Wall clock time and date at job start Mon Mar 30 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99712 * 2 1 4 4 H 1.48506 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47245 * 299.99896 * 3 2 1 6 6 H 1.48494 * 109.46907 * 60.00475 * 3 2 1 7 7 C 1.38804 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00276 * 164.29338 * 7 2 1 9 9 N 1.36941 * 119.99985 * 344.29071 * 7 2 1 10 10 C 1.47600 * 118.64283 * 331.89717 * 9 7 2 11 11 C 1.53954 * 112.14196 * 222.12931 * 10 9 7 12 12 C 1.50886 * 110.09202 * 40.56355 * 11 10 9 13 13 C 1.52571 * 109.35690 * 268.11209 * 12 11 10 14 14 C 1.47093 * 114.32222 * 85.01933 * 13 12 11 15 15 C 1.44578 * 118.64172 * 151.89357 * 9 7 2 16 16 H 1.09004 * 109.44876 * 209.31232 * 15 9 7 17 17 C 1.50693 * 109.45232 * 329.23481 * 15 9 7 18 18 C 1.32563 * 120.00092 * 245.13034 * 17 15 9 19 19 C 1.47819 * 119.99905 * 180.02562 * 18 17 15 20 20 C 1.39528 * 120.14303 * 359.72733 * 19 18 17 21 21 C 1.37970 * 119.85565 * 179.72268 * 20 19 18 22 22 C 1.38344 * 120.14170 * 0.53054 * 21 20 19 23 23 C 1.38343 * 120.28626 * 359.76407 * 22 21 20 24 24 C 1.37970 * 120.14211 * 359.95921 * 23 22 21 25 25 H 0.96998 * 120.00073 * 359.97438 * 1 2 3 26 26 H 1.08998 * 108.95079 * 101.44466 * 10 9 7 27 27 H 1.09005 * 108.87607 * 342.76422 * 10 9 7 28 28 H 1.09002 * 109.36529 * 280.37839 * 11 10 9 29 29 H 1.08988 * 109.36737 * 160.75366 * 11 10 9 30 30 H 1.08999 * 109.48541 * 148.15196 * 12 11 10 31 31 H 1.08995 * 109.49353 * 28.08156 * 12 11 10 32 32 H 1.08999 * 108.51389 * 323.76163 * 13 12 11 33 33 H 1.09001 * 108.51129 * 206.26382 * 13 12 11 34 34 H 1.09002 * 109.32579 * 176.93359 * 14 13 12 35 35 H 1.09000 * 109.33052 * 57.45576 * 14 13 12 36 36 H 1.08005 * 119.99830 * 65.13574 * 17 15 9 37 37 H 1.07995 * 120.00578 * 0.02562 * 18 17 15 38 38 H 1.08001 * 120.06898 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.92984 * 180.27776 * 21 20 19 40 40 H 1.08004 * 119.85745 * 179.74612 * 22 21 20 41 41 H 1.07996 * 119.92702 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.07262 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0601 -1.2194 -0.2537 9 7 1.3640 -2.3660 0.3200 10 6 0.2021 -2.3031 1.2281 11 6 0.2121 -3.4429 2.2630 12 6 1.6148 -3.6699 2.7705 13 6 2.2955 -4.7348 1.9158 14 6 2.9209 -4.2182 0.6888 15 6 1.8480 -3.6057 -0.2450 16 1 1.0181 -4.3044 -0.3516 17 6 2.4544 -3.3375 -1.5982 18 6 1.8966 -3.8472 -2.6874 19 6 2.4918 -3.5845 -4.0147 20 6 3.6375 -2.7958 -4.1251 21 6 4.1914 -2.5591 -5.3663 22 6 3.6071 -3.0929 -6.5010 23 6 2.4676 -3.8707 -6.3990 24 6 1.9070 -4.1196 -5.1631 25 1 -0.4850 0.8400 0.0004 26 1 -0.7121 -2.3688 0.6382 27 1 0.2162 -1.3481 1.7533 28 1 -0.1563 -4.3571 1.7975 29 1 -0.4361 -3.1783 3.0983 30 1 1.5766 -4.0051 3.8069 31 1 2.1788 -2.7392 2.7093 32 1 1.5526 -5.4822 1.6375 33 1 3.0633 -5.2221 2.5168 34 1 3.4269 -5.0332 0.1711 35 1 3.6509 -3.4524 0.9508 36 1 3.3436 -2.7300 -1.6806 37 1 1.0073 -4.4543 -2.6051 38 1 4.0920 -2.3748 -3.2404 39 1 5.0808 -1.9525 -5.4528 40 1 4.0422 -2.9013 -7.4708 41 1 2.0160 -4.2841 -7.2886 42 1 1.0172 -4.7266 -5.0847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084868320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:59 Heat of formation + Delta-G solvation = 38.992264 kcal Electronic energy + Delta-G solvation = -20868.264524 eV Core-core repulsion = 18005.937639 eV Total energy + Delta-G solvation = -2862.326886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16141 -39.56927 -35.75730 -35.34034 -33.07686 -32.52528 -31.79383 -29.97086 -27.75394 -25.82595 -25.08123 -23.72835 -22.96261 -21.19116 -20.85887 -20.36002 -18.11436 -17.81409 -17.01231 -16.32568 -16.10801 -15.80244 -15.60338 -15.25478 -14.84819 -14.72723 -14.24203 -14.05157 -13.81545 -13.62630 -13.53272 -13.05901 -12.95344 -12.81947 -12.78291 -12.35980 -12.09300 -11.96161 -11.77004 -11.54540 -11.44091 -11.33409 -11.20272 -11.08124 -10.83917 -10.40679 -9.80932 -8.89693 -8.57045 -7.81388 -5.26823 0.13027 0.55257 1.42149 1.45071 1.53456 1.74211 2.53147 3.08329 3.33089 3.66574 3.93329 3.97042 4.02585 4.16656 4.21323 4.28776 4.30617 4.38646 4.54161 4.59661 4.60995 4.65797 4.79215 4.85178 4.99642 5.10235 5.15128 5.20332 5.20883 5.25184 5.34844 5.37672 5.49212 5.53812 5.59907 5.63404 5.65056 5.70155 5.73444 5.83368 5.92241 6.06223 6.18354 6.45767 7.23265 7.99692 8.39421 9.24066 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.006385 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.522435 B = 4384.050089 C = 5608.342329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.189 3.811 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.102 4.102 14 C -0.126 4.126 15 C 0.204 3.796 16 H 0.043 0.957 17 C -0.098 4.098 18 C -0.151 4.151 19 C -0.058 4.058 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.129 4.129 25 H 0.245 0.755 26 H -0.011 1.011 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 -10.326 -5.782 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.080 0.920 9 N -0.311 5.311 10 C 0.065 3.935 11 C -0.170 4.170 12 C -0.140 4.140 13 C -0.139 4.139 14 C -0.166 4.166 15 C 0.097 3.903 16 H 0.061 0.939 17 C -0.117 4.117 18 C -0.170 4.170 19 C -0.058 4.058 20 C -0.157 4.157 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.054 0.946 26 H 0.008 0.992 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.843 -10.219 -5.759 13.105 hybrid contribution -0.031 1.487 0.141 1.494 sum 5.812 -8.733 -5.618 11.899 Atomic orbital electron populations 1.70224 1.06406 1.25139 1.56349 1.25650 0.95834 1.00908 1.01852 0.85467 0.78953 0.81191 0.76514 1.19087 1.22544 1.21903 1.19300 0.92197 0.85762 1.40001 0.91969 1.43874 1.34111 1.02184 1.50953 1.20751 0.87380 0.95855 0.89560 1.21932 0.97679 0.98884 0.98535 1.20910 0.95595 0.99005 0.98500 1.20302 0.99898 0.97644 0.96097 1.21310 0.98553 0.99606 0.97093 1.19567 0.93826 0.87855 0.89011 0.93921 1.23557 0.98460 0.94873 0.94825 1.21611 1.00335 1.03833 0.91194 1.19289 0.95359 0.97498 0.93701 1.21480 0.96557 0.99099 0.98602 1.21349 1.00661 1.00084 0.92187 1.21520 0.96416 0.97905 0.99160 1.21411 0.96292 0.98565 0.97612 1.21487 1.00435 1.00625 0.92153 0.94580 0.99246 0.94424 0.92440 0.91751 0.91316 0.93789 0.92374 0.91587 0.91260 0.93704 0.88155 0.86745 0.86803 0.84350 0.83386 0.83339 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 11.13 21.65 0.24 -55.65 16 2 C -0.05 -2.66 4.85 84.86 0.41 -2.25 16 3 Si 0.95 45.68 29.58 68.60 2.03 47.71 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.00 8.29 84.03 0.70 -12.30 16 8 H 0.06 3.31 7.02 -2.91 -0.02 3.29 16 9 N -0.59 -28.70 2.22 -678.44 -1.51 -30.21 16 10 C 0.19 9.19 4.67 86.49 0.40 9.59 16 11 C -0.13 -4.85 5.71 30.23 0.17 -4.68 16 12 C -0.10 -3.45 5.51 29.76 0.16 -3.28 16 13 C -0.10 -3.09 5.15 28.62 0.15 -2.94 16 14 C -0.13 -4.29 5.05 29.40 0.15 -4.14 16 15 C 0.20 8.29 2.40 45.24 0.11 8.40 16 16 H 0.04 1.72 7.74 -2.38 -0.02 1.71 16 17 C -0.10 -3.91 7.09 24.53 0.17 -3.74 16 18 C -0.15 -5.53 9.52 23.66 0.23 -5.31 16 19 C -0.06 -1.97 5.87 -20.12 -0.12 -2.09 16 20 C -0.14 -4.54 9.40 22.52 0.21 -4.33 16 21 C -0.12 -3.32 10.03 22.23 0.22 -3.09 16 22 C -0.13 -3.02 10.04 22.32 0.22 -2.80 16 23 C -0.12 -2.83 10.03 22.23 0.22 -2.61 16 24 C -0.13 -3.65 9.79 22.52 0.22 -3.43 16 25 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 26 H -0.01 -0.57 8.02 -2.39 -0.02 -0.59 16 27 H 0.04 2.05 6.45 -2.38 -0.02 2.04 16 28 H 0.06 1.97 7.32 -2.39 -0.02 1.95 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.75 7.48 -2.39 -0.02 1.73 16 32 H 0.06 1.65 7.36 -2.39 -0.02 1.63 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 4.11 5.28 -2.91 -0.02 4.09 16 37 H 0.11 3.98 7.87 -2.91 -0.02 3.96 16 38 H 0.11 3.84 6.17 -2.91 -0.02 3.83 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -63.49 329.56 5.37 -58.12 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.98 Total: 19.02 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 3.64 Total: -38.99 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -1.27 Total: -85.86 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -63.49 5.37 -58.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084868320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.109 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds