81557 4.87736 4.93751 4.97766 5.06703 5.11467 5.16612 5.24639 5.29086 5.30001 5.33002 5.48766 5.56894 5.62506 5.63822 5.72751 6.13801 6.17113 6.25274 6.32646 6.72303 7.29773 8.86083 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.006149 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.296068 B = 4552.793258 C = 5107.807360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.027 0.973 9 C 0.005 3.995 10 C 0.095 3.905 11 N -0.500 5.500 12 C -0.004 4.004 13 C -0.201 4.201 14 C -0.159 4.159 15 C 0.117 3.883 16 H 0.109 0.891 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.139 4.139 23 C -0.115 4.115 24 C -0.133 4.133 25 H 0.267 0.733 26 H 0.014 0.986 27 H 0.020 0.980 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -12.473 -0.954 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.033 4.033 10 C -0.033 4.033 11 N -0.221 5.221 12 C -0.113 4.113 13 C -0.240 4.240 14 C -0.197 4.197 15 C 0.009 3.991 16 H 0.126 0.874 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.133 4.133 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.032 -12.007 -0.565 20.847 hybrid contribution -0.865 0.277 -0.856 1.248 sum 16.167 -11.731 -1.421 20.025 Atomic orbital electron populations 1.70070 1.08250 1.28172 1.52610 1.25954 0.95572 1.03371 0.93971 0.85644 0.79514 0.78233 0.79197 1.19162 1.20728 1.17223 1.21373 0.91935 0.92997 1.50587 0.95442 1.19398 0.93187 0.94358 0.96389 1.21702 0.85669 0.97053 0.98831 1.62100 1.06638 1.24948 1.28375 1.22668 0.92862 1.03485 0.92264 1.23668 1.04657 0.95227 1.00413 1.23165 0.94896 0.98934 1.02665 1.21572 0.98927 0.84253 0.94336 0.87377 1.22447 1.02766 0.95278 0.94584 1.21102 1.02146 0.95626 0.92389 1.20924 0.98153 0.94636 0.97103 1.20916 0.98976 0.97984 0.96055 1.21344 0.99948 0.99397 0.93469 1.21327 0.99337 0.94181 1.00805 1.21024 0.98994 0.98404 0.94862 1.21359 1.00447 0.97519 0.94127 0.92444 0.96818 0.96185 0.92886 0.96161 0.88435 0.87890 0.88061 0.87504 0.88159 0.88218 0.92287 0.90149 0.87949 0.84384 0.83786 0.84754 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.44 0.30 -60.72 16 2 C 0.01 0.49 5.47 84.65 0.46 0.96 16 3 Si 0.95 45.85 27.47 68.60 1.88 47.73 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 7 C -0.53 -31.90 9.66 25.60 0.25 -31.65 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C 0.00 0.22 4.08 29.85 0.12 0.35 16 10 C 0.09 4.03 3.65 86.31 0.31 4.34 16 11 N -0.50 -16.93 4.59 -846.37 -3.89 -20.81 16 12 C 0.00 -0.11 4.88 44.91 0.22 0.11 16 13 C -0.20 -4.72 6.88 30.62 0.21 -4.51 16 14 C -0.16 -3.72 10.08 30.62 0.31 -3.41 16 15 C 0.12 3.25 2.33 44.84 0.10 3.36 16 16 H 0.11 2.64 5.84 -2.38 -0.01 2.63 16 17 C -0.11 -2.87 6.50 31.56 0.21 -2.66 16 18 C -0.08 -1.65 6.77 30.57 0.21 -1.45 16 19 C -0.11 -2.87 6.14 -19.59 -0.12 -2.99 16 20 C -0.12 -2.97 10.04 22.30 0.22 -2.74 16 21 C -0.12 -2.97 10.05 22.24 0.22 -2.75 16 22 C -0.14 -3.67 10.05 22.24 0.22 -3.45 16 23 C -0.11 -3.37 7.19 22.30 0.16 -3.21 16 24 C -0.13 -3.86 3.90 -19.59 -0.08 -3.94 16 25 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.01 0.66 6.39 -2.39 -0.02 0.65 16 27 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 28 H 0.05 2.38 6.39 -2.39 -0.02 2.36 16 29 H 0.02 0.90 6.34 -2.39 -0.02 0.89 16 30 H 0.10 3.34 6.88 -2.38 -0.02 3.33 16 31 H 0.10 2.40 4.93 -2.39 -0.01 2.38 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.10 2.23 8.08 -2.39 -0.02 2.21 16 35 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.06 1.83 6.56 -2.39 -0.02 1.82 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.12 3.50 5.35 -2.91 -0.02 3.49 16 Total: -1.00 -68.94 319.56 2.28 -66.66 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.95 Total: 20.78 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 3.04 Total: -53.64 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.59 Total: -81.54 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -68.94 2.28 -66.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067712343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.331 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds