Wall clock time and date at job start Mon Mar 30 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99511 * 2 1 4 4 H 1.48503 * 109.46852 * 275.26823 * 3 2 1 5 5 H 1.48503 * 109.47167 * 35.26649 * 3 2 1 6 6 H 1.48503 * 109.47205 * 155.26847 * 3 2 1 7 7 C 1.38809 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99918 * 31.07301 * 7 2 1 9 9 N 1.36941 * 120.00079 * 211.07605 * 7 2 1 10 10 C 1.50168 * 120.53210 * 41.02912 * 9 7 2 11 11 C 1.46241 * 107.52867 * 109.60973 * 10 9 7 12 12 C 1.52525 * 114.27576 * 58.40621 * 11 10 9 13 13 C 1.50014 * 105.29625 * 270.62424 * 12 11 10 14 14 C 1.54847 * 110.87992 * 97.84862 * 13 12 11 15 15 C 1.43432 * 120.53407 * 221.04983 * 9 7 2 16 16 H 1.08994 * 108.16151 * 149.82693 * 15 9 7 17 17 C 1.50702 * 107.99704 * 33.14017 * 15 9 7 18 18 C 1.32570 * 119.99949 * 109.96493 * 17 15 9 19 19 C 1.47814 * 119.99847 * 174.21402 * 18 17 15 20 20 C 1.39533 * 120.14326 * 359.71721 * 19 18 17 21 21 C 1.37969 * 119.85794 * 179.77011 * 20 19 18 22 22 C 1.38356 * 120.13913 * 0.48612 * 21 20 19 23 23 C 1.38346 * 120.28393 * 359.76679 * 22 21 20 24 24 C 1.37972 * 120.14117 * 0.02562 * 23 22 21 25 25 H 0.97000 * 120.00717 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.84521 * 229.11104 * 10 9 7 27 27 H 1.08997 * 109.85005 * 350.10371 * 10 9 7 28 28 H 1.08998 * 108.52078 * 179.64717 * 11 10 9 29 29 H 1.08997 * 108.52447 * 297.32047 * 11 10 9 30 30 H 1.09000 * 110.25299 * 29.56396 * 12 11 10 31 31 H 1.09003 * 110.24913 * 151.47675 * 12 11 10 32 32 H 1.09009 * 109.27773 * 337.42216 * 13 12 11 33 33 H 1.08992 * 109.07340 * 218.14608 * 13 12 11 34 34 H 1.09002 * 109.35886 * 200.80122 * 14 13 12 35 35 H 1.08999 * 109.35294 * 81.07326 * 14 13 12 36 36 H 1.07996 * 120.00154 * 289.95599 * 17 15 9 37 37 H 1.07997 * 119.99731 * 354.20471 * 18 17 15 38 38 H 1.08003 * 120.06788 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.93348 * 180.22902 * 21 20 19 40 40 H 1.07992 * 119.85592 * 179.74366 * 22 21 20 41 41 H 1.07999 * 119.92220 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.06531 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3861 2.1108 -1.3942 5 1 1.5075 2.6181 0.8084 6 1 3.5989 1.4108 0.5858 7 6 2.0103 -1.2021 0.0005 8 1 1.5866 -2.0705 -0.4818 9 7 3.2323 -1.2868 0.6127 10 6 3.4729 -0.6120 1.9325 11 6 3.5948 -1.6586 2.9466 12 6 4.7121 -2.6623 2.6807 13 6 4.0834 -3.7443 1.8534 14 6 4.3773 -3.5294 0.3483 15 6 4.3032 -2.0211 0.0035 16 1 5.2444 -1.5582 0.3000 17 6 4.1682 -1.8872 -1.4915 18 6 5.0470 -1.1671 -2.1746 19 6 4.9911 -1.1393 -3.6514 20 6 4.0183 -1.8745 -4.3298 21 6 3.9686 -1.8405 -5.7082 22 6 4.8869 -1.0875 -6.4181 23 6 5.8571 -0.3605 -5.7517 24 6 5.9148 -0.3827 -4.3733 25 1 -0.4851 0.8400 -0.0004 26 1 4.3937 -0.0305 1.8884 27 1 2.6334 0.0403 2.1731 28 1 3.7763 -1.1860 3.9119 29 1 2.6507 -2.2008 2.9999 30 1 5.5226 -2.1870 2.1282 31 1 5.0850 -3.0694 3.6206 32 1 3.0051 -3.7386 2.0127 33 1 4.4858 -4.7087 2.1632 34 1 3.6411 -4.0722 -0.2446 35 1 5.3745 -3.9043 0.1179 36 1 3.3555 -2.3780 -2.0064 37 1 5.8036 -0.6007 -1.6520 38 1 3.3038 -2.4663 -3.7769 39 1 3.2139 -2.4062 -6.2343 40 1 4.8463 -1.0675 -7.4971 41 1 6.5712 0.2249 -6.3117 42 1 6.6730 0.1850 -3.8544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084868318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:56 Heat of formation + Delta-G solvation = 59.679072 kcal Electronic energy + Delta-G solvation = -20996.625413 eV Core-core repulsion = 18135.195575 eV Total energy + Delta-G solvation = -2861.429838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.97023 -38.33010 -34.53113 -33.39026 -31.73518 -31.26478 -30.69022 -28.60515 -26.21152 -24.51333 -23.32240 -22.47335 -21.74612 -20.34043 -19.25645 -18.61750 -16.74996 -16.27812 -15.45236 -15.05480 -14.76663 -14.59177 -14.13611 -13.80000 -13.51229 -13.21636 -12.99790 -12.66354 -12.65639 -12.35371 -12.04469 -11.80497 -11.61257 -11.49715 -10.94228 -10.81299 -10.67135 -10.52563 -10.14211 -10.10576 -9.91107 -9.79864 -9.74558 -9.57916 -9.35792 -8.70226 -8.43707 -7.61229 -6.72880 -6.05504 -3.39440 1.33764 1.66268 3.04880 3.40216 3.52493 3.58459 4.24991 4.58378 4.86922 5.08327 5.13116 5.18091 5.32538 5.35015 5.42059 5.48349 5.58733 5.70738 5.73122 5.77768 5.95887 5.97186 6.02828 6.22570 6.24542 6.26395 6.33571 6.36108 6.41999 6.57209 6.65369 6.67725 6.72037 6.76325 6.81933 6.84173 6.93042 6.97461 7.09831 7.21824 7.34964 7.43704 8.03266 8.44078 8.98775 9.72521 10.21073 11.10024 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.006547 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.505442 B = 4276.032172 C = 5196.086784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.050 3.950 3 Si 0.849 3.151 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.260 1.260 7 C -0.270 4.270 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.141 3.859 11 C -0.135 4.135 12 C -0.112 4.112 13 C -0.107 4.107 14 C -0.133 4.133 15 C 0.206 3.794 16 H 0.040 0.960 17 C -0.068 4.068 18 C -0.171 4.171 19 C -0.026 4.026 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 -4.037 -3.998 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.152 4.152 3 Si 0.676 3.324 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.184 1.184 7 C -0.398 4.398 8 H 0.090 0.910 9 N -0.310 5.310 10 C 0.017 3.983 11 C -0.174 4.174 12 C -0.150 4.150 13 C -0.144 4.144 14 C -0.174 4.174 15 C 0.098 3.902 16 H 0.058 0.942 17 C -0.087 4.087 18 C -0.190 4.190 19 C -0.026 4.026 20 C -0.138 4.138 21 C -0.134 4.134 22 C -0.157 4.157 23 C -0.139 4.139 24 C -0.142 4.142 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.020 -3.926 -3.982 12.358 hybrid contribution 0.225 1.144 -0.123 1.172 sum 11.245 -2.782 -4.105 12.290 Atomic orbital electron populations 1.70025 1.06375 1.26870 1.49215 1.25482 0.94697 0.97640 0.97364 0.87219 0.81862 0.85458 0.77860 1.21717 1.22446 1.18405 1.18487 0.92579 0.94882 1.33823 0.91038 1.44242 1.09822 1.58850 1.18049 1.20619 0.98827 0.93542 0.85289 1.21008 0.99014 0.98835 0.98497 1.20953 0.98114 0.97219 0.98713 1.21389 1.01290 0.96763 0.94992 1.22785 0.99785 0.98869 0.95936 1.19232 0.91556 0.91321 0.88119 0.94244 1.23840 0.94253 0.93932 0.96669 1.21426 1.03028 1.03627 0.90956 1.19186 0.94353 0.95320 0.93708 1.21401 0.98336 0.99791 0.94225 1.21052 0.98794 0.99359 0.94230 1.21069 0.96444 0.98811 0.99391 1.20991 0.98829 0.99678 0.94394 1.21214 0.99335 0.99752 0.93940 0.92808 0.95104 0.91674 0.94254 0.91538 0.91960 0.93048 0.91401 0.94207 0.92517 0.93048 0.86946 0.87255 0.85540 0.86362 0.86715 0.86602 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.97 55.49 0.78 -25.61 16 2 C 0.05 1.41 4.95 -17.43 -0.09 1.32 16 3 Si 0.85 21.59 26.65 -169.99 -4.53 17.06 16 4 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.26 -6.28 5.63 56.52 0.32 -5.96 16 7 C -0.27 -7.13 8.36 -15.06 -0.13 -7.26 16 8 H 0.07 2.06 7.98 -52.49 -0.42 1.64 16 9 N -0.59 -13.16 1.97 -168.73 -0.33 -13.49 16 10 C 0.14 2.94 4.06 -5.20 -0.02 2.91 16 11 C -0.13 -2.40 5.20 -30.19 -0.16 -2.55 16 12 C -0.11 -1.75 5.76 -28.46 -0.16 -1.92 16 13 C -0.11 -1.72 5.63 -27.24 -0.15 -1.88 16 14 C -0.13 -2.23 5.72 -24.76 -0.14 -2.37 16 15 C 0.21 3.95 2.06 -69.70 -0.14 3.80 16 16 H 0.04 0.74 6.50 -51.93 -0.34 0.40 16 17 C -0.07 -1.30 6.87 -36.21 -0.25 -1.55 16 18 C -0.17 -3.06 9.49 -37.57 -0.36 -3.42 16 19 C -0.03 -0.44 5.87 -105.02 -0.62 -1.05 16 20 C -0.12 -1.96 9.39 -39.20 -0.37 -2.32 16 21 C -0.12 -1.66 10.03 -39.64 -0.40 -2.05 16 22 C -0.14 -1.83 10.04 -39.50 -0.40 -2.23 16 23 C -0.12 -1.61 10.03 -39.64 -0.40 -2.01 16 24 C -0.12 -1.87 9.79 -39.20 -0.38 -2.25 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.62 7.60 -51.93 -0.39 0.22 16 27 H 0.06 1.49 5.92 -51.93 -0.31 1.18 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.29 6.91 -51.93 -0.36 0.93 16 30 H 0.06 0.97 6.29 -51.93 -0.33 0.65 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.24 6.81 -51.92 -0.35 0.89 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.98 7.99 -51.93 -0.42 0.57 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 2.21 5.88 -52.49 -0.31 1.91 16 37 H 0.11 1.86 7.86 -52.49 -0.41 1.44 16 38 H 0.13 2.05 6.19 -52.48 -0.32 1.73 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -29.18 324.72 -9.91 -39.09 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.56 Total: 2.87 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -4.16 Total: -24.82 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.44 Total: -39.10 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.53 Total: 17.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.18 -9.91 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084868318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.773 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds