Wall clock time and date at job start Mon Mar 30 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99588 * 2 1 4 4 H 1.48501 * 109.46854 * 239.99787 * 3 2 1 5 5 H 1.48493 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47298 * 120.00126 * 3 2 1 7 7 C 1.37873 * 120.00673 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00498 * 171.76333 * 7 2 1 9 9 C 1.50707 * 119.99736 * 351.75980 * 7 2 1 10 10 C 1.52992 * 115.56183 * 80.29416 * 9 7 2 11 11 N 1.46902 * 109.47271 * 38.97642 * 10 9 7 12 12 C 1.46900 * 111.00155 * 184.60958 * 11 10 9 13 13 H 1.09001 * 109.67644 * 325.52071 * 12 11 10 14 14 C 1.53330 * 109.68178 * 205.00671 * 12 11 10 15 15 C 1.52735 * 108.38537 * 170.41040 * 14 12 11 16 16 C 1.50624 * 110.59048 * 51.09456 * 15 14 12 17 17 C 1.38914 * 117.75210 * 162.26888 * 16 15 14 18 18 C 1.37931 * 120.54675 * 179.76156 * 17 16 15 19 19 C 1.38271 * 119.76974 * 359.96661 * 18 17 16 20 20 C 1.37927 * 119.77359 * 0.12009 * 19 18 17 21 21 C 1.37660 * 122.56611 * 342.23034 * 16 15 14 22 22 C 1.50630 * 122.56264 * 0.72123 * 21 16 15 23 23 C 1.52995 * 117.49922 * 225.98527 * 9 7 2 24 24 C 1.52996 * 60.00378 * 107.48961 * 23 9 7 25 25 H 0.96993 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47287 * 158.98473 * 10 9 7 27 27 H 1.09008 * 109.47327 * 278.98081 * 10 9 7 28 28 H 1.00901 * 110.99294 * 60.65845 * 11 10 9 29 29 H 1.09004 * 109.67319 * 290.13076 * 14 12 11 30 30 H 1.08996 * 109.68312 * 50.64112 * 14 12 11 31 31 H 1.09003 * 109.24882 * 171.38774 * 15 14 12 32 32 H 1.09006 * 109.25067 * 290.80748 * 15 14 12 33 33 H 1.08002 * 119.72718 * 359.79459 * 17 16 15 34 34 H 1.07997 * 120.11682 * 179.97438 * 18 17 16 35 35 H 1.07998 * 120.11278 * 180.09031 * 19 18 17 36 36 H 1.08000 * 119.73440 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.25534 * 221.93044 * 22 21 16 38 38 H 1.09000 * 109.24673 * 102.50670 * 22 21 16 39 39 H 1.09002 * 117.50074 * 214.97591 * 23 9 7 40 40 H 1.09001 * 117.50437 * 359.97438 * 23 9 7 41 41 H 1.09003 * 117.50029 * 252.51349 * 24 23 9 42 42 H 1.08999 * 117.52313 * 107.48216 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0762 -1.1987 -0.1345 9 6 1.2629 -2.4925 0.1859 10 6 0.5686 -3.0413 -1.0621 11 7 1.4218 -2.8152 -2.2364 12 6 0.7407 -3.2309 -3.4698 13 1 0.1148 -4.1003 -3.2683 14 6 1.7804 -3.5803 -4.5412 15 6 1.0584 -4.2321 -5.7187 16 6 -0.1057 -3.3847 -6.1612 17 6 -0.6333 -3.6194 -7.4246 18 6 -1.7026 -2.8804 -7.8860 19 6 -2.2551 -1.8981 -7.0849 20 6 -1.7315 -1.6623 -5.8308 21 6 -0.6526 -2.4035 -5.3655 22 6 -0.1227 -2.0844 -3.9921 23 6 1.8487 -3.5055 1.1715 24 6 0.5814 -2.7294 1.5352 25 1 -0.4850 0.8400 0.0004 26 1 0.3938 -4.1102 -0.9402 27 1 -0.3844 -2.5309 -1.2018 28 1 2.3078 -3.2874 -2.1358 29 1 2.2823 -2.6722 -4.8754 30 1 2.5131 -4.2742 -4.1293 31 1 1.7555 -4.3469 -6.5488 32 1 0.6940 -5.2144 -5.4177 33 1 -0.2030 -4.3872 -8.0505 34 1 -2.1071 -3.0684 -8.8696 35 1 -3.0934 -1.3172 -7.4401 36 1 -2.1637 -0.8952 -5.2054 37 1 -0.9594 -1.9259 -3.3118 38 1 0.4774 -1.1758 -4.0406 39 1 1.7396 -4.5630 0.9308 40 1 2.7709 -3.2330 1.6848 41 1 0.6696 -1.9460 2.2880 42 1 -0.3617 -3.2758 1.5337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:09 Heat of formation + Delta-G solvation = 37.267777 kcal Electronic energy + Delta-G solvation = -20686.164352 eV Core-core repulsion = 17823.762687 eV Total energy + Delta-G solvation = -2862.401665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86169 -37.23910 -35.97960 -33.07870 -31.94892 -31.74649 -29.42967 -28.00626 -25.46012 -24.46789 -22.91801 -21.96523 -21.50774 -21.00469 -19.22173 -18.71350 -16.39922 -15.89223 -15.50129 -15.19052 -14.62875 -14.37708 -14.18182 -13.73695 -13.48466 -13.31464 -12.99293 -12.69284 -12.61512 -12.30397 -11.89698 -11.76174 -11.33311 -11.22997 -11.16544 -10.86210 -10.69891 -10.53676 -10.46251 -10.34436 -10.09673 -10.01505 -9.36546 -8.73721 -8.61705 -8.34890 -8.26116 -7.96818 -7.33887 -5.85873 -3.85023 1.49328 1.53266 3.41571 3.45376 3.48783 3.89009 4.55190 4.71402 4.79039 5.00958 5.10945 5.13938 5.31532 5.37468 5.42582 5.45752 5.49251 5.55864 5.77167 5.81669 5.85846 5.97706 6.11145 6.19114 6.20734 6.27866 6.32842 6.33665 6.51596 6.59882 6.60953 6.64659 6.65338 6.76620 6.78192 6.93786 7.03991 7.13896 7.19079 7.49117 7.54413 8.05764 8.14487 8.36339 8.63896 9.09672 9.76843 11.24999 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.005085 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.520095 B = 5504.574722 C = 6154.786130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.077 3.923 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.464 4.464 8 H 0.055 0.945 9 C 0.052 3.948 10 C 0.111 3.889 11 N -0.652 5.652 12 C 0.092 3.908 13 H 0.032 0.968 14 C -0.119 4.119 15 C -0.076 4.076 16 C -0.081 4.081 17 C -0.123 4.123 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.060 4.060 22 C -0.070 4.070 23 C -0.218 4.218 24 C -0.166 4.166 25 H 0.255 0.745 26 H -0.010 1.010 27 H 0.072 0.928 28 H 0.332 0.668 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 -7.329 -12.678 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.052 3.948 10 C -0.018 4.018 11 N -0.281 5.281 12 C -0.018 4.018 13 H 0.050 0.950 14 C -0.157 4.157 15 C -0.114 4.114 16 C -0.081 4.081 17 C -0.141 4.141 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.061 4.061 22 C -0.107 4.107 23 C -0.255 4.255 24 C -0.204 4.204 25 H 0.065 0.935 26 H 0.008 0.992 27 H 0.090 0.910 28 H 0.150 0.850 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.136 -6.536 -12.734 14.471 hybrid contribution 0.273 0.022 0.077 0.284 sum -1.863 -6.514 -12.657 14.356 Atomic orbital electron populations 1.69985 1.05771 1.25955 1.50227 1.24800 0.94580 0.98299 0.94858 0.86820 0.79722 0.83893 0.78392 1.20341 1.21679 1.20692 1.20079 0.92658 0.88405 1.49009 0.92691 1.18899 0.96440 0.93579 0.85923 1.21490 0.96749 0.93399 0.90187 1.60202 1.05505 1.62225 1.00210 1.21373 0.94578 0.95002 0.90882 0.94983 1.21736 0.97706 1.01040 0.95253 1.20443 0.94720 0.97864 0.98350 1.19647 0.97477 0.96984 0.93989 1.21098 0.97257 1.00054 0.95729 1.20967 0.97302 0.97160 0.99639 1.21027 1.00142 0.98469 0.94656 1.21246 0.96578 0.99841 0.96198 1.19911 0.94978 0.94689 0.96502 1.20483 0.99819 0.99698 0.90732 1.23053 0.97587 0.95453 1.09439 1.22547 0.93127 1.01543 1.03178 0.93502 0.99225 0.90954 0.85035 0.90854 0.91684 0.91032 0.91041 0.86634 0.86606 0.86473 0.86056 0.90568 0.89338 0.92134 0.90619 0.90279 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.81 13.19 55.43 0.73 -24.08 16 2 C 0.08 2.09 5.41 -17.82 -0.10 1.99 16 3 Si 0.88 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.46 -12.37 8.11 -34.44 -0.28 -12.65 16 8 H 0.05 1.49 7.83 -52.49 -0.41 1.08 16 9 C 0.05 1.26 1.65 -155.66 -0.26 1.00 16 10 C 0.11 2.45 5.55 -3.83 -0.02 2.43 16 11 N -0.65 -12.96 5.60 -106.69 -0.60 -13.56 16 12 C 0.09 1.55 2.51 -67.68 -0.17 1.38 16 13 H 0.03 0.55 7.81 -51.93 -0.41 0.15 16 14 C -0.12 -1.66 5.36 -26.70 -0.14 -1.80 16 15 C -0.08 -0.93 5.67 -28.06 -0.16 -1.09 16 16 C -0.08 -1.12 5.74 -104.62 -0.60 -1.72 16 17 C -0.12 -1.50 9.61 -39.44 -0.38 -1.88 16 18 C -0.13 -1.55 10.05 -39.68 -0.40 -1.95 16 19 C -0.12 -1.55 10.05 -39.68 -0.40 -1.95 16 20 C -0.12 -1.73 9.61 -39.44 -0.38 -2.10 16 21 C -0.06 -0.92 5.74 -104.61 -0.60 -1.52 16 22 C -0.07 -1.21 5.14 -28.06 -0.14 -1.36 16 23 C -0.22 -4.72 9.88 -26.74 -0.26 -4.98 16 24 C -0.17 -3.88 9.79 -26.73 -0.26 -4.14 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H -0.01 -0.21 7.94 -51.93 -0.41 -0.62 16 27 H 0.07 1.77 7.59 -51.92 -0.39 1.38 16 28 H 0.33 6.25 8.29 -39.29 -0.33 5.92 16 29 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 31 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.14 8.05 -52.49 -0.42 0.72 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.66 8.05 -52.49 -0.42 1.24 16 37 H 0.08 1.45 7.67 -51.93 -0.40 1.05 16 38 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 39 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -28.14 340.11 -11.28 -39.41 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.96 Total: 7.05 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -4.55 Total: -30.35 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.13 Total: -37.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.14 -11.28 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.680 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds