Wall clock time and date at job start Mon Mar 30 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99578 * 2 1 4 4 H 1.48502 * 109.47042 * 270.00256 * 3 2 1 5 5 H 1.48492 * 109.47117 * 30.00236 * 3 2 1 6 6 H 1.48500 * 109.46905 * 150.00680 * 3 2 1 7 7 C 1.37873 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99860 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46878 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46843 * 177.17713 * 10 9 7 12 12 C 1.46903 * 111.00000 * 61.74513 * 11 10 9 13 13 C 1.52998 * 117.49480 * 117.12048 * 12 11 10 14 14 C 1.53005 * 117.49743 * 48.46476 * 12 11 10 15 15 C 1.46900 * 110.99750 * 297.79118 * 11 10 9 16 16 H 1.09001 * 110.27135 * 71.51237 * 15 11 10 17 17 C 1.54341 * 110.30474 * 309.43210 * 15 11 10 18 18 C 1.54349 * 102.38851 * 214.72917 * 17 15 11 19 19 C 1.51365 * 105.17336 * 26.34744 * 18 17 15 20 20 C 1.38497 * 130.39575 * 162.79071 * 19 18 17 21 21 C 1.38107 * 120.21668 * 180.02562 * 20 19 18 22 22 C 1.38248 * 119.93412 * 0.02562 * 21 20 19 23 23 C 1.38102 * 119.93595 * 359.97438 * 22 21 20 24 24 C 1.38213 * 109.75794 * 342.81747 * 19 18 17 25 25 H 0.97000 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47621 * 59.99619 * 9 7 2 27 27 H 1.09004 * 109.47070 * 299.99195 * 9 7 2 28 28 H 1.09002 * 109.46816 * 297.17382 * 10 9 7 29 29 H 1.08995 * 109.47062 * 57.18108 * 10 9 7 30 30 H 1.08998 * 115.54864 * 262.79674 * 12 11 10 31 31 H 1.08995 * 117.50293 * 0.02562 * 13 12 11 32 32 H 1.09007 * 117.49355 * 145.01905 * 13 12 11 33 33 H 1.09002 * 117.49562 * 214.98028 * 14 12 11 34 34 H 1.08996 * 117.49604 * 359.97438 * 14 12 11 35 35 H 1.09000 * 110.82432 * 332.95080 * 17 15 11 36 36 H 1.09001 * 110.82552 * 96.30935 * 17 15 11 37 37 H 1.09005 * 110.30280 * 145.26857 * 18 17 15 38 38 H 1.08996 * 110.30307 * 267.32085 * 18 17 15 39 39 H 1.08007 * 119.89297 * 0.03146 * 20 19 18 40 40 H 1.08000 * 120.03358 * 180.02562 * 21 20 19 41 41 H 1.08006 * 120.03142 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.89172 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 7 5.4892 -2.6369 -0.0677 12 6 6.0704 -1.9683 1.1041 13 6 6.9447 -2.8098 2.0360 14 6 5.5462 -2.3763 2.4825 15 6 5.9588 -2.0173 -1.3141 16 1 5.7929 -0.9404 -1.2864 17 6 5.2356 -2.6397 -2.5273 18 6 6.3345 -2.6254 -3.6110 19 6 7.6421 -2.6685 -2.8499 20 6 8.9198 -2.9886 -3.2781 21 6 9.9778 -2.9596 -2.3909 22 6 9.7618 -2.6107 -1.0708 23 6 8.4885 -2.2913 -0.6418 24 6 7.4263 -2.3193 -1.5301 25 1 -0.4851 0.8400 0.0004 26 1 3.8746 -0.6806 0.8904 27 1 3.8752 -0.6795 -0.8896 28 1 3.6999 -3.1356 0.9140 29 1 3.6180 -3.1644 -0.8639 30 1 6.3479 -0.9242 0.9601 31 1 7.0890 -3.8592 1.7794 32 1 7.7974 -2.3190 2.5053 33 1 5.4793 -1.6005 3.2453 34 1 4.7698 -3.1404 2.5196 35 1 4.9201 -3.6599 -2.3088 36 1 4.3842 -2.0283 -2.8264 37 1 6.2425 -3.5005 -4.2545 38 1 6.2698 -1.7127 -4.2033 39 1 9.0893 -3.2616 -4.3093 40 1 10.9730 -3.2093 -2.7281 41 1 10.5882 -2.5872 -0.3757 42 1 8.3205 -2.0192 0.3898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067712344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:39 Heat of formation + Delta-G solvation = 38.944036 kcal Electronic energy + Delta-G solvation = -21178.879085 eV Core-core repulsion = 18316.550108 eV Total energy + Delta-G solvation = -2862.328977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41031 -39.24121 -36.82968 -35.48797 -34.16308 -32.36250 -30.88221 -29.73922 -27.47290 -25.94674 -23.74065 -23.49744 -22.89333 -21.93343 -21.36021 -20.13445 -19.04430 -17.69905 -17.32433 -16.48837 -16.31992 -15.98851 -15.74935 -15.51152 -15.00475 -14.76018 -14.54083 -13.98620 -13.85389 -13.78452 -13.53783 -13.36994 -12.91933 -12.62798 -12.50624 -12.39630 -12.20116 -11.99972 -11.93215 -11.89258 -11.61885 -11.53479 -11.41728 -11.13273 -10.98409 -10.78876 -9.63566 -9.43215 -9.06215 -8.32799 -6.35589 0.51992 0.58298 1.27310 1.29266 1.40097 2.29739 2.76370 2.94090 3.02404 3.12621 3.55312 3.61967 4.00829 4.04316 4.09988 4.21249 4.23317 4.30649 4.35609 4.42211 4.44439 4.56719 4.61486 4.75265 4.81010 4.81947 4.88209 4.93694 4.95282 5.04462 5.08252 5.18556 5.21944 5.32777 5.34524 5.41182 5.42027 5.53964 5.63861 5.69883 5.86069 6.05639 6.20738 6.28485 6.31798 6.72732 7.28685 8.83861 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.005782 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.587811 B = 4841.852075 C = 5456.948259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.522 4.522 8 H 0.036 0.964 9 C -0.027 4.027 10 C 0.075 3.925 11 N -0.497 5.497 12 C -0.004 4.004 13 C -0.140 4.140 14 C -0.183 4.183 15 C 0.121 3.879 16 H 0.037 0.963 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.112 4.112 24 C -0.095 4.095 25 H 0.266 0.734 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.916 -5.043 -3.408 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.561 4.561 8 H 0.055 0.945 9 C -0.066 4.066 10 C -0.052 4.052 11 N -0.219 5.219 12 C -0.113 4.113 13 C -0.178 4.178 14 C -0.220 4.220 15 C 0.013 3.987 16 H 0.054 0.946 17 C -0.153 4.153 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.130 4.130 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 21.915 -5.438 -3.405 22.834 hybrid contribution -0.997 1.767 0.163 2.035 sum 20.917 -3.671 -3.242 21.483 Atomic orbital electron populations 1.70051 1.08048 1.28003 1.52752 1.25869 0.95437 1.02905 0.94312 0.85792 0.79374 0.79255 0.79040 1.19356 1.20727 1.17951 1.21344 0.91674 0.93128 1.49949 0.94518 1.19980 0.94588 0.96243 0.95757 1.22016 0.85523 0.96142 1.01489 1.62338 1.07178 1.51939 1.00430 1.22387 1.05043 0.95655 0.88203 1.23141 0.93414 1.00689 1.00519 1.23134 0.98484 1.03851 0.96550 1.21135 0.91406 0.95783 0.90347 0.94555 1.22399 0.97630 1.01684 0.93569 1.21013 0.89726 1.03443 0.96990 1.20761 0.95611 0.99569 0.94830 1.20871 0.90990 1.00804 1.00877 1.21370 0.99590 0.99675 0.93363 1.21345 0.96540 0.99988 0.96869 1.21077 0.92151 0.99858 0.99914 1.20470 0.94026 1.00170 0.94908 0.92510 0.96808 0.97191 0.91762 0.91411 0.90465 0.88500 0.86772 0.88313 0.89362 0.90337 0.91410 0.88992 0.89664 0.84351 0.83361 0.83834 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.01 0.70 5.47 84.65 0.46 1.17 16 3 Si 0.94 45.26 27.47 68.60 1.88 47.14 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 7 C -0.52 -30.18 9.66 25.60 0.25 -29.93 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.03 -1.28 3.51 29.85 0.10 -1.17 16 10 C 0.08 3.05 4.63 86.30 0.40 3.45 16 11 N -0.50 -17.04 4.72 -846.31 -3.99 -21.04 16 12 C 0.00 -0.12 2.44 44.92 0.11 -0.01 16 13 C -0.14 -3.42 8.54 30.62 0.26 -3.16 16 14 C -0.18 -5.35 9.64 30.62 0.30 -5.05 16 15 C 0.12 4.00 1.86 44.84 0.08 4.09 16 16 H 0.04 1.35 6.89 -2.39 -0.02 1.34 16 17 C -0.12 -3.52 5.27 31.51 0.17 -3.35 16 18 C -0.07 -1.82 6.77 30.52 0.21 -1.62 16 19 C -0.11 -2.76 6.14 -19.60 -0.12 -2.88 16 20 C -0.12 -2.46 10.04 22.30 0.22 -2.24 16 21 C -0.12 -2.28 10.05 22.24 0.22 -2.06 16 22 C -0.13 -2.64 10.05 22.24 0.22 -2.42 16 23 C -0.11 -2.85 9.24 22.30 0.21 -2.64 16 24 C -0.10 -2.76 5.76 -19.59 -0.11 -2.87 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.01 0.66 6.34 -2.39 -0.02 0.64 16 27 H 0.01 0.47 6.01 -2.39 -0.01 0.46 16 28 H 0.06 2.65 6.47 -2.39 -0.02 2.63 16 29 H 0.07 2.78 6.37 -2.39 -0.02 2.76 16 30 H 0.08 2.53 7.96 -2.39 -0.02 2.52 16 31 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.11 2.19 8.05 -2.38 -0.02 2.17 16 33 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.09 2.80 6.81 -2.39 -0.02 2.78 16 35 H 0.08 2.44 7.34 -2.39 -0.02 2.42 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.13 3.10 4.70 -2.91 -0.01 3.08 16 Total: -1.00 -66.22 324.07 2.11 -64.10 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.94 Total: 19.85 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 2.98 Total: -50.69 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.69 Total: -80.41 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -66.22 2.11 -64.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067712344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.048 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds