Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48504 * 109.47201 * 270.00446 * 3 2 1 5 5 H 1.48506 * 109.47021 * 30.00372 * 3 2 1 6 6 H 1.48493 * 109.47117 * 150.00351 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99915 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99999 * 190.00029 * 10 9 7 12 12 C 1.52997 * 109.47230 * 75.71412 * 11 10 9 13 13 N 1.46903 * 109.47258 * 174.59823 * 12 11 10 14 14 C 1.47013 * 110.99581 * 46.31638 * 13 12 11 15 15 C 1.53101 * 109.25195 * 182.35591 * 14 13 12 16 16 O 1.43016 * 109.29131 * 303.21484 * 15 14 13 17 17 C 1.43012 * 113.73926 * 58.65381 * 16 15 14 18 18 C 1.47015 * 111.00166 * 169.99825 * 13 12 11 19 19 C 1.46890 * 111.00263 * 66.04161 * 10 9 7 20 20 C 1.50695 * 109.47352 * 200.24464 * 19 10 9 21 21 N 1.34778 * 120.00400 * 175.52472 * 20 19 10 22 22 O 1.21282 * 120.00264 * 355.51954 * 20 19 10 23 23 H 0.97006 * 119.99957 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47613 * 59.99669 * 9 7 2 25 25 H 1.09002 * 109.47082 * 299.99858 * 9 7 2 26 26 H 1.08996 * 109.46569 * 315.71101 * 11 10 9 27 27 H 1.08996 * 109.46820 * 195.71375 * 11 10 9 28 28 H 1.08995 * 109.47550 * 54.59259 * 12 11 10 29 29 H 1.09007 * 109.46653 * 294.59414 * 12 11 10 30 30 H 1.08995 * 109.47866 * 62.44159 * 14 13 12 31 31 H 1.09003 * 109.54598 * 302.30643 * 14 13 12 32 32 H 1.09004 * 109.50359 * 183.25963 * 15 14 13 33 33 H 1.08998 * 109.50838 * 63.17470 * 15 14 13 34 34 H 1.08998 * 109.50811 * 61.26104 * 17 16 15 35 35 H 1.08996 * 109.50809 * 181.34883 * 17 16 15 36 36 H 1.09004 * 109.50588 * 57.66833 * 18 13 12 37 37 H 1.09002 * 109.50467 * 297.54279 * 18 13 12 38 38 H 1.08998 * 109.47149 * 320.24583 * 19 10 9 39 39 H 1.09001 * 109.47435 * 80.24202 * 19 10 9 40 40 H 0.97009 * 119.99507 * 359.97438 * 21 20 19 41 41 H 0.96995 * 120.00415 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4501 -2.6251 0.2366 12 6 5.7325 -2.3665 1.7179 13 7 7.1675 -2.5399 1.9804 14 6 7.9759 -1.8507 0.9642 15 6 9.4599 -2.1057 1.2415 16 8 9.7736 -1.6740 2.5684 17 6 9.0050 -2.3262 3.5829 18 6 7.5165 -2.0726 3.3299 19 6 3.6512 -3.2613 -1.2539 20 6 3.7059 -4.7528 -1.0459 21 7 3.3336 -5.5857 -2.0380 22 8 4.0850 -5.2038 0.0141 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6800 -0.8912 26 1 5.9415 -1.8610 -0.3658 27 1 5.8326 -3.6075 -0.0401 28 1 5.1644 -3.0715 2.3246 29 1 5.4372 -1.3484 1.9717 30 1 7.7766 -0.7799 1.0061 31 1 7.7200 -2.2308 -0.0248 32 1 10.0648 -1.5496 0.5253 33 1 9.6702 -3.1709 1.1460 34 1 9.2014 -3.3980 3.5557 35 1 9.2814 -1.9302 4.5600 36 1 6.9244 -2.6148 4.0673 37 1 7.3102 -1.0053 3.4102 38 1 2.6441 -2.9732 -1.5554 39 1 4.3589 -2.9768 -2.0325 40 1 3.0301 -5.2250 -2.8858 41 1 3.3692 -6.5458 -1.9043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078681292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = -62.904175 kcal Electronic energy + Delta-G solvation = -21764.564668 eV Core-core repulsion = 18486.969958 eV Total energy + Delta-G solvation = -3277.594710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63744 -39.04095 -36.84796 -35.25292 -33.24444 -32.53433 -31.27199 -29.77213 -28.40434 -26.78697 -24.53177 -23.98495 -21.98933 -20.91345 -20.14344 -19.48832 -17.23019 -16.84633 -16.46690 -16.34181 -16.12256 -15.19808 -15.07606 -14.99825 -14.56000 -14.48668 -14.29523 -13.65184 -13.38819 -12.96781 -12.82928 -12.49614 -12.27934 -11.99052 -11.84183 -11.42204 -11.35620 -10.92846 -10.81668 -10.69654 -10.59326 -10.28495 -9.90184 -9.69622 -9.40846 -9.32752 -9.28160 -8.65657 -8.22626 -7.46327 -6.12821 -4.10937 3.14111 3.21433 3.30465 3.31919 3.70250 3.82057 3.95324 4.34676 4.77560 4.90833 5.02697 5.06426 5.13903 5.19440 5.25799 5.39879 5.47180 5.51694 5.54291 5.61180 5.78925 5.81148 5.83866 5.93226 5.97127 6.11802 6.28500 6.47015 6.73303 6.79183 7.01915 7.08465 7.12758 7.13972 7.49233 7.61060 7.83288 7.94047 8.56663 8.72752 8.95403 9.48532 11.00006 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.006064 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.559633 B = 4616.396620 C = 6172.685866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.509 5.509 11 C 0.060 3.940 12 C 0.066 3.934 13 N -0.535 5.535 14 C 0.011 3.989 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.042 3.958 20 C 0.516 3.484 21 N -0.866 5.866 22 O -0.527 6.527 23 H 0.264 0.736 24 H 0.033 0.967 25 H -0.015 1.015 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.121 0.879 39 H 0.051 0.949 40 H 0.398 0.602 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.911 -5.817 -1.830 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.233 5.233 11 C -0.068 4.068 12 C -0.062 4.062 13 N -0.261 5.261 14 C -0.117 4.117 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.111 4.111 19 C -0.090 4.090 20 C 0.301 3.699 21 N -0.431 5.431 22 O -0.401 6.401 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.002 0.998 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.069 0.931 40 H 0.226 0.774 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 15.035 -6.381 -0.643 16.345 hybrid contribution 0.015 1.856 -1.109 2.162 sum 15.050 -4.525 -1.752 15.813 Atomic orbital electron populations 1.69889 1.06101 1.26928 1.50624 1.24883 0.94708 0.98775 0.94719 0.86892 0.80367 0.84155 0.78485 1.20284 1.21049 1.19318 1.21023 0.88611 0.94761 1.50783 0.90036 1.20274 0.97205 0.83600 0.95301 1.61379 1.11206 1.18493 1.32254 1.22122 0.89245 1.00392 0.95076 1.22080 0.85869 1.00535 0.97691 1.62284 1.05754 1.56395 1.01619 1.22867 0.94110 0.97415 0.97353 1.22672 0.94465 0.99989 0.84103 1.87949 1.62048 1.65484 1.15329 1.22655 0.89585 0.97594 0.91344 1.22766 0.97206 0.99245 0.91868 1.21889 1.04458 0.90101 0.92508 1.20984 0.75745 0.89827 0.83347 1.43919 1.71539 1.09955 1.17662 1.90699 1.45473 1.78307 1.25629 0.92566 0.94923 0.99783 0.96043 0.90517 0.89109 0.94622 0.94109 0.89275 0.88770 0.92355 0.92314 0.88670 0.89450 0.94025 0.86144 0.93088 0.77428 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.51 -14.08 8.78 -34.44 -0.30 -14.38 16 8 H 0.08 2.44 7.56 -52.49 -0.40 2.05 16 9 C 0.16 3.80 3.62 -4.98 -0.02 3.79 16 10 N -0.51 -10.59 4.01 -237.53 -0.95 -11.55 16 11 C 0.06 1.08 3.54 -3.82 -0.01 1.07 16 12 C 0.07 1.15 5.31 -3.82 -0.02 1.13 16 13 N -0.53 -8.02 4.87 -234.30 -1.14 -9.17 16 14 C 0.01 0.15 4.95 -3.71 -0.02 0.13 16 15 C 0.06 0.75 7.01 37.21 0.26 1.01 16 16 O -0.39 -5.11 10.83 -35.23 -0.38 -5.50 16 17 C 0.07 0.75 7.01 37.21 0.26 1.01 16 18 C 0.02 0.23 5.63 -3.71 -0.02 0.21 16 19 C 0.04 0.75 5.28 -4.98 -0.03 0.73 16 20 C 0.52 8.78 7.76 -10.99 -0.09 8.69 16 21 N -0.87 -10.19 8.87 31.22 0.28 -9.92 16 22 O -0.53 -11.01 16.05 5.56 0.09 -10.92 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.79 5.78 -51.93 -0.30 0.49 16 25 H -0.02 -0.35 7.55 -51.93 -0.39 -0.75 16 26 H 0.02 0.37 6.50 -51.93 -0.34 0.03 16 27 H 0.08 1.39 6.68 -51.93 -0.35 1.04 16 28 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.15 6.17 -51.93 -0.32 0.83 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.12 2.31 6.58 -51.93 -0.34 1.97 16 39 H 0.05 0.78 7.99 -51.93 -0.41 0.37 16 40 H 0.40 3.51 8.83 -40.82 -0.36 3.15 16 41 H 0.39 4.06 8.93 -40.82 -0.36 3.70 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -33.34 324.07 -7.68 -41.03 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.48 Total: 5.49 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.08 Total: 5.29 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -1.04 Total: -56.60 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.29 Total: -16.42 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.34 -7.68 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078681292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.876 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds