Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48496 * 109.47457 * 240.00230 * 3 2 1 5 5 H 1.48499 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47055 * 119.99972 * 3 2 1 7 7 C 1.37873 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00018 * 171.38843 * 7 2 1 9 9 C 1.50702 * 120.00030 * 351.39477 * 7 2 1 10 10 C 1.53006 * 115.54696 * 324.20240 * 9 7 2 11 11 N 1.46901 * 109.47020 * 306.03394 * 10 9 7 12 12 C 1.43425 * 111.00003 * 289.99207 * 11 10 9 13 13 C 1.50732 * 112.80267 * 319.06432 * 12 11 10 14 14 C 1.51782 * 112.52551 * 295.24799 * 13 12 11 15 15 C 1.41070 * 110.38069 * 219.70501 * 14 13 12 16 16 C 1.37169 * 121.78981 * 179.97438 * 15 14 13 17 17 C 1.38327 * 118.97257 * 0.02562 * 16 15 14 18 18 C 1.37167 * 118.97063 * 0.03024 * 17 16 15 19 19 C 1.33391 * 130.38269 * 39.74352 * 14 13 12 20 20 C 1.51791 * 130.38771 * 0.02562 * 19 14 13 21 21 C 1.43427 * 110.99910 * 160.85380 * 11 10 9 22 22 C 1.52992 * 117.50291 * 109.87683 * 9 7 2 23 23 C 1.52998 * 117.50042 * 178.53824 * 9 7 2 24 24 H 0.97009 * 120.00156 * 5.01003 * 1 2 3 25 25 H 1.08997 * 109.47188 * 186.03207 * 10 9 7 26 26 H 1.08998 * 109.46768 * 66.03261 * 10 9 7 27 27 H 1.09001 * 108.81431 * 79.91676 * 12 11 10 28 28 H 1.08992 * 108.81633 * 198.20515 * 12 11 10 29 29 H 1.09007 * 108.86882 * 56.02533 * 13 12 11 30 30 H 1.09000 * 108.87205 * 174.45332 * 13 12 11 31 31 H 1.07993 * 119.10346 * 0.02562 * 15 14 13 32 32 H 1.08005 * 120.50990 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.51985 * 180.02562 * 17 16 15 34 34 H 1.07993 * 119.10979 * 179.97438 * 18 17 16 35 35 H 1.08998 * 108.87469 * 199.44154 * 20 19 14 36 36 H 1.09000 * 108.86784 * 81.01240 * 20 19 14 37 37 H 1.08993 * 108.81695 * 161.79743 * 21 11 10 38 38 H 1.09003 * 108.81359 * 280.08721 * 21 11 10 39 39 H 1.09007 * 117.49791 * 215.00323 * 22 9 7 40 40 H 1.08996 * 117.49966 * 0.02562 * 22 9 7 41 41 H 1.09004 * 117.49820 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49995 * 144.96593 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0754 -1.1992 -0.1406 9 6 1.2637 -2.4919 0.1942 10 6 0.0798 -2.4371 1.1618 11 7 0.5253 -1.8898 2.4502 12 6 1.3786 -2.8171 3.1351 13 6 0.8984 -4.2418 3.0278 14 6 -0.4371 -4.4587 3.7156 15 6 -0.4480 -5.6990 4.3876 16 6 -1.5444 -6.1310 5.0895 17 6 -2.6688 -5.3266 5.1376 18 6 -2.6526 -4.1223 4.4813 19 6 -1.5216 -3.6834 3.7614 20 6 -1.7854 -2.3235 3.1407 21 6 -0.5877 -1.4115 3.2180 22 6 1.1484 -3.4272 -1.0110 23 6 2.0803 -3.7850 0.1494 24 1 -0.4851 0.8369 -0.0734 25 1 -0.3144 -3.4423 1.3109 26 1 -0.7000 -1.7990 0.7461 27 1 2.3809 -2.7511 2.7118 28 1 1.4252 -2.5401 4.1882 29 1 0.7985 -4.5017 1.9739 30 1 1.6399 -4.8990 3.4821 31 1 0.4312 -6.3250 4.3490 32 1 -1.5300 -7.0843 5.5969 33 1 -3.5458 -5.6420 5.6833 34 1 -3.5294 -3.4927 4.5170 35 1 -2.6200 -1.8542 3.6614 36 1 -2.0575 -2.4606 2.0941 37 1 -0.2824 -1.3195 4.2602 38 1 -0.8718 -0.4260 2.8488 39 1 0.2290 -4.0036 -1.1146 40 1 1.6087 -3.1041 -1.9447 41 1 3.1533 -3.6970 -0.0213 42 1 1.7743 -4.5965 0.8096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = 63.511832 kcal Electronic energy + Delta-G solvation = -21897.221142 eV Core-core repulsion = 19035.957505 eV Total energy + Delta-G solvation = -2861.263637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48662 -39.25065 -37.17480 -34.57406 -33.91632 -32.90403 -30.59391 -28.63653 -27.27089 -26.70852 -25.20338 -23.33755 -22.95382 -21.79695 -20.52785 -20.05231 -18.06804 -17.26244 -16.89927 -16.45247 -16.35490 -16.05897 -15.91953 -15.47657 -14.90321 -14.77281 -14.00726 -13.83671 -13.62191 -13.50031 -13.17733 -12.97711 -12.81069 -12.76183 -12.61438 -12.31934 -12.18563 -12.08839 -12.00060 -11.79440 -11.50477 -11.08587 -11.03374 -10.76477 -10.42268 -9.82213 -9.60617 -9.54125 -8.46480 -7.83042 -5.92011 0.47151 0.60406 1.47426 1.50849 1.55929 2.55037 2.89955 3.18797 3.54163 3.67935 3.83741 3.91223 4.07548 4.13620 4.24920 4.36789 4.41915 4.49380 4.55356 4.57829 4.64517 4.75975 4.80804 4.84609 4.91725 4.94679 5.05298 5.11531 5.13114 5.17801 5.20275 5.23142 5.36507 5.43467 5.53433 5.63577 5.64741 5.67044 5.75315 5.84575 6.17149 6.20230 6.55762 6.79315 7.06558 7.08545 7.68679 9.14785 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.006322 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.985306 B = 4427.657810 C = 4925.321943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.055 3.945 3 Si 0.937 3.063 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.490 4.490 8 H 0.036 0.964 9 C 0.041 3.959 10 C 0.127 3.873 11 N -0.528 5.528 12 C 0.082 3.918 13 C -0.122 4.122 14 C -0.080 4.080 15 C -0.137 4.137 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.082 4.082 20 C -0.107 4.107 21 C 0.085 3.915 22 C -0.215 4.215 23 C -0.201 4.201 24 H 0.254 0.746 25 H 0.005 0.995 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -9.527 10.555 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.146 4.146 3 Si 0.765 3.235 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.041 3.959 10 C 0.000 4.000 11 N -0.248 5.248 12 C -0.047 4.047 13 C -0.160 4.160 14 C -0.080 4.080 15 C -0.155 4.155 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.082 4.082 20 C -0.146 4.146 21 C -0.044 4.044 22 C -0.253 4.253 23 C -0.238 4.238 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.657 -8.982 10.568 14.631 hybrid contribution 0.131 0.384 -0.336 0.527 sum -4.526 -8.598 10.232 14.111 Atomic orbital electron populations 1.69906 1.06484 1.26262 1.50091 1.25204 0.95220 1.00383 0.93842 0.85982 0.78663 0.80942 0.77922 1.20826 1.21261 1.20574 1.20427 0.92293 0.90731 1.49271 0.94545 1.19112 0.95047 0.88346 0.93430 1.21363 0.96805 0.94313 0.87541 1.58708 1.20798 1.40971 1.04345 1.20839 0.97275 0.89291 0.97305 1.21374 0.93615 0.99641 1.01358 1.19186 0.95120 0.95000 0.98698 1.22056 0.99754 0.95614 0.98060 1.21300 0.93352 1.00603 0.99381 1.21290 0.99288 0.94396 0.99743 1.22048 0.97708 0.97728 0.97988 1.19159 0.93836 0.96389 0.98839 1.21116 1.00183 0.92597 1.00691 1.20812 0.89498 0.97465 0.96646 1.22957 1.00219 1.07934 0.94225 1.23142 0.96352 1.01865 1.02407 0.93591 0.97720 0.89893 0.92383 0.92544 0.90273 0.89302 0.85117 0.83628 0.83662 0.85246 0.89332 0.92262 0.92291 0.92972 0.91146 0.91661 0.91237 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.39 10.70 21.45 0.23 -48.16 16 2 C 0.05 2.94 5.19 84.65 0.44 3.38 16 3 Si 0.94 43.94 29.55 68.60 2.03 45.97 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.49 -26.62 8.73 25.60 0.22 -26.40 16 8 H 0.04 2.03 7.83 -2.91 -0.02 2.01 16 9 C 0.04 2.01 1.56 -52.93 -0.08 1.93 16 10 C 0.13 5.74 2.36 86.31 0.20 5.94 16 11 N -0.53 -22.25 4.09 -923.52 -3.77 -26.03 16 12 C 0.08 3.02 4.90 86.21 0.42 3.44 16 13 C -0.12 -3.90 4.41 29.46 0.13 -3.77 16 14 C -0.08 -2.46 5.31 -19.92 -0.11 -2.56 16 15 C -0.14 -3.49 9.28 22.71 0.21 -3.28 16 16 C -0.13 -2.80 10.07 22.04 0.22 -2.58 16 17 C -0.13 -2.83 10.07 22.04 0.22 -2.61 16 18 C -0.14 -3.53 9.28 22.71 0.21 -3.32 16 19 C -0.08 -2.55 5.42 -19.92 -0.11 -2.65 16 20 C -0.11 -3.53 4.89 29.46 0.14 -3.39 16 21 C 0.08 3.20 5.50 86.21 0.47 3.67 16 22 C -0.21 -9.76 9.96 30.61 0.30 -9.45 16 23 C -0.20 -8.45 8.76 30.62 0.27 -8.19 16 24 H 0.25 13.46 8.32 -92.70 -0.77 12.68 16 25 H 0.01 0.22 4.71 -2.39 -0.01 0.21 16 26 H 0.08 4.27 5.21 -2.39 -0.01 4.26 16 27 H 0.06 2.33 7.60 -2.39 -0.02 2.31 16 28 H 0.06 1.95 7.52 -2.39 -0.02 1.93 16 29 H 0.08 2.82 3.05 -2.38 -0.01 2.81 16 30 H 0.09 2.40 7.31 -2.39 -0.02 2.39 16 31 H 0.13 2.82 7.44 -2.91 -0.02 2.80 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.13 2.86 7.44 -2.91 -0.02 2.83 16 35 H 0.09 2.48 7.31 -2.39 -0.02 2.46 16 36 H 0.06 2.21 6.31 -2.39 -0.02 2.20 16 37 H 0.06 2.05 7.52 -2.39 -0.02 2.04 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 42 H 0.09 3.52 5.18 -2.39 -0.01 3.51 16 Total: -1.00 -58.05 312.77 2.67 -55.38 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.01 Total: 22.67 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 3.18 Total: -49.83 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -3.55 Total: -74.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -58.05 2.67 -55.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.890 kcal (2) G-P(sol) polarization free energy of solvation -58.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds