Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48504 * 109.47201 * 270.00446 * 3 2 1 5 5 H 1.48506 * 109.47021 * 30.00372 * 3 2 1 6 6 H 1.48493 * 109.47117 * 150.00351 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99915 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99999 * 190.00029 * 10 9 7 12 12 C 1.52997 * 109.47230 * 75.71412 * 11 10 9 13 13 N 1.46903 * 109.47258 * 174.59823 * 12 11 10 14 14 C 1.47013 * 110.99581 * 46.31638 * 13 12 11 15 15 C 1.53101 * 109.25195 * 182.35591 * 14 13 12 16 16 O 1.43016 * 109.29131 * 303.21484 * 15 14 13 17 17 C 1.43012 * 113.73926 * 58.65381 * 16 15 14 18 18 C 1.47015 * 111.00166 * 169.99825 * 13 12 11 19 19 C 1.46890 * 111.00263 * 66.04161 * 10 9 7 20 20 C 1.50695 * 109.47352 * 200.24464 * 19 10 9 21 21 N 1.34778 * 120.00400 * 175.52472 * 20 19 10 22 22 O 1.21282 * 120.00264 * 355.51954 * 20 19 10 23 23 H 0.97006 * 119.99957 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47613 * 59.99669 * 9 7 2 25 25 H 1.09002 * 109.47082 * 299.99858 * 9 7 2 26 26 H 1.08996 * 109.46569 * 315.71101 * 11 10 9 27 27 H 1.08996 * 109.46820 * 195.71375 * 11 10 9 28 28 H 1.08995 * 109.47550 * 54.59259 * 12 11 10 29 29 H 1.09007 * 109.46653 * 294.59414 * 12 11 10 30 30 H 1.08995 * 109.47866 * 62.44159 * 14 13 12 31 31 H 1.09003 * 109.54598 * 302.30643 * 14 13 12 32 32 H 1.09004 * 109.50359 * 183.25963 * 15 14 13 33 33 H 1.08998 * 109.50838 * 63.17470 * 15 14 13 34 34 H 1.08998 * 109.50811 * 61.26104 * 17 16 15 35 35 H 1.08996 * 109.50809 * 181.34883 * 17 16 15 36 36 H 1.09004 * 109.50588 * 57.66833 * 18 13 12 37 37 H 1.09002 * 109.50467 * 297.54279 * 18 13 12 38 38 H 1.08998 * 109.47149 * 320.24583 * 19 10 9 39 39 H 1.09001 * 109.47435 * 80.24202 * 19 10 9 40 40 H 0.97009 * 119.99507 * 359.97438 * 21 20 19 41 41 H 0.96995 * 120.00415 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4501 -2.6251 0.2366 12 6 5.7325 -2.3665 1.7179 13 7 7.1675 -2.5399 1.9804 14 6 7.9759 -1.8507 0.9642 15 6 9.4599 -2.1057 1.2415 16 8 9.7736 -1.6740 2.5684 17 6 9.0050 -2.3262 3.5829 18 6 7.5165 -2.0726 3.3299 19 6 3.6512 -3.2613 -1.2539 20 6 3.7059 -4.7528 -1.0459 21 7 3.3336 -5.5857 -2.0380 22 8 4.0850 -5.2038 0.0141 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8744 -0.6800 -0.8912 26 1 5.9415 -1.8610 -0.3658 27 1 5.8326 -3.6075 -0.0401 28 1 5.1644 -3.0715 2.3246 29 1 5.4372 -1.3484 1.9717 30 1 7.7766 -0.7799 1.0061 31 1 7.7200 -2.2308 -0.0248 32 1 10.0648 -1.5496 0.5253 33 1 9.6702 -3.1709 1.1460 34 1 9.2014 -3.3980 3.5557 35 1 9.2814 -1.9302 4.5600 36 1 6.9244 -2.6148 4.0673 37 1 7.3102 -1.0053 3.4102 38 1 2.6441 -2.9732 -1.5554 39 1 4.3589 -2.9768 -2.0325 40 1 3.0301 -5.2250 -2.8858 41 1 3.3692 -6.5458 -1.9043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078681292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = -92.674256 kcal Electronic energy + Delta-G solvation = -21765.855595 eV Core-core repulsion = 18486.969958 eV Total energy + Delta-G solvation = -3278.885637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80852 -40.32635 -38.26224 -36.55178 -34.61147 -34.49185 -32.26741 -31.12260 -30.21080 -28.05921 -26.03691 -25.03314 -23.62883 -22.26369 -21.32186 -20.92709 -19.06004 -18.28525 -17.74804 -17.52883 -17.11829 -16.55457 -16.45454 -16.09918 -16.00946 -15.76134 -15.69247 -15.24679 -14.82693 -14.42717 -14.30914 -14.15070 -13.75690 -13.36269 -13.13878 -12.82256 -12.67713 -12.46764 -12.37875 -12.03987 -11.90934 -11.84653 -11.52453 -11.41366 -10.83422 -10.77545 -10.67594 -10.51401 -9.43249 -9.04170 -8.29130 -6.32389 1.32311 1.35770 1.44925 1.78323 2.32470 2.47820 2.73223 2.94833 3.04574 3.41260 3.86683 3.96209 3.97787 4.06775 4.17877 4.20391 4.29449 4.31584 4.45978 4.47174 4.58159 4.59175 4.70029 4.77906 4.79651 4.85093 4.89409 4.98006 5.02032 5.08528 5.52237 5.86657 5.94191 5.95993 6.03925 6.15337 6.22304 6.59446 6.62866 6.73995 7.31208 7.50864 8.87111 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.006064 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.559633 B = 4616.396620 C = 6172.685866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.515 4.515 8 H 0.040 0.960 9 C 0.175 3.825 10 N -0.533 5.533 11 C 0.070 3.930 12 C 0.075 3.925 13 N -0.539 5.539 14 C 0.009 3.991 15 C 0.067 3.933 16 O -0.404 6.404 17 C 0.068 3.932 18 C 0.014 3.986 19 C 0.041 3.959 20 C 0.517 3.483 21 N -0.838 5.838 22 O -0.571 6.571 23 H 0.267 0.733 24 H 0.025 0.975 25 H -0.004 1.004 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.416 0.584 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.260 -5.465 -2.764 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.049 3.951 10 N -0.258 5.258 11 C -0.058 4.058 12 C -0.053 4.053 13 N -0.264 5.264 14 C -0.119 4.119 15 C -0.010 4.010 16 O -0.322 6.322 17 C -0.008 4.008 18 C -0.114 4.114 19 C -0.090 4.090 20 C 0.302 3.698 21 N -0.404 5.404 22 O -0.450 6.450 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.014 0.986 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.246 0.754 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 17.390 -6.064 -1.634 18.490 hybrid contribution -0.769 1.623 -0.849 1.986 sum 16.622 -4.441 -2.484 17.383 Atomic orbital electron populations 1.70036 1.08002 1.28081 1.52285 1.25739 0.95473 1.02738 0.94344 0.85807 0.79206 0.79123 0.79337 1.18600 1.20974 1.18104 1.21198 0.90777 0.93267 1.50104 0.94125 1.19982 0.94421 0.85480 0.95243 1.61241 1.13202 1.17022 1.34343 1.22056 0.87489 1.00817 0.95402 1.21868 0.87565 0.98730 0.97173 1.62291 1.04228 1.56932 1.02980 1.22959 0.95205 0.96585 0.97145 1.22779 0.93241 1.00862 0.84100 1.87936 1.62271 1.65992 1.16040 1.22754 0.87883 0.98116 0.92074 1.22877 0.98827 0.98654 0.91043 1.21897 1.04205 0.90709 0.92201 1.20829 0.75645 0.89817 0.83517 1.43610 1.69384 1.10172 1.17210 1.90686 1.47963 1.78807 1.27524 0.92393 0.95665 0.98610 0.94521 0.90397 0.91422 0.96262 0.95135 0.88734 0.86474 0.91672 0.91670 0.86395 0.89061 0.94956 0.87940 0.89896 0.75354 0.76142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 2 C 0.02 0.85 5.47 84.66 0.46 1.31 16 3 Si 0.94 42.99 27.47 68.60 1.88 44.87 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.18 6.54 99.48 0.65 -10.53 16 7 C -0.52 -28.84 8.78 25.60 0.22 -28.61 16 8 H 0.04 2.55 7.56 -2.91 -0.02 2.53 16 9 C 0.18 8.17 3.62 85.55 0.31 8.48 16 10 N -0.53 -22.15 4.01 -905.41 -3.63 -25.78 16 11 C 0.07 2.47 3.54 86.30 0.31 2.77 16 12 C 0.07 2.63 5.31 86.30 0.46 3.09 16 13 N -0.54 -15.68 4.87 -895.20 -4.36 -20.04 16 14 C 0.01 0.23 4.95 86.32 0.43 0.66 16 15 C 0.07 1.39 7.01 72.02 0.50 1.89 16 16 O -0.40 -9.64 10.83 -148.98 -1.61 -11.25 16 17 C 0.07 1.42 7.01 72.02 0.50 1.93 16 18 C 0.01 0.36 5.63 86.31 0.49 0.85 16 19 C 0.04 1.44 5.28 85.56 0.45 1.89 16 20 C 0.52 17.17 7.76 87.66 0.68 17.85 16 21 N -0.84 -18.20 8.87 -173.53 -1.54 -19.74 16 22 O -0.57 -23.88 16.05 -3.03 -0.05 -23.93 16 23 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 24 H 0.03 1.22 5.78 -2.39 -0.01 1.20 16 25 H 0.00 -0.16 7.55 -2.39 -0.02 -0.18 16 26 H 0.04 1.18 6.50 -2.39 -0.02 1.16 16 27 H 0.08 2.74 6.68 -2.39 -0.02 2.72 16 28 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.02 0.73 6.90 -2.38 -0.02 0.71 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 2.24 6.17 -2.39 -0.01 2.22 16 32 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 3.97 6.58 -2.39 -0.02 3.95 16 39 H 0.08 2.35 7.99 -2.39 -0.02 2.33 16 40 H 0.42 6.35 8.83 -92.70 -0.82 5.53 16 41 H 0.41 7.54 8.93 -92.71 -0.83 6.71 16 Total: -1.00 -73.26 324.07 -4.86 -78.12 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.66 Total: 22.86 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 4.81 Total: 12.11 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -9.24 Total: -122.79 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.66 Total: -35.18 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Total: -73.26 -4.86 -78.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078681292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.552 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds