Wall clock time and date at job start Mon Mar 30 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99511 * 2 1 4 4 H 1.48503 * 109.46852 * 275.26823 * 3 2 1 5 5 H 1.48503 * 109.47167 * 35.26649 * 3 2 1 6 6 H 1.48503 * 109.47205 * 155.26847 * 3 2 1 7 7 C 1.38809 * 120.00541 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99918 * 31.07301 * 7 2 1 9 9 N 1.36941 * 120.00079 * 211.07605 * 7 2 1 10 10 C 1.50168 * 120.53210 * 41.02912 * 9 7 2 11 11 C 1.46241 * 107.52867 * 109.60973 * 10 9 7 12 12 C 1.52525 * 114.27576 * 58.40621 * 11 10 9 13 13 C 1.50014 * 105.29625 * 270.62424 * 12 11 10 14 14 C 1.54847 * 110.87992 * 97.84862 * 13 12 11 15 15 C 1.43432 * 120.53407 * 221.04983 * 9 7 2 16 16 H 1.08994 * 108.16151 * 149.82693 * 15 9 7 17 17 C 1.50702 * 107.99704 * 33.14017 * 15 9 7 18 18 C 1.32570 * 119.99949 * 109.96493 * 17 15 9 19 19 C 1.47814 * 119.99847 * 174.21402 * 18 17 15 20 20 C 1.39533 * 120.14326 * 359.71721 * 19 18 17 21 21 C 1.37969 * 119.85794 * 179.77011 * 20 19 18 22 22 C 1.38356 * 120.13913 * 0.48612 * 21 20 19 23 23 C 1.38346 * 120.28393 * 359.76679 * 22 21 20 24 24 C 1.37972 * 120.14117 * 0.02562 * 23 22 21 25 25 H 0.97000 * 120.00717 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.84521 * 229.11104 * 10 9 7 27 27 H 1.08997 * 109.85005 * 350.10371 * 10 9 7 28 28 H 1.08998 * 108.52078 * 179.64717 * 11 10 9 29 29 H 1.08997 * 108.52447 * 297.32047 * 11 10 9 30 30 H 1.09000 * 110.25299 * 29.56396 * 12 11 10 31 31 H 1.09003 * 110.24913 * 151.47675 * 12 11 10 32 32 H 1.09009 * 109.27773 * 337.42216 * 13 12 11 33 33 H 1.08992 * 109.07340 * 218.14608 * 13 12 11 34 34 H 1.09002 * 109.35886 * 200.80122 * 14 13 12 35 35 H 1.08999 * 109.35294 * 81.07326 * 14 13 12 36 36 H 1.07996 * 120.00154 * 289.95599 * 17 15 9 37 37 H 1.07997 * 119.99731 * 354.20471 * 18 17 15 38 38 H 1.08003 * 120.06788 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.93348 * 180.22902 * 21 20 19 40 40 H 1.07992 * 119.85592 * 179.74366 * 22 21 20 41 41 H 1.07999 * 119.92220 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.06531 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3861 2.1108 -1.3942 5 1 1.5075 2.6181 0.8084 6 1 3.5989 1.4108 0.5858 7 6 2.0103 -1.2021 0.0005 8 1 1.5866 -2.0705 -0.4818 9 7 3.2323 -1.2868 0.6127 10 6 3.4729 -0.6120 1.9325 11 6 3.5948 -1.6586 2.9466 12 6 4.7121 -2.6623 2.6807 13 6 4.0834 -3.7443 1.8534 14 6 4.3773 -3.5294 0.3483 15 6 4.3032 -2.0211 0.0035 16 1 5.2444 -1.5582 0.3000 17 6 4.1682 -1.8872 -1.4915 18 6 5.0470 -1.1671 -2.1746 19 6 4.9911 -1.1393 -3.6514 20 6 4.0183 -1.8745 -4.3298 21 6 3.9686 -1.8405 -5.7082 22 6 4.8869 -1.0875 -6.4181 23 6 5.8571 -0.3605 -5.7517 24 6 5.9148 -0.3827 -4.3733 25 1 -0.4851 0.8400 -0.0004 26 1 4.3937 -0.0305 1.8884 27 1 2.6334 0.0403 2.1731 28 1 3.7763 -1.1860 3.9119 29 1 2.6507 -2.2008 2.9999 30 1 5.5226 -2.1870 2.1282 31 1 5.0850 -3.0694 3.6206 32 1 3.0051 -3.7386 2.0127 33 1 4.4858 -4.7087 2.1632 34 1 3.6411 -4.0722 -0.2446 35 1 5.3745 -3.9043 0.1179 36 1 3.3555 -2.3780 -2.0064 37 1 5.8036 -0.6007 -1.6520 38 1 3.3038 -2.4663 -3.7769 39 1 3.2139 -2.4062 -6.2343 40 1 4.8463 -1.0675 -7.4971 41 1 6.5712 0.2249 -6.3117 42 1 6.6730 0.1850 -3.8544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084868318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:56 Heat of formation + Delta-G solvation = 46.019003 kcal Electronic energy + Delta-G solvation = -20997.217758 eV Core-core repulsion = 18135.195575 eV Total energy + Delta-G solvation = -2862.022183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26442 -39.71600 -35.91098 -35.16758 -33.16456 -33.08223 -31.80992 -29.98406 -27.87499 -25.97206 -24.99503 -23.71218 -22.96335 -21.92566 -20.61561 -20.13969 -18.22726 -17.91067 -17.10049 -16.50608 -16.13943 -15.88780 -15.80304 -15.12633 -14.99020 -14.57861 -14.57139 -14.17902 -13.87475 -13.83759 -13.52563 -13.45709 -13.10264 -12.87361 -12.78403 -12.43893 -12.11019 -11.81768 -11.79062 -11.63113 -11.47754 -11.25993 -11.19499 -10.95377 -10.90483 -10.55855 -9.82841 -8.92107 -8.59781 -8.22183 -5.49971 0.11164 0.53341 1.33447 1.43619 1.51930 1.71692 2.47082 2.97600 3.08501 3.48607 3.83817 3.94168 4.00017 4.14720 4.19226 4.24634 4.28051 4.37256 4.50376 4.51864 4.60273 4.64312 4.71115 4.78266 4.90550 4.94630 4.97861 5.12740 5.13109 5.18639 5.21742 5.31295 5.48739 5.50179 5.54603 5.56122 5.62017 5.63692 5.66030 5.88140 5.97569 6.04186 6.17144 6.27431 7.06022 7.69214 8.20574 8.98443 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.006547 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.505442 B = 4276.032172 C = 5196.086784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.305 1.305 5 H -0.302 1.302 6 H -0.236 1.236 7 C -0.238 4.238 8 H 0.033 0.967 9 N -0.598 5.598 10 C 0.137 3.863 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.203 3.797 16 H 0.056 0.944 17 C -0.099 4.099 18 C -0.155 4.155 19 C -0.061 4.061 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.129 4.129 25 H 0.260 0.740 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.711 -3.645 -4.443 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.233 1.233 5 H -0.229 1.229 6 H -0.159 1.159 7 C -0.368 4.368 8 H 0.051 0.949 9 N -0.321 5.321 10 C 0.014 3.986 11 C -0.170 4.170 12 C -0.141 4.141 13 C -0.143 4.143 14 C -0.168 4.168 15 C 0.096 3.904 16 H 0.074 0.926 17 C -0.118 4.118 18 C -0.173 4.173 19 C -0.061 4.061 20 C -0.159 4.159 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.562 -3.552 -4.411 15.625 hybrid contribution -0.801 0.931 -0.119 1.234 sum 13.761 -2.621 -4.530 14.723 Atomic orbital electron populations 1.70121 1.07861 1.27195 1.52859 1.25964 0.95115 1.00366 0.98700 0.86283 0.81726 0.81826 0.76766 1.23320 1.22913 1.15923 1.18279 0.93559 0.93210 1.31759 0.94897 1.44374 1.09333 1.59400 1.18952 1.20692 0.98415 0.94314 0.85165 1.20903 0.99011 0.98418 0.98715 1.20939 0.97113 0.96033 1.00035 1.21361 0.99614 0.98695 0.94589 1.22724 1.00832 0.96877 0.96344 1.19408 0.90745 0.92363 0.87929 0.92590 1.23691 0.95134 0.96163 0.96797 1.21652 1.02088 1.01771 0.91836 1.19336 0.95994 0.97317 0.93442 1.21484 0.98549 1.00403 0.95484 1.21348 0.99746 0.99848 0.93458 1.21520 0.95210 0.97156 1.01129 1.21427 0.99178 0.99342 0.93929 1.21505 0.99000 0.99192 0.94970 0.93135 0.93382 0.94218 0.91676 0.94036 0.91252 0.90084 0.94475 0.91558 0.94276 0.90293 0.89051 0.85989 0.87116 0.84555 0.83407 0.83231 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.59 13.97 21.65 0.30 -58.29 16 2 C 0.00 -0.23 4.95 84.86 0.42 0.19 16 3 Si 0.91 45.73 26.65 68.60 1.83 47.56 16 4 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 5 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.24 -10.82 5.63 99.48 0.56 -10.26 16 7 C -0.24 -13.15 8.36 84.03 0.70 -12.45 16 8 H 0.03 2.05 7.98 -2.91 -0.02 2.03 16 9 N -0.60 -26.91 1.97 -687.73 -1.35 -28.27 16 10 C 0.14 5.56 4.06 83.58 0.34 5.90 16 11 C -0.13 -4.46 5.20 28.36 0.15 -4.32 16 12 C -0.10 -2.90 5.76 29.48 0.17 -2.73 16 13 C -0.10 -3.21 5.63 30.26 0.17 -3.04 16 14 C -0.13 -4.16 5.72 31.87 0.18 -3.98 16 15 C 0.20 7.64 2.06 45.46 0.09 7.73 16 16 H 0.06 1.94 6.50 -2.39 -0.02 1.93 16 17 C -0.10 -3.85 6.87 24.53 0.17 -3.68 16 18 C -0.15 -5.46 9.49 23.65 0.22 -5.23 16 19 C -0.06 -2.04 5.87 -20.12 -0.12 -2.16 16 20 C -0.14 -4.70 9.39 22.52 0.21 -4.49 16 21 C -0.13 -3.45 10.03 22.23 0.22 -3.23 16 22 C -0.13 -3.08 10.04 22.32 0.22 -2.85 16 23 C -0.12 -2.82 10.03 22.23 0.22 -2.59 16 24 C -0.13 -3.57 9.79 22.52 0.22 -3.35 16 25 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.05 1.79 7.60 -2.39 -0.02 1.77 16 27 H 0.04 1.80 5.92 -2.39 -0.01 1.78 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.61 6.91 -2.39 -0.02 1.59 16 30 H 0.07 1.88 6.29 -2.39 -0.02 1.86 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.36 6.81 -2.38 -0.02 1.34 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.39 7.99 -2.39 -0.02 1.37 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 3.89 5.88 -2.91 -0.02 3.88 16 37 H 0.12 3.91 7.86 -2.91 -0.02 3.88 16 38 H 0.11 3.91 6.19 -2.91 -0.02 3.89 16 39 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -65.99 324.72 5.21 -60.78 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.84 Total: 18.50 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.60 Total: -40.28 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -1.05 Total: -86.55 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.83 Total: 47.56 kcal Total: -65.99 5.21 -60.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084868318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.796 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds