Wall clock time and date at job start Mon Mar 30 2020 00:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00346 * 2 1 4 4 O 1.20826 * 119.99416 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00251 * 179.97438 * 3 2 1 6 6 N 1.46897 * 109.47157 * 173.59951 * 5 3 2 7 7 C 1.46894 * 111.00106 * 163.20983 * 6 5 3 8 8 C 1.53003 * 109.47273 * 196.06329 * 7 6 5 9 9 C 1.50700 * 109.46991 * 173.08109 * 8 7 6 10 10 H 1.07994 * 120.00255 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99858 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00113 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99779 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47158 * 90.00447 * 13 11 9 15 15 H 1.48506 * 109.47191 * 210.00237 * 13 11 9 16 16 H 1.48493 * 109.47420 * 330.00421 * 13 11 9 17 17 C 1.46903 * 110.99919 * 287.16561 * 6 5 3 18 18 C 1.53180 * 109.54179 * 149.93850 * 17 6 5 19 19 C 1.53100 * 109.16035 * 176.84823 * 18 17 6 20 20 O 1.42903 * 109.41208 * 302.39246 * 19 18 17 21 21 C 1.42901 * 114.10029 * 61.15710 * 20 19 18 22 22 C 1.53092 * 109.41540 * 298.84072 * 21 20 19 23 23 H 1.08993 * 109.47483 * 300.00716 * 1 2 3 24 24 H 1.08999 * 109.46766 * 60.00957 * 1 2 3 25 25 H 1.09003 * 109.47369 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47239 * 53.59309 * 5 3 2 27 27 H 1.09001 * 109.46813 * 293.59348 * 5 3 2 28 28 H 1.08997 * 109.47376 * 316.06227 * 7 6 5 29 29 H 1.09002 * 109.47383 * 76.06273 * 7 6 5 30 30 H 1.08998 * 109.47192 * 293.08011 * 8 7 6 31 31 H 1.09002 * 109.47225 * 53.08387 * 8 7 6 32 32 H 0.97001 * 120.00030 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.61376 * 29.71747 * 17 6 5 34 34 H 1.09000 * 109.52271 * 296.74868 * 18 17 6 35 35 H 1.08997 * 109.52366 * 56.94266 * 18 17 6 36 36 H 1.08999 * 109.47557 * 182.40655 * 19 18 17 37 37 H 1.09001 * 109.48173 * 62.37215 * 19 18 17 38 38 H 1.09002 * 109.47802 * 178.86073 * 21 20 19 39 39 H 1.09004 * 109.48950 * 58.83207 * 21 20 19 40 40 H 1.08996 * 109.52054 * 297.70126 * 22 21 20 41 41 H 1.08997 * 109.51822 * 177.51515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9834 2.6748 -0.1539 7 6 5.3892 2.8512 0.2337 8 6 5.6767 4.3388 0.4471 9 6 7.0656 4.5066 1.0073 10 1 7.6815 3.6392 1.1929 11 6 7.5497 5.7678 1.2837 12 7 8.7619 5.9143 1.7721 13 14 6.4841 7.2682 0.9633 14 1 5.6877 7.5783 2.1777 15 1 7.3495 8.4279 0.6294 16 1 5.5678 6.9913 -0.1720 17 6 3.7529 3.1444 -1.5267 18 6 3.4639 4.6486 -1.5120 19 6 3.3031 5.1434 -2.9519 20 8 4.4875 4.8424 -3.6926 21 6 4.7820 3.4469 -3.7803 22 6 5.0022 2.8839 -2.3738 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.9614 0.6846 -0.8262 27 1 3.9503 0.8832 0.9426 28 1 5.5821 2.3076 1.1586 29 1 6.0349 2.4660 -0.5555 30 1 5.6033 4.8633 -0.5055 31 1 4.9504 4.7525 1.1467 32 1 9.1026 6.8016 1.9662 33 1 2.9034 2.6140 -1.9570 34 1 2.5449 4.8375 -0.9572 35 1 4.2921 5.1740 -1.0366 36 1 3.1396 6.2211 -2.9496 37 1 2.4495 4.6471 -3.4137 38 1 5.6840 3.3024 -4.3750 39 1 3.9479 2.9282 -4.2531 40 1 5.8615 3.3737 -1.9159 41 1 5.1834 1.8108 -2.4353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076117977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:24 Heat of formation + Delta-G solvation = -112.603792 kcal Electronic energy + Delta-G solvation = -22409.051612 eV Core-core repulsion = 19097.009014 eV Total energy + Delta-G solvation = -3312.042598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58035 -39.52488 -37.16954 -36.16092 -33.06660 -31.91781 -30.88442 -30.68961 -28.44277 -26.41208 -24.98249 -23.42994 -22.98895 -20.80776 -20.32885 -19.38346 -17.54284 -16.82687 -16.73630 -16.49674 -16.01783 -15.76299 -15.28908 -14.55770 -14.48594 -14.05486 -13.99038 -13.54480 -13.31318 -12.97804 -12.69673 -12.33076 -12.21248 -12.06427 -11.90165 -11.68566 -11.27405 -10.92125 -10.80548 -10.76876 -10.68915 -10.42723 -10.09692 -9.99316 -9.79330 -9.64075 -9.41292 -8.92912 -8.48570 -7.94492 -6.02944 -4.00955 2.28758 2.60859 3.36404 3.43424 3.48160 4.03867 4.18096 4.48830 4.81874 4.93316 4.96465 5.01815 5.04344 5.17419 5.24872 5.29435 5.32088 5.37147 5.38684 5.44434 5.56715 5.70448 5.76912 5.85690 6.00907 6.12338 6.23427 6.27138 6.34920 6.50860 6.57118 6.77621 7.10527 7.28100 7.40135 7.46590 7.56832 7.83693 7.87054 8.52757 9.00460 9.59894 11.10263 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.006268 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.716957 B = 4466.253226 C = 5253.213886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.456 3.544 4 O -0.484 6.484 5 C 0.062 3.938 6 N -0.522 5.522 7 C 0.063 3.937 8 C -0.013 4.013 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.070 3.930 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.098 3.902 18 C -0.164 4.164 19 C 0.064 3.936 20 O -0.382 6.382 21 C 0.069 3.931 22 C -0.198 4.198 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.104 0.896 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 -10.718 -8.397 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.297 3.703 4 O -0.368 6.368 5 C -0.067 4.067 6 N -0.246 5.246 7 C -0.063 4.063 8 C -0.050 4.050 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.131 4.131 12 N -0.542 5.542 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.186 1.186 17 C -0.011 4.011 18 C -0.202 4.202 19 C -0.013 4.013 20 O -0.300 6.300 21 C -0.008 4.008 22 C -0.237 4.237 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.548 -9.862 -8.085 19.346 hybrid contribution -0.421 0.091 -0.366 0.565 sum -14.969 -9.772 -8.451 19.773 Atomic orbital electron populations 1.23187 0.76744 1.03292 1.02434 1.86499 1.23141 1.34113 1.84749 1.23938 0.92287 0.81202 0.72901 1.90665 1.66651 1.36125 1.43396 1.21602 0.87507 0.92957 1.04622 1.61951 1.23912 1.15306 1.23462 1.22414 0.83363 1.01137 0.99377 1.19832 0.97047 0.90826 0.97280 1.21057 0.98172 0.94154 1.42601 0.91148 1.24955 0.94803 0.98947 0.94412 1.69907 1.16475 1.23171 1.44686 0.86822 0.80742 0.82604 0.79404 1.20335 1.21509 1.18594 1.21575 0.95716 0.96712 0.87090 1.22659 1.05142 0.95493 0.96900 1.22592 0.86702 1.00775 0.91262 1.87932 1.44689 1.23666 1.73744 1.22454 1.00230 0.82208 0.95924 1.23045 1.01944 1.01355 0.97330 0.91973 0.92178 0.88389 0.91060 0.86525 0.91287 0.93683 0.95081 0.95962 0.92743 0.91860 0.90352 0.87789 0.89030 0.94009 0.89064 0.94058 0.87820 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.37 -4.41 10.56 -39.26 -0.41 -4.82 16 3 C 0.46 6.43 7.30 36.00 0.26 6.69 16 4 O -0.48 -8.24 15.40 -18.75 -0.29 -8.53 16 5 C 0.06 0.84 5.50 -4.98 -0.03 0.81 16 6 N -0.52 -8.76 3.95 -227.87 -0.90 -9.66 16 7 C 0.06 1.19 4.40 -3.83 -0.02 1.17 16 8 C -0.01 -0.29 2.79 -27.88 -0.08 -0.37 16 9 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 10 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 13 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 16 H -0.26 -6.30 6.48 56.52 0.37 -5.94 16 17 C 0.10 1.55 1.63 -67.53 -0.11 1.44 16 18 C -0.16 -2.82 5.39 -26.59 -0.14 -2.96 16 19 C 0.06 0.96 6.84 37.21 0.25 1.21 16 20 O -0.38 -6.29 10.77 -35.23 -0.38 -6.67 16 21 C 0.07 0.96 6.84 37.20 0.25 1.21 16 22 C -0.20 -2.95 4.15 -26.59 -0.11 -3.06 16 23 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 24 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 27 H 0.12 1.40 7.71 -51.93 -0.40 1.00 16 28 H 0.07 1.30 7.71 -51.93 -0.40 0.90 16 29 H 0.05 0.82 5.46 -51.93 -0.28 0.54 16 30 H 0.03 0.74 3.56 -51.93 -0.18 0.56 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.06 0.96 6.84 -51.93 -0.36 0.61 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.10 2.10 4.24 -51.93 -0.22 1.88 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.85 5.10 -51.93 -0.27 1.59 16 41 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -32.67 318.40 -6.43 -39.10 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.28 Total: 0.85 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.92 Total: -5.39 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.13 Total: -36.68 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.08 Total: -20.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.67 -6.43 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076117977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.504 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds