Wall clock time and date at job start Mon Mar 30 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99588 * 2 1 4 4 H 1.48501 * 109.46854 * 239.99787 * 3 2 1 5 5 H 1.48493 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47298 * 120.00126 * 3 2 1 7 7 C 1.37873 * 120.00673 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00498 * 171.76333 * 7 2 1 9 9 C 1.50707 * 119.99736 * 351.75980 * 7 2 1 10 10 C 1.52992 * 115.56183 * 80.29416 * 9 7 2 11 11 N 1.46902 * 109.47271 * 38.97642 * 10 9 7 12 12 C 1.46900 * 111.00155 * 184.60958 * 11 10 9 13 13 H 1.09001 * 109.67644 * 325.52071 * 12 11 10 14 14 C 1.53330 * 109.68178 * 205.00671 * 12 11 10 15 15 C 1.52735 * 108.38537 * 170.41040 * 14 12 11 16 16 C 1.50624 * 110.59048 * 51.09456 * 15 14 12 17 17 C 1.38914 * 117.75210 * 162.26888 * 16 15 14 18 18 C 1.37931 * 120.54675 * 179.76156 * 17 16 15 19 19 C 1.38271 * 119.76974 * 359.96661 * 18 17 16 20 20 C 1.37927 * 119.77359 * 0.12009 * 19 18 17 21 21 C 1.37660 * 122.56611 * 342.23034 * 16 15 14 22 22 C 1.50630 * 122.56264 * 0.72123 * 21 16 15 23 23 C 1.52995 * 117.49922 * 225.98527 * 9 7 2 24 24 C 1.52996 * 60.00378 * 107.48961 * 23 9 7 25 25 H 0.96993 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47287 * 158.98473 * 10 9 7 27 27 H 1.09008 * 109.47327 * 278.98081 * 10 9 7 28 28 H 1.00901 * 110.99294 * 60.65845 * 11 10 9 29 29 H 1.09004 * 109.67319 * 290.13076 * 14 12 11 30 30 H 1.08996 * 109.68312 * 50.64112 * 14 12 11 31 31 H 1.09003 * 109.24882 * 171.38774 * 15 14 12 32 32 H 1.09006 * 109.25067 * 290.80748 * 15 14 12 33 33 H 1.08002 * 119.72718 * 359.79459 * 17 16 15 34 34 H 1.07997 * 120.11682 * 179.97438 * 18 17 16 35 35 H 1.07998 * 120.11278 * 180.09031 * 19 18 17 36 36 H 1.08000 * 119.73440 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.25534 * 221.93044 * 22 21 16 38 38 H 1.09000 * 109.24673 * 102.50670 * 22 21 16 39 39 H 1.09002 * 117.50074 * 214.97591 * 23 9 7 40 40 H 1.09001 * 117.50437 * 359.97438 * 23 9 7 41 41 H 1.09003 * 117.50029 * 252.51349 * 24 23 9 42 42 H 1.08999 * 117.52313 * 107.48216 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0762 -1.1987 -0.1345 9 6 1.2629 -2.4925 0.1859 10 6 0.5686 -3.0413 -1.0621 11 7 1.4218 -2.8152 -2.2364 12 6 0.7407 -3.2309 -3.4698 13 1 0.1148 -4.1003 -3.2683 14 6 1.7804 -3.5803 -4.5412 15 6 1.0584 -4.2321 -5.7187 16 6 -0.1057 -3.3847 -6.1612 17 6 -0.6333 -3.6194 -7.4246 18 6 -1.7026 -2.8804 -7.8860 19 6 -2.2551 -1.8981 -7.0849 20 6 -1.7315 -1.6623 -5.8308 21 6 -0.6526 -2.4035 -5.3655 22 6 -0.1227 -2.0844 -3.9921 23 6 1.8487 -3.5055 1.1715 24 6 0.5814 -2.7294 1.5352 25 1 -0.4850 0.8400 0.0004 26 1 0.3938 -4.1102 -0.9402 27 1 -0.3844 -2.5309 -1.2018 28 1 2.3078 -3.2874 -2.1358 29 1 2.2823 -2.6722 -4.8754 30 1 2.5131 -4.2742 -4.1293 31 1 1.7555 -4.3469 -6.5488 32 1 0.6940 -5.2144 -5.4177 33 1 -0.2030 -4.3872 -8.0505 34 1 -2.1071 -3.0684 -8.8696 35 1 -3.0934 -1.3172 -7.4401 36 1 -2.1637 -0.8952 -5.2054 37 1 -0.9594 -1.9259 -3.3118 38 1 0.4774 -1.1758 -4.0406 39 1 1.7396 -4.5630 0.9308 40 1 2.7709 -3.2330 1.6848 41 1 0.6696 -1.9460 2.2880 42 1 -0.3617 -3.2758 1.5337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:09 Heat of formation + Delta-G solvation = 23.779004 kcal Electronic energy + Delta-G solvation = -20686.749269 eV Core-core repulsion = 17823.762687 eV Total energy + Delta-G solvation = -2862.986582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95290 -38.86007 -37.41964 -34.36439 -33.83951 -33.10821 -30.55872 -29.23972 -27.45855 -26.08266 -24.08463 -23.01750 -22.96504 -22.60912 -20.95491 -20.10302 -17.94058 -17.37407 -16.74737 -16.49000 -16.30363 -16.00090 -15.44036 -15.02774 -14.95407 -14.85341 -14.24047 -14.14839 -13.76542 -13.65615 -13.51784 -13.13489 -12.93387 -12.83753 -12.63817 -12.38876 -12.33032 -12.25035 -11.98469 -11.77794 -11.61021 -11.26256 -11.16488 -10.67766 -10.30407 -9.85735 -9.62471 -9.40690 -8.92120 -7.95956 -5.99027 0.49701 0.50167 1.45079 1.45970 1.51573 2.52262 2.87823 3.28969 3.38489 3.56613 3.73521 3.91053 4.09677 4.15176 4.20123 4.28388 4.34336 4.45332 4.51049 4.54085 4.61909 4.71090 4.75996 4.76712 4.84192 4.93585 5.00510 5.03642 5.06348 5.12237 5.17695 5.19340 5.29734 5.36927 5.39659 5.62623 5.64000 5.65943 5.72231 5.83869 5.92891 6.18064 6.44237 6.62783 6.88010 7.02165 7.64720 9.13736 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.005085 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.520095 B = 5504.574722 C = 6154.786130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.032 3.968 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.047 0.953 9 C 0.024 3.976 10 C 0.126 3.874 11 N -0.666 5.666 12 C 0.095 3.905 13 H 0.032 0.968 14 C -0.112 4.112 15 C -0.072 4.072 16 C -0.090 4.090 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.087 4.087 22 C -0.058 4.058 23 C -0.188 4.188 24 C -0.175 4.175 25 H 0.251 0.749 26 H 0.006 0.994 27 H 0.037 0.963 28 H 0.339 0.661 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -9.187 -14.861 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.003 4.003 11 N -0.297 5.297 12 C -0.015 4.015 13 H 0.049 0.951 14 C -0.150 4.150 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.088 4.088 22 C -0.096 4.096 23 C -0.225 4.225 24 C -0.213 4.213 25 H 0.060 0.940 26 H 0.024 0.976 27 H 0.056 0.944 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.307 -8.399 -14.914 17.166 hybrid contribution -0.006 0.590 0.724 0.934 sum -1.312 -7.809 -14.190 16.250 Atomic orbital electron populations 1.70103 1.06857 1.26129 1.51645 1.25400 0.95204 1.00984 0.95106 0.85989 0.78597 0.80776 0.78380 1.20242 1.21854 1.20075 1.20302 0.92420 0.89773 1.48005 0.93446 1.19035 0.97682 0.93967 0.87005 1.21168 0.95297 0.93543 0.90314 1.60076 1.05848 1.63185 1.00610 1.21392 0.95260 0.94358 0.90492 0.95054 1.21675 0.97134 1.01164 0.94990 1.20479 0.94470 0.97688 0.98241 1.19899 0.97988 0.96505 0.94576 1.21461 0.97069 1.00469 0.95102 1.21407 0.96586 0.95870 1.00660 1.21316 1.00607 0.98947 0.93736 1.21336 0.97054 1.00137 0.97441 1.19796 0.96445 0.96813 0.95740 1.20258 0.98339 0.98950 0.92083 1.23041 0.96467 0.96292 1.06740 1.22475 0.94669 1.01851 1.02309 0.93982 0.97645 0.94440 0.84233 0.91997 0.89903 0.88334 0.89731 0.83520 0.83324 0.84292 0.87109 0.93864 0.92379 0.89321 0.90386 0.92419 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 13.19 21.45 0.28 -52.74 16 2 C 0.03 1.79 5.41 84.65 0.46 2.25 16 3 Si 0.94 44.89 29.55 68.60 2.03 46.91 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.47 -25.28 8.11 25.60 0.21 -25.07 16 8 H 0.05 2.58 7.83 -2.92 -0.02 2.56 16 9 C 0.02 1.15 1.65 -52.93 -0.09 1.07 16 10 C 0.13 5.68 5.55 86.30 0.48 6.16 16 11 N -0.67 -26.94 5.60 -491.47 -2.75 -29.69 16 12 C 0.09 3.23 2.51 44.93 0.11 3.35 16 13 H 0.03 1.08 7.81 -2.39 -0.02 1.06 16 14 C -0.11 -2.95 5.36 30.62 0.16 -2.78 16 15 C -0.07 -1.54 5.67 29.74 0.17 -1.37 16 16 C -0.09 -2.31 5.74 -19.86 -0.11 -2.42 16 17 C -0.12 -2.57 9.61 22.36 0.21 -2.35 16 18 C -0.13 -2.55 10.05 22.20 0.22 -2.33 16 19 C -0.13 -2.99 10.05 22.20 0.22 -2.77 16 20 C -0.14 -4.16 9.61 22.36 0.21 -3.95 16 21 C -0.09 -2.74 5.74 -19.86 -0.11 -2.86 16 22 C -0.06 -2.17 5.14 29.73 0.15 -2.02 16 23 C -0.19 -7.86 9.88 30.59 0.30 -7.56 16 24 C -0.17 -8.23 9.79 30.59 0.30 -7.93 16 25 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.01 0.23 7.94 -2.39 -0.02 0.21 16 27 H 0.04 1.93 7.59 -2.38 -0.02 1.91 16 28 H 0.34 12.61 8.29 -89.69 -0.74 11.86 16 29 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.08 1.89 7.94 -2.39 -0.02 1.87 16 31 H 0.10 1.63 8.12 -2.39 -0.02 1.62 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.15 2.14 8.05 -2.91 -0.02 2.11 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.11 3.32 8.05 -2.91 -0.02 3.30 16 37 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.09 3.21 8.08 -2.39 -0.02 3.19 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -62.24 340.11 2.71 -59.53 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.24 Total: 26.58 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 2.91 Total: -50.59 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.47 Total: -82.43 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.24 2.71 -59.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.307 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds