Wall clock time and date at job start Mon Mar 30 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99712 * 2 1 4 4 H 1.48506 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47245 * 299.99896 * 3 2 1 6 6 H 1.48494 * 109.46907 * 60.00475 * 3 2 1 7 7 C 1.38804 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00276 * 164.29338 * 7 2 1 9 9 N 1.36941 * 119.99985 * 344.29071 * 7 2 1 10 10 C 1.47600 * 118.64283 * 331.89717 * 9 7 2 11 11 C 1.53954 * 112.14196 * 222.12931 * 10 9 7 12 12 C 1.50886 * 110.09202 * 40.56355 * 11 10 9 13 13 C 1.52571 * 109.35690 * 268.11209 * 12 11 10 14 14 C 1.47093 * 114.32222 * 85.01933 * 13 12 11 15 15 C 1.44578 * 118.64172 * 151.89357 * 9 7 2 16 16 H 1.09004 * 109.44876 * 209.31232 * 15 9 7 17 17 C 1.50693 * 109.45232 * 329.23481 * 15 9 7 18 18 C 1.32563 * 120.00092 * 245.13034 * 17 15 9 19 19 C 1.47819 * 119.99905 * 180.02562 * 18 17 15 20 20 C 1.39528 * 120.14303 * 359.72733 * 19 18 17 21 21 C 1.37970 * 119.85565 * 179.72268 * 20 19 18 22 22 C 1.38344 * 120.14170 * 0.53054 * 21 20 19 23 23 C 1.38343 * 120.28626 * 359.76407 * 22 21 20 24 24 C 1.37970 * 120.14211 * 359.95921 * 23 22 21 25 25 H 0.96998 * 120.00073 * 359.97438 * 1 2 3 26 26 H 1.08998 * 108.95079 * 101.44466 * 10 9 7 27 27 H 1.09005 * 108.87607 * 342.76422 * 10 9 7 28 28 H 1.09002 * 109.36529 * 280.37839 * 11 10 9 29 29 H 1.08988 * 109.36737 * 160.75366 * 11 10 9 30 30 H 1.08999 * 109.48541 * 148.15196 * 12 11 10 31 31 H 1.08995 * 109.49353 * 28.08156 * 12 11 10 32 32 H 1.08999 * 108.51389 * 323.76163 * 13 12 11 33 33 H 1.09001 * 108.51129 * 206.26382 * 13 12 11 34 34 H 1.09002 * 109.32579 * 176.93359 * 14 13 12 35 35 H 1.09000 * 109.33052 * 57.45576 * 14 13 12 36 36 H 1.08005 * 119.99830 * 65.13574 * 17 15 9 37 37 H 1.07995 * 120.00578 * 0.02562 * 18 17 15 38 38 H 1.08001 * 120.06898 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.92984 * 180.27776 * 21 20 19 40 40 H 1.08004 * 119.85745 * 179.74612 * 22 21 20 41 41 H 1.07996 * 119.92702 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.07262 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0601 -1.2194 -0.2537 9 7 1.3640 -2.3660 0.3200 10 6 0.2021 -2.3031 1.2281 11 6 0.2121 -3.4429 2.2630 12 6 1.6148 -3.6699 2.7705 13 6 2.2955 -4.7348 1.9158 14 6 2.9209 -4.2182 0.6888 15 6 1.8480 -3.6057 -0.2450 16 1 1.0181 -4.3044 -0.3516 17 6 2.4544 -3.3375 -1.5982 18 6 1.8966 -3.8472 -2.6874 19 6 2.4918 -3.5845 -4.0147 20 6 3.6375 -2.7958 -4.1251 21 6 4.1914 -2.5591 -5.3663 22 6 3.6071 -3.0929 -6.5010 23 6 2.4676 -3.8707 -6.3990 24 6 1.9070 -4.1196 -5.1631 25 1 -0.4850 0.8400 0.0004 26 1 -0.7121 -2.3688 0.6382 27 1 0.2162 -1.3481 1.7533 28 1 -0.1563 -4.3571 1.7975 29 1 -0.4361 -3.1783 3.0983 30 1 1.5766 -4.0051 3.8069 31 1 2.1788 -2.7392 2.7093 32 1 1.5526 -5.4822 1.6375 33 1 3.0633 -5.2221 2.5168 34 1 3.4269 -5.0332 0.1711 35 1 3.6509 -3.4524 0.9508 36 1 3.3436 -2.7300 -1.6806 37 1 1.0073 -4.4543 -2.6051 38 1 4.0920 -2.3748 -3.2404 39 1 5.0808 -1.9525 -5.4528 40 1 4.0422 -2.9013 -7.4708 41 1 2.0160 -4.2841 -7.2886 42 1 1.0172 -4.7266 -5.0847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084868320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:59 Heat of formation + Delta-G solvation = 50.895606 kcal Electronic energy + Delta-G solvation = -20867.748357 eV Core-core repulsion = 18005.937639 eV Total energy + Delta-G solvation = -2861.810718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.90919 -38.06232 -34.32941 -33.56290 -31.64433 -30.68442 -30.65962 -28.57833 -25.97195 -24.31526 -23.30470 -22.49967 -21.72709 -19.69604 -19.20543 -18.89652 -16.74017 -16.15147 -15.32208 -14.90630 -14.73988 -14.33216 -14.03151 -13.58503 -13.44656 -13.26894 -13.04563 -12.64424 -12.46288 -12.12792 -12.00301 -11.51184 -11.33735 -11.14250 -10.86693 -10.79092 -10.66881 -10.48162 -10.16457 -9.96038 -9.93850 -9.82422 -9.56637 -9.50126 -9.40394 -8.68552 -8.38216 -7.57096 -6.61810 -5.76012 -3.20757 1.36375 1.67983 3.09724 3.37052 3.45642 3.46464 4.27650 4.52252 5.06364 5.14949 5.19293 5.33066 5.37542 5.41311 5.55779 5.58654 5.71368 5.75371 5.79026 5.81663 6.08133 6.13871 6.16544 6.26270 6.35812 6.37510 6.42562 6.62956 6.67960 6.70373 6.73034 6.77094 6.77602 6.83650 6.87298 7.00032 7.12399 7.24519 7.37933 7.43358 7.52807 7.72336 7.84324 8.49025 9.25619 9.91891 10.37974 11.31346 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.006385 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.522435 B = 4384.050089 C = 5608.342329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.579 5.579 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.137 4.137 15 C 0.208 3.792 16 H 0.044 0.956 17 C -0.068 4.068 18 C -0.166 4.166 19 C -0.024 4.024 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.252 0.748 26 H 0.024 0.976 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -8.685 -4.615 10.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.300 5.300 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.099 3.901 16 H 0.062 0.938 17 C -0.087 4.087 18 C -0.185 4.185 19 C -0.024 4.024 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.158 4.158 23 C -0.139 4.139 24 C -0.141 4.141 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.605 -8.545 -4.595 10.740 hybrid contribution 0.317 1.059 -0.059 1.107 sum 4.923 -7.486 -4.654 10.096 Atomic orbital electron populations 1.70074 1.05178 1.25204 1.53944 1.25021 0.95179 0.98205 1.00654 0.86352 0.79463 0.84505 0.77254 1.20279 1.21795 1.21622 1.19088 0.92209 0.84798 1.42336 0.91836 1.43693 1.34388 1.01533 1.50338 1.20986 0.88696 0.95453 0.89252 1.22071 0.96099 1.00495 0.99535 1.20950 0.97086 0.99812 0.96551 1.20300 0.98987 0.97916 0.96674 1.21447 0.99802 0.99629 0.96864 1.19388 0.93171 0.89419 0.88073 0.93827 1.23699 0.97650 0.92675 0.94675 1.21407 1.01064 1.05406 0.90598 1.19188 0.94142 0.95408 0.93641 1.21387 0.96167 0.98507 0.97775 1.21038 0.99928 0.99892 0.92671 1.21060 0.97017 0.99552 0.98141 1.20992 0.96459 0.99208 0.97221 1.21223 1.00021 1.00822 0.92034 0.93805 0.95826 0.90951 0.93783 0.93192 0.94170 0.90774 0.93555 0.94165 0.93453 0.91986 0.87293 0.87179 0.85655 0.86462 0.86761 0.86602 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.13 55.49 0.62 -25.11 16 2 C 0.01 0.23 4.85 -17.43 -0.08 0.14 16 3 Si 0.89 21.55 29.58 -169.99 -5.03 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.62 8.29 -15.06 -0.12 -6.75 16 8 H 0.06 1.64 7.02 -52.48 -0.37 1.27 16 9 N -0.58 -13.67 2.22 -165.79 -0.37 -14.04 16 10 C 0.18 4.22 4.67 -2.94 -0.01 4.21 16 11 C -0.14 -2.68 5.71 -27.29 -0.16 -2.84 16 12 C -0.11 -1.87 5.51 -28.01 -0.15 -2.03 16 13 C -0.10 -1.66 5.15 -29.79 -0.15 -1.81 16 14 C -0.14 -2.41 5.05 -28.58 -0.14 -2.55 16 15 C 0.21 4.18 2.40 -69.13 -0.17 4.02 16 16 H 0.04 0.88 7.74 -51.93 -0.40 0.48 16 17 C -0.07 -1.32 7.09 -36.22 -0.26 -1.58 16 18 C -0.17 -3.00 9.52 -37.57 -0.36 -3.36 16 19 C -0.02 -0.40 5.87 -105.01 -0.62 -1.02 16 20 C -0.12 -1.97 9.40 -39.20 -0.37 -2.34 16 21 C -0.12 -1.66 10.03 -39.64 -0.40 -2.06 16 22 C -0.14 -1.83 10.04 -39.50 -0.40 -2.23 16 23 C -0.12 -1.61 10.03 -39.64 -0.40 -2.00 16 24 C -0.12 -1.84 9.79 -39.19 -0.38 -2.22 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.61 8.02 -51.93 -0.42 0.19 16 27 H 0.07 1.88 6.45 -51.93 -0.34 1.55 16 28 H 0.04 0.79 7.32 -51.93 -0.38 0.41 16 29 H 0.05 0.87 8.14 -51.94 -0.42 0.44 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.49 7.48 -51.93 -0.39 1.10 16 32 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.11 2.13 5.28 -52.48 -0.28 1.86 16 37 H 0.11 1.90 7.87 -52.49 -0.41 1.49 16 38 H 0.13 2.03 6.17 -52.49 -0.32 1.71 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -28.31 329.56 -10.61 -38.92 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.62 Total: 3.16 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -4.17 Total: -24.42 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.25 Total: -39.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.31 -10.61 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084868320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.818 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds