Wall clock time and date at job start Mon Mar 30 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99758 * 2 1 4 4 H 1.48502 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47274 * 299.99787 * 3 2 1 6 6 H 1.48501 * 109.47413 * 59.99994 * 3 2 1 7 7 C 1.37873 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99477 * 186.65085 * 7 2 1 9 9 C 1.50702 * 120.00299 * 6.37887 * 7 2 1 10 10 C 1.52998 * 115.54591 * 267.99680 * 9 7 2 11 11 N 1.46897 * 109.47410 * 306.42952 * 10 9 7 12 12 C 1.46902 * 111.00219 * 248.56606 * 11 10 9 13 13 H 1.08998 * 109.24538 * 315.51745 * 12 11 10 14 14 C 1.52730 * 109.25145 * 74.94128 * 12 11 10 15 15 C 1.53324 * 108.40284 * 171.33946 * 14 12 11 16 16 C 1.52736 * 108.37779 * 290.14381 * 15 14 12 17 17 C 1.50633 * 110.57971 * 51.14983 * 16 15 14 18 18 C 1.38909 * 117.74448 * 162.48693 * 17 16 15 19 19 C 1.37935 * 120.54063 * 179.43935 * 18 17 16 20 20 C 1.38264 * 119.77062 * 0.02562 * 19 18 17 21 21 C 1.37941 * 119.77477 * 0.13469 * 20 19 18 22 22 C 1.37658 * 122.55946 * 342.15484 * 17 16 15 23 23 C 1.52993 * 117.50018 * 122.33016 * 9 7 2 24 24 C 1.52990 * 117.49919 * 53.66506 * 9 7 2 25 25 H 0.97001 * 120.00127 * 5.00001 * 1 2 3 26 26 H 1.09007 * 109.47414 * 66.42626 * 10 9 7 27 27 H 1.08998 * 109.47261 * 186.42574 * 10 9 7 28 28 H 1.00899 * 111.00604 * 124.60778 * 11 10 9 29 29 H 1.09001 * 109.67909 * 291.07153 * 14 12 11 30 30 H 1.09000 * 109.67911 * 51.61389 * 14 12 11 31 31 H 1.08997 * 109.68500 * 170.41303 * 15 14 12 32 32 H 1.09004 * 109.70612 * 49.87845 * 15 14 12 33 33 H 1.09000 * 109.25358 * 290.86596 * 16 15 14 34 34 H 1.09001 * 109.22122 * 171.41920 * 16 15 14 35 35 H 1.07996 * 119.72815 * 359.41330 * 18 17 16 36 36 H 1.07999 * 120.11589 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.11836 * 180.10476 * 20 19 18 38 38 H 1.07997 * 119.72969 * 179.97438 * 21 20 19 39 39 H 1.09003 * 117.50122 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.50023 * 145.01995 * 23 9 7 41 41 H 1.08997 * 117.49900 * 214.98272 * 24 9 7 42 42 H 1.08997 * 117.50151 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1972 0.1078 9 6 1.2580 -2.4951 -0.1461 10 6 0.8401 -3.1661 1.1638 11 7 2.0157 -3.3227 2.0306 12 6 2.3768 -4.7391 2.1771 13 1 1.4738 -5.3238 2.3527 14 6 3.0475 -5.2232 0.8932 15 6 3.6094 -6.6281 1.1407 16 6 4.7939 -6.5113 2.0979 17 6 4.4118 -5.7152 3.3183 18 6 5.2242 -5.8214 4.4400 19 6 4.9347 -5.1089 5.5851 20 6 3.8268 -4.2824 5.6177 21 6 3.0170 -4.1781 4.5059 22 6 3.3063 -4.8957 3.3520 23 6 1.6450 -3.4048 -1.3138 24 6 0.3191 -2.6404 -1.3452 25 1 -0.4850 0.8368 -0.0732 26 1 0.0969 -2.5481 1.6678 27 1 0.4131 -4.1459 0.9500 28 1 1.8610 -2.8940 2.9308 29 1 2.3149 -5.2576 0.0868 30 1 3.8581 -4.5458 0.6246 31 1 3.9410 -7.0623 0.1975 32 1 2.8394 -7.2590 1.5847 33 1 5.6198 -6.0147 1.5888 34 1 5.1080 -7.5093 2.4035 35 1 6.0893 -6.4674 4.4156 36 1 5.5712 -5.1963 6.4532 37 1 3.5958 -3.7206 6.5107 38 1 2.1515 -3.5327 4.5322 39 1 2.4392 -3.0621 -1.9770 40 1 1.6014 -4.4814 -1.1489 41 1 -0.5962 -3.2145 -1.2011 42 1 0.2415 -1.7953 -2.0291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:10 Heat of formation + Delta-G solvation = 32.054345 kcal Electronic energy + Delta-G solvation = -21074.446876 eV Core-core repulsion = 18211.819140 eV Total energy + Delta-G solvation = -2862.627736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09869 -38.80121 -36.99010 -35.42202 -33.83958 -31.96667 -31.07813 -29.19460 -27.50737 -26.01110 -24.06498 -23.65480 -22.68114 -22.25350 -20.83401 -20.15945 -17.85238 -17.83634 -16.59396 -16.44154 -16.34847 -16.02529 -15.57033 -15.39090 -14.90630 -14.65186 -14.46924 -14.07083 -13.86755 -13.42108 -13.22947 -12.96935 -12.93261 -12.81001 -12.62366 -12.45778 -12.29803 -12.14728 -11.95917 -11.75574 -11.41854 -11.27829 -10.96321 -10.63668 -10.35623 -9.83917 -9.65467 -9.47597 -8.93399 -8.00829 -6.05880 0.51144 0.52722 1.39592 1.43138 1.53742 2.49158 2.87672 3.26953 3.36491 3.69453 3.77679 3.84208 4.06201 4.19894 4.22514 4.30993 4.41686 4.43838 4.49030 4.50630 4.60168 4.69830 4.77216 4.80927 4.92599 4.98789 5.05790 5.07965 5.11946 5.15431 5.21420 5.24118 5.32759 5.42076 5.54847 5.64851 5.66918 5.75050 5.77717 5.83187 5.89603 6.18264 6.41209 6.65101 6.69337 6.99660 7.58822 9.07649 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.005693 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.332606 B = 4916.876755 C = 5690.068348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.466 4.466 8 H 0.042 0.958 9 C 0.036 3.964 10 C 0.118 3.882 11 N -0.672 5.672 12 C 0.132 3.868 13 H 0.037 0.963 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.077 4.077 17 C -0.082 4.082 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.188 4.188 24 C -0.166 4.166 25 H 0.254 0.746 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.332 0.668 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 -14.451 8.536 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.035 3.965 10 C -0.011 4.011 11 N -0.304 5.304 12 C 0.023 3.977 13 H 0.055 0.945 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.114 4.114 17 C -0.083 4.083 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.085 4.085 23 C -0.225 4.225 24 C -0.205 4.205 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.152 0.848 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.407 -14.198 8.103 18.382 hybrid contribution -0.814 1.308 0.387 1.588 sum 7.593 -12.890 8.489 17.201 Atomic orbital electron populations 1.70140 1.06684 1.26633 1.51927 1.25538 0.95455 1.01280 0.95602 0.85809 0.79211 0.81176 0.77213 1.19816 1.20979 1.21166 1.20559 0.92307 0.90164 1.47404 0.93949 1.18923 0.97457 0.93793 0.86303 1.21292 0.89528 0.95948 0.94339 1.60249 1.39578 1.13250 1.17317 1.20376 0.95100 0.88656 0.93536 0.94525 1.21686 1.00220 0.96523 0.96167 1.21556 0.97754 0.95785 1.00062 1.20518 0.98358 0.99805 0.92724 1.19887 0.94086 0.97550 0.96769 1.21445 0.99889 1.00577 0.92623 1.21384 0.97385 0.96611 0.98935 1.21291 0.95639 0.99583 0.98369 1.21246 1.00687 0.99545 0.93720 1.19719 0.96564 0.97569 0.94644 1.23111 0.97548 0.96727 1.05081 1.22389 0.92448 1.00653 1.04973 0.93667 0.95344 0.94810 0.84778 0.91644 0.92892 0.89777 0.91601 0.90544 0.88650 0.83783 0.83597 0.84529 0.86886 0.91504 0.88983 0.91275 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.17 12.57 21.45 0.27 -52.90 16 2 C 0.02 1.08 5.36 84.65 0.45 1.54 16 3 Si 0.94 45.15 29.55 68.60 2.03 47.18 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.47 -26.00 8.53 25.60 0.22 -25.78 16 8 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 9 C 0.04 1.79 1.77 -52.93 -0.09 1.70 16 10 C 0.12 5.22 5.46 86.30 0.47 5.69 16 11 N -0.67 -26.80 5.88 -496.04 -2.92 -29.72 16 12 C 0.13 4.37 2.35 44.06 0.10 4.47 16 13 H 0.04 1.21 7.70 -2.39 -0.02 1.19 16 14 C -0.11 -3.36 4.87 30.61 0.15 -3.21 16 15 C -0.11 -2.59 5.98 30.61 0.18 -2.41 16 16 C -0.08 -1.63 5.67 29.74 0.17 -1.46 16 17 C -0.08 -2.11 5.74 -19.86 -0.11 -2.23 16 18 C -0.13 -2.75 9.61 22.36 0.21 -2.53 16 19 C -0.13 -2.62 10.05 22.20 0.22 -2.40 16 20 C -0.13 -3.13 10.05 22.21 0.22 -2.91 16 21 C -0.13 -3.84 9.00 22.36 0.20 -3.64 16 22 C -0.08 -2.55 5.55 -19.86 -0.11 -2.66 16 23 C -0.19 -8.16 9.04 30.62 0.28 -7.88 16 24 C -0.17 -8.02 9.06 30.62 0.28 -7.74 16 25 H 0.25 14.23 8.32 -92.71 -0.77 13.46 16 26 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.03 1.36 7.16 -2.39 -0.02 1.35 16 28 H 0.33 12.89 6.30 -89.69 -0.57 12.33 16 29 H 0.07 2.13 4.66 -2.39 -0.01 2.12 16 30 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.43 8.10 -2.38 -0.02 1.41 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.51 8.13 -2.39 -0.02 1.49 16 35 H 0.14 2.25 8.05 -2.91 -0.02 2.23 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.11 3.27 6.41 -2.91 -0.02 3.25 16 39 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.09 3.47 5.67 -2.39 -0.01 3.46 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.05 2.88 8.10 -2.39 -0.02 2.86 16 Total: -1.00 -62.62 328.75 2.66 -59.95 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.44 Total: 26.95 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 2.85 Total: -51.46 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.65 Total: -82.62 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -62.62 2.66 -59.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.007 kcal (2) G-P(sol) polarization free energy of solvation -62.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds