Wall clock time and date at job start Mon Mar 30 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99578 * 2 1 4 4 H 1.48502 * 109.47042 * 270.00256 * 3 2 1 5 5 H 1.48492 * 109.47117 * 30.00236 * 3 2 1 6 6 H 1.48500 * 109.46905 * 150.00680 * 3 2 1 7 7 C 1.37873 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99860 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46878 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46843 * 177.17713 * 10 9 7 12 12 C 1.46903 * 111.00000 * 61.74513 * 11 10 9 13 13 C 1.52998 * 117.49480 * 117.12048 * 12 11 10 14 14 C 1.53005 * 117.49743 * 48.46476 * 12 11 10 15 15 C 1.46900 * 110.99750 * 297.79118 * 11 10 9 16 16 H 1.09001 * 110.27135 * 71.51237 * 15 11 10 17 17 C 1.54341 * 110.30474 * 309.43210 * 15 11 10 18 18 C 1.54349 * 102.38851 * 214.72917 * 17 15 11 19 19 C 1.51365 * 105.17336 * 26.34744 * 18 17 15 20 20 C 1.38497 * 130.39575 * 162.79071 * 19 18 17 21 21 C 1.38107 * 120.21668 * 180.02562 * 20 19 18 22 22 C 1.38248 * 119.93412 * 0.02562 * 21 20 19 23 23 C 1.38102 * 119.93595 * 359.97438 * 22 21 20 24 24 C 1.38213 * 109.75794 * 342.81747 * 19 18 17 25 25 H 0.97000 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47621 * 59.99619 * 9 7 2 27 27 H 1.09004 * 109.47070 * 299.99195 * 9 7 2 28 28 H 1.09002 * 109.46816 * 297.17382 * 10 9 7 29 29 H 1.08995 * 109.47062 * 57.18108 * 10 9 7 30 30 H 1.08998 * 115.54864 * 262.79674 * 12 11 10 31 31 H 1.08995 * 117.50293 * 0.02562 * 13 12 11 32 32 H 1.09007 * 117.49355 * 145.01905 * 13 12 11 33 33 H 1.09002 * 117.49562 * 214.98028 * 14 12 11 34 34 H 1.08996 * 117.49604 * 359.97438 * 14 12 11 35 35 H 1.09000 * 110.82432 * 332.95080 * 17 15 11 36 36 H 1.09001 * 110.82552 * 96.30935 * 17 15 11 37 37 H 1.09005 * 110.30280 * 145.26857 * 18 17 15 38 38 H 1.08996 * 110.30307 * 267.32085 * 18 17 15 39 39 H 1.08007 * 119.89297 * 0.03146 * 20 19 18 40 40 H 1.08000 * 120.03358 * 180.02562 * 21 20 19 41 41 H 1.08006 * 120.03142 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.89172 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 7 5.4892 -2.6369 -0.0677 12 6 6.0704 -1.9683 1.1041 13 6 6.9447 -2.8098 2.0360 14 6 5.5462 -2.3763 2.4825 15 6 5.9588 -2.0173 -1.3141 16 1 5.7929 -0.9404 -1.2864 17 6 5.2356 -2.6397 -2.5273 18 6 6.3345 -2.6254 -3.6110 19 6 7.6421 -2.6685 -2.8499 20 6 8.9198 -2.9886 -3.2781 21 6 9.9778 -2.9596 -2.3909 22 6 9.7618 -2.6107 -1.0708 23 6 8.4885 -2.2913 -0.6418 24 6 7.4263 -2.3193 -1.5301 25 1 -0.4851 0.8400 0.0004 26 1 3.8746 -0.6806 0.8904 27 1 3.8752 -0.6795 -0.8896 28 1 3.6999 -3.1356 0.9140 29 1 3.6180 -3.1644 -0.8639 30 1 6.3479 -0.9242 0.9601 31 1 7.0890 -3.8592 1.7794 32 1 7.7974 -2.3190 2.5053 33 1 5.4793 -1.6005 3.2453 34 1 4.7698 -3.1404 2.5196 35 1 4.9201 -3.6599 -2.3088 36 1 4.3842 -2.0283 -2.8264 37 1 6.2425 -3.5005 -4.2545 38 1 6.2698 -1.7127 -4.2033 39 1 9.0893 -3.2616 -4.3093 40 1 10.9730 -3.2093 -2.7281 41 1 10.5882 -2.5872 -0.3757 42 1 8.3205 -2.0192 0.3898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067712344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:39 Heat of formation + Delta-G solvation = 55.306586 kcal Electronic energy + Delta-G solvation = -21178.169552 eV Core-core repulsion = 18316.550108 eV Total energy + Delta-G solvation = -2861.619443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29947 -38.03112 -35.71738 -33.77949 -32.43779 -31.13779 -29.27008 -28.71055 -26.10474 -24.38140 -22.69334 -21.89773 -21.62781 -20.83506 -20.26692 -18.70136 -16.93636 -16.49094 -16.16285 -15.26838 -15.01722 -14.54736 -14.46526 -14.24045 -13.56713 -13.30251 -13.00142 -12.73956 -12.53682 -12.46381 -12.33674 -11.80646 -11.36417 -11.27545 -11.26493 -10.98051 -10.96038 -10.84951 -10.52233 -10.46705 -10.01653 -9.95874 -9.76021 -9.72017 -9.24499 -8.67227 -8.57013 -8.41299 -7.65907 -6.07826 -4.05578 1.48080 1.53224 3.25595 3.33988 3.36712 3.84718 4.09831 4.33260 4.41167 4.58614 4.74006 5.07492 5.11638 5.17994 5.25590 5.26530 5.31703 5.37518 5.48190 5.55703 5.63758 5.73175 5.84758 5.88788 5.89385 5.97777 6.13569 6.18356 6.21500 6.23446 6.30996 6.41278 6.45924 6.48396 6.57560 6.63709 6.71963 6.85631 7.11586 7.19263 7.23799 7.46261 7.66524 7.83496 8.50121 8.97406 9.55187 11.05614 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.005782 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.587811 B = 4841.852075 C = 5456.948259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.041 4.041 10 C 0.063 3.937 11 N -0.504 5.504 12 C 0.019 3.981 13 C -0.175 4.175 14 C -0.173 4.173 15 C 0.123 3.877 16 H 0.061 0.939 17 C -0.113 4.113 18 C -0.081 4.081 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.099 4.099 24 C -0.071 4.071 25 H 0.263 0.737 26 H 0.017 0.983 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.331 -5.156 -3.058 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.079 4.079 10 C -0.063 4.063 11 N -0.227 5.227 12 C -0.090 4.090 13 C -0.213 4.213 14 C -0.210 4.210 15 C 0.015 3.985 16 H 0.079 0.921 17 C -0.151 4.151 18 C -0.119 4.119 19 C -0.095 4.095 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.117 4.117 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.307 -5.538 -3.057 19.369 hybrid contribution 0.103 1.880 0.053 1.884 sum 18.410 -3.658 -3.004 19.009 Atomic orbital electron populations 1.69910 1.06241 1.26828 1.51170 1.25000 0.94643 0.98971 0.94601 0.86838 0.80365 0.83988 0.78448 1.20374 1.21352 1.19254 1.21032 0.89251 0.94425 1.50704 0.90940 1.20134 0.97823 0.93781 0.96204 1.22276 0.83312 0.98696 1.02027 1.62282 1.09468 1.51563 0.99345 1.22291 1.03016 0.95368 0.88310 1.23133 0.93708 1.01040 1.03371 1.23094 0.97288 1.03710 0.96932 1.21130 0.89597 0.97244 0.90534 0.92141 1.22443 0.97303 1.02586 0.92777 1.21058 0.90893 1.02244 0.97670 1.20595 0.94630 0.99039 0.95244 1.20543 0.91652 1.01553 0.99427 1.20949 0.98373 1.01313 0.93800 1.21007 0.96685 1.01024 0.95917 1.20936 0.91562 0.99312 0.99920 1.20536 0.94921 0.97972 0.93690 0.92752 0.96450 0.97246 0.91159 0.90896 0.89716 0.88535 0.89511 0.89107 0.88116 0.89793 0.89768 0.90771 0.90381 0.86679 0.86452 0.86418 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.04 -0.95 3.51 -27.88 -0.10 -1.04 16 10 C 0.06 1.23 4.63 -3.82 -0.02 1.22 16 11 N -0.50 -8.59 4.72 -218.85 -1.03 -9.62 16 12 C 0.02 0.31 2.44 -67.71 -0.17 0.14 16 13 C -0.17 -2.31 8.54 -26.70 -0.23 -2.54 16 14 C -0.17 -2.59 9.64 -26.69 -0.26 -2.85 16 15 C 0.12 2.02 1.86 -67.83 -0.13 1.89 16 16 H 0.06 1.09 6.89 -51.93 -0.36 0.74 16 17 C -0.11 -1.71 5.27 -25.32 -0.13 -1.84 16 18 C -0.08 -1.04 6.77 -26.85 -0.18 -1.22 16 19 C -0.09 -1.30 6.14 -104.21 -0.64 -1.94 16 20 C -0.11 -1.38 10.04 -39.53 -0.40 -1.77 16 21 C -0.13 -1.43 10.05 -39.63 -0.40 -1.83 16 22 C -0.13 -1.53 10.05 -39.63 -0.40 -1.93 16 23 C -0.10 -1.37 9.24 -39.54 -0.37 -1.73 16 24 C -0.07 -1.06 5.76 -104.20 -0.60 -1.66 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.41 6.34 -51.93 -0.33 0.09 16 27 H 0.01 0.22 6.01 -51.93 -0.31 -0.09 16 28 H 0.07 1.40 6.47 -51.93 -0.34 1.06 16 29 H 0.07 1.43 6.37 -51.93 -0.33 1.10 16 30 H 0.09 1.41 7.96 -51.93 -0.41 0.99 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 0.98 8.05 -51.92 -0.42 0.57 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.59 6.81 -51.93 -0.35 1.23 16 35 H 0.08 1.28 7.34 -51.93 -0.38 0.89 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.13 1.68 4.70 -52.48 -0.25 1.43 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -30.10 324.07 -10.93 -41.02 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.45 Total: 3.40 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -4.44 Total: -29.92 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.26 Total: -36.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.10 -10.93 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067712344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.331 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds