Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48496 * 109.47457 * 240.00230 * 3 2 1 5 5 H 1.48499 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47055 * 119.99972 * 3 2 1 7 7 C 1.37873 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00018 * 171.38843 * 7 2 1 9 9 C 1.50702 * 120.00030 * 351.39477 * 7 2 1 10 10 C 1.53006 * 115.54696 * 324.20240 * 9 7 2 11 11 N 1.46901 * 109.47020 * 306.03394 * 10 9 7 12 12 C 1.43425 * 111.00003 * 289.99207 * 11 10 9 13 13 C 1.50732 * 112.80267 * 319.06432 * 12 11 10 14 14 C 1.51782 * 112.52551 * 295.24799 * 13 12 11 15 15 C 1.41070 * 110.38069 * 219.70501 * 14 13 12 16 16 C 1.37169 * 121.78981 * 179.97438 * 15 14 13 17 17 C 1.38327 * 118.97257 * 0.02562 * 16 15 14 18 18 C 1.37167 * 118.97063 * 0.03024 * 17 16 15 19 19 C 1.33391 * 130.38269 * 39.74352 * 14 13 12 20 20 C 1.51791 * 130.38771 * 0.02562 * 19 14 13 21 21 C 1.43427 * 110.99910 * 160.85380 * 11 10 9 22 22 C 1.52992 * 117.50291 * 109.87683 * 9 7 2 23 23 C 1.52998 * 117.50042 * 178.53824 * 9 7 2 24 24 H 0.97009 * 120.00156 * 5.01003 * 1 2 3 25 25 H 1.08997 * 109.47188 * 186.03207 * 10 9 7 26 26 H 1.08998 * 109.46768 * 66.03261 * 10 9 7 27 27 H 1.09001 * 108.81431 * 79.91676 * 12 11 10 28 28 H 1.08992 * 108.81633 * 198.20515 * 12 11 10 29 29 H 1.09007 * 108.86882 * 56.02533 * 13 12 11 30 30 H 1.09000 * 108.87205 * 174.45332 * 13 12 11 31 31 H 1.07993 * 119.10346 * 0.02562 * 15 14 13 32 32 H 1.08005 * 120.50990 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.51985 * 180.02562 * 17 16 15 34 34 H 1.07993 * 119.10979 * 179.97438 * 18 17 16 35 35 H 1.08998 * 108.87469 * 199.44154 * 20 19 14 36 36 H 1.09000 * 108.86784 * 81.01240 * 20 19 14 37 37 H 1.08993 * 108.81695 * 161.79743 * 21 11 10 38 38 H 1.09003 * 108.81359 * 280.08721 * 21 11 10 39 39 H 1.09007 * 117.49791 * 215.00323 * 22 9 7 40 40 H 1.08996 * 117.49966 * 0.02562 * 22 9 7 41 41 H 1.09004 * 117.49820 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49995 * 144.96593 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0754 -1.1992 -0.1406 9 6 1.2637 -2.4919 0.1942 10 6 0.0798 -2.4371 1.1618 11 7 0.5253 -1.8898 2.4502 12 6 1.3786 -2.8171 3.1351 13 6 0.8984 -4.2418 3.0278 14 6 -0.4371 -4.4587 3.7156 15 6 -0.4480 -5.6990 4.3876 16 6 -1.5444 -6.1310 5.0895 17 6 -2.6688 -5.3266 5.1376 18 6 -2.6526 -4.1223 4.4813 19 6 -1.5216 -3.6834 3.7614 20 6 -1.7854 -2.3235 3.1407 21 6 -0.5877 -1.4115 3.2180 22 6 1.1484 -3.4272 -1.0110 23 6 2.0803 -3.7850 0.1494 24 1 -0.4851 0.8369 -0.0734 25 1 -0.3144 -3.4423 1.3109 26 1 -0.7000 -1.7990 0.7461 27 1 2.3809 -2.7511 2.7118 28 1 1.4252 -2.5401 4.1882 29 1 0.7985 -4.5017 1.9739 30 1 1.6399 -4.8990 3.4821 31 1 0.4312 -6.3250 4.3490 32 1 -1.5300 -7.0843 5.5969 33 1 -3.5458 -5.6420 5.6833 34 1 -3.5294 -3.4927 4.5170 35 1 -2.6200 -1.8542 3.6614 36 1 -2.0575 -2.4606 2.0941 37 1 -0.2824 -1.3195 4.2602 38 1 -0.8718 -0.4260 2.8488 39 1 0.2290 -4.0036 -1.1146 40 1 1.6087 -3.1041 -1.9447 41 1 3.1533 -3.6970 -0.0213 42 1 1.7743 -4.5965 0.8096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = 76.010756 kcal Electronic energy + Delta-G solvation = -21896.679148 eV Core-core repulsion = 19035.957505 eV Total energy + Delta-G solvation = -2860.721643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17803 -37.84980 -35.51635 -33.24895 -32.00990 -31.63358 -29.41772 -27.06386 -25.35817 -25.16307 -23.92004 -22.27017 -21.19496 -20.11187 -19.30714 -18.35168 -16.42092 -15.91910 -15.41437 -14.95960 -14.89857 -14.55308 -14.40471 -14.10096 -13.27551 -13.12388 -12.92039 -12.36809 -12.27564 -12.18630 -11.76024 -11.38720 -11.18319 -10.97741 -10.93093 -10.82268 -10.78488 -10.51194 -10.43615 -10.04036 -9.89442 -9.69228 -9.21139 -8.85022 -8.56630 -8.48675 -8.44018 -7.89766 -6.89820 -5.82251 -3.85029 1.52087 1.69325 3.40387 3.44321 3.49405 3.97616 4.53060 4.84267 4.94574 5.03513 5.14329 5.19609 5.28274 5.55186 5.57094 5.68429 5.74070 5.81281 5.85624 5.92758 5.99659 6.15419 6.17885 6.28127 6.33226 6.42146 6.48019 6.56432 6.66362 6.67380 6.74258 6.77570 6.82353 6.84369 6.95670 6.99586 7.04152 7.27558 7.30660 7.42794 7.70477 8.12467 8.39345 8.53382 8.69490 9.08670 9.74686 11.19145 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.006322 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.985306 B = 4427.657810 C = 4925.321943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.089 3.911 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.472 4.472 8 H 0.051 0.949 9 C 0.070 3.930 10 C 0.103 3.897 11 N -0.507 5.507 12 C 0.078 3.922 13 C -0.131 4.131 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.133 4.133 18 C -0.127 4.127 19 C -0.061 4.061 20 C -0.117 4.117 21 C 0.081 3.919 22 C -0.211 4.211 23 C -0.226 4.226 24 H 0.256 0.744 25 H 0.000 1.000 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -7.855 8.787 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.114 4.114 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.509 4.509 8 H 0.070 0.930 9 C 0.069 3.931 10 C -0.023 4.023 11 N -0.227 5.227 12 C -0.051 4.051 13 C -0.170 4.170 14 C -0.058 4.058 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.061 4.061 20 C -0.156 4.156 21 C -0.048 4.048 22 C -0.249 4.249 23 C -0.263 4.263 24 H 0.066 0.934 25 H 0.018 0.982 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.053 -7.305 8.802 12.135 hybrid contribution -0.054 -0.103 0.183 0.217 sum -4.107 -7.408 8.985 12.349 Atomic orbital electron populations 1.69773 1.05910 1.26065 1.49832 1.24710 0.94545 0.98286 0.93809 0.86737 0.79672 0.83522 0.78297 1.20907 1.21607 1.20280 1.20254 0.92796 0.89041 1.48775 0.93039 1.18986 0.93659 0.88334 0.92140 1.21776 0.98504 0.94835 0.87213 1.58838 1.19682 1.39938 1.04216 1.20926 0.98650 0.88108 0.97419 1.21537 0.92304 1.00992 1.02147 1.19136 0.95456 0.93674 0.97559 1.21874 0.98405 0.96228 0.98135 1.20901 0.94097 0.99621 1.00405 1.20896 0.98258 0.95270 1.00690 1.21874 0.97921 0.96676 0.98072 1.19122 0.92671 0.96638 0.97645 1.21280 1.00695 0.92006 1.01631 1.20916 0.89041 0.98121 0.96758 1.22973 0.99328 1.08017 0.94616 1.23172 0.96841 1.02824 1.03438 0.93359 0.98243 0.86886 0.90470 0.93412 0.88426 0.91464 0.86716 0.86623 0.86618 0.86681 0.91344 0.89947 0.93309 0.90612 0.92181 0.90647 0.91057 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.32 10.70 55.43 0.59 -22.73 16 2 C 0.09 2.35 5.19 -17.82 -0.09 2.26 16 3 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.47 -12.54 8.73 -34.44 -0.30 -12.84 16 8 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16 9 C 0.07 1.66 1.56 -155.66 -0.24 1.42 16 10 C 0.10 2.29 2.36 -3.82 -0.01 2.28 16 11 N -0.51 -10.54 4.09 -243.25 -0.99 -11.53 16 12 C 0.08 1.46 4.90 -6.81 -0.03 1.42 16 13 C -0.13 -2.19 4.41 -28.49 -0.13 -2.32 16 14 C -0.06 -0.95 5.31 -104.71 -0.56 -1.50 16 15 C -0.13 -1.83 9.28 -38.90 -0.36 -2.19 16 16 C -0.13 -1.71 10.07 -39.94 -0.40 -2.11 16 17 C -0.13 -1.71 10.07 -39.94 -0.40 -2.12 16 18 C -0.13 -1.81 9.28 -38.90 -0.36 -2.17 16 19 C -0.06 -0.98 5.42 -104.70 -0.57 -1.55 16 20 C -0.12 -1.94 4.89 -28.48 -0.14 -2.08 16 21 C 0.08 1.51 5.50 -6.80 -0.04 1.47 16 22 C -0.21 -4.77 9.96 -26.70 -0.27 -5.03 16 23 C -0.23 -4.80 8.76 -26.70 -0.23 -5.03 16 24 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 25 H 0.00 -0.01 4.71 -51.93 -0.24 -0.25 16 26 H 0.11 2.81 5.21 -51.93 -0.27 2.54 16 27 H 0.08 1.54 7.60 -51.93 -0.39 1.15 16 28 H 0.05 0.84 7.52 -51.93 -0.39 0.45 16 29 H 0.10 1.79 3.05 -51.92 -0.16 1.63 16 30 H 0.07 0.98 7.31 -51.93 -0.38 0.60 16 31 H 0.11 1.44 7.44 -52.49 -0.39 1.05 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.42 7.44 -52.49 -0.39 1.03 16 35 H 0.07 0.98 7.31 -51.93 -0.38 0.60 16 36 H 0.08 1.50 6.31 -51.93 -0.33 1.17 16 37 H 0.05 0.85 7.52 -51.93 -0.39 0.46 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.07 1.38 5.18 -51.93 -0.27 1.11 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -26.94 312.77 -10.91 -37.85 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.07 Total: 5.73 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -4.13 Total: -30.10 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.40 Total: -34.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.94 -10.91 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.860 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds